co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G36990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042407: cristae formation	0.00E+00
2	GO:0060416: response to growth hormone	0.00E+00
3	GO:0042371: vitamin K biosynthetic process	0.00E+00
4	GO:0006399: tRNA metabolic process	0.00E+00
5	GO:0070125: mitochondrial translational elongation	0.00E+00
6	GO:0046719: regulation by virus of viral protein levels in host cell	0.00E+00
7	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
8	GO:0032544: plastid translation	1.28E-15
9	GO:0006412: translation	3.62E-11
10	GO:0006782: protoporphyrinogen IX biosynthetic process	8.60E-08
11	GO:0015995: chlorophyll biosynthetic process	5.63E-07
12	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.45E-06
13	GO:0006779: porphyrin-containing compound biosynthetic process	5.67E-06
14	GO:0010027: thylakoid membrane organization	1.21E-05
15	GO:0009658: chloroplast organization	1.35E-05
16	GO:0042254: ribosome biogenesis	1.42E-05
17	GO:0045038: protein import into chloroplast thylakoid membrane	3.73E-05
18	GO:0009306: protein secretion	6.84E-05
19	GO:1901259: chloroplast rRNA processing	7.74E-05
20	GO:0006438: valyl-tRNA aminoacylation	1.73E-04
21	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	1.73E-04
22	GO:0006426: glycyl-tRNA aminoacylation	1.73E-04
23	GO:1902458: positive regulation of stomatal opening	1.73E-04
24	GO:0034337: RNA folding	1.73E-04
25	GO:0048363: mucilage pectin metabolic process	1.73E-04
26	GO:0006434: seryl-tRNA aminoacylation	1.73E-04
27	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	1.73E-04
28	GO:0006783: heme biosynthetic process	2.02E-04
29	GO:0045037: protein import into chloroplast stroma	3.80E-04
30	GO:0006423: cysteinyl-tRNA aminoacylation	3.92E-04
31	GO:0071668: plant-type cell wall assembly	3.92E-04
32	GO:0080148: negative regulation of response to water deprivation	3.92E-04
33	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.92E-04
34	GO:0043039: tRNA aminoacylation	3.92E-04
35	GO:0009793: embryo development ending in seed dormancy	5.24E-04
36	GO:0010581: regulation of starch biosynthetic process	6.40E-04
37	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	6.40E-04
38	GO:0006954: inflammatory response	6.40E-04
39	GO:0006518: peptide metabolic process	6.40E-04
40	GO:0005977: glycogen metabolic process	6.40E-04
41	GO:0006011: UDP-glucose metabolic process	6.40E-04
42	GO:0006730: one-carbon metabolic process	8.83E-04
43	GO:0006241: CTP biosynthetic process	9.13E-04
44	GO:0006165: nucleoside diphosphate phosphorylation	9.13E-04
45	GO:0006228: UTP biosynthetic process	9.13E-04
46	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	9.13E-04
47	GO:2001141: regulation of RNA biosynthetic process	9.13E-04
48	GO:0006749: glutathione metabolic process	1.21E-03
49	GO:0006808: regulation of nitrogen utilization	1.21E-03
50	GO:0006183: GTP biosynthetic process	1.21E-03
51	GO:0006564: L-serine biosynthetic process	1.54E-03
52	GO:0010236: plastoquinone biosynthetic process	1.54E-03
53	GO:0009247: glycolipid biosynthetic process	1.54E-03
54	GO:0016554: cytidine to uridine editing	1.89E-03
55	GO:0032973: amino acid export	1.89E-03
56	GO:0006655: phosphatidylglycerol biosynthetic process	1.89E-03
57	GO:0010942: positive regulation of cell death	1.89E-03
58	GO:0042372: phylloquinone biosynthetic process	2.27E-03
59	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.27E-03
60	GO:0030488: tRNA methylation	2.27E-03
61	GO:0009854: oxidative photosynthetic carbon pathway	2.27E-03
62	GO:0009955: adaxial/abaxial pattern specification	2.27E-03
63	GO:0046686: response to cadmium ion	2.58E-03
64	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.67E-03
65	GO:0006821: chloride transport	2.67E-03
66	GO:0045995: regulation of embryonic development	2.67E-03
67	GO:0009772: photosynthetic electron transport in photosystem II	2.67E-03
68	GO:0043090: amino acid import	2.67E-03
69	GO:0042255: ribosome assembly	3.09E-03
70	GO:0006605: protein targeting	3.09E-03
71	GO:0019375: galactolipid biosynthetic process	3.09E-03
72	GO:0009704: de-etiolation	3.09E-03
73	GO:2000070: regulation of response to water deprivation	3.09E-03
74	GO:0052543: callose deposition in cell wall	3.09E-03
75	GO:0009657: plastid organization	3.54E-03
76	GO:0019430: removal of superoxide radicals	3.54E-03
77	GO:0017004: cytochrome complex assembly	3.54E-03
78	GO:0071482: cellular response to light stimulus	3.54E-03
79	GO:0022900: electron transport chain	3.54E-03
80	GO:0009853: photorespiration	3.78E-03
81	GO:0009821: alkaloid biosynthetic process	4.00E-03
82	GO:0080144: amino acid homeostasis	4.00E-03
83	GO:0009735: response to cytokinin	4.44E-03
84	GO:1900865: chloroplast RNA modification	4.49E-03
85	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.49E-03
86	GO:0010380: regulation of chlorophyll biosynthetic process	4.49E-03
87	GO:0010205: photoinhibition	4.49E-03
88	GO:0043067: regulation of programmed cell death	4.49E-03
89	GO:0006535: cysteine biosynthetic process from serine	4.99E-03
90	GO:0006415: translational termination	5.52E-03
91	GO:0009073: aromatic amino acid family biosynthetic process	5.52E-03
92	GO:0043085: positive regulation of catalytic activity	5.52E-03
93	GO:0006352: DNA-templated transcription, initiation	5.52E-03
94	GO:0016024: CDP-diacylglycerol biosynthetic process	6.06E-03
95	GO:0006006: glucose metabolic process	6.61E-03
96	GO:0010020: chloroplast fission	7.20E-03
97	GO:0019253: reductive pentose-phosphate cycle	7.20E-03
98	GO:0090351: seedling development	7.79E-03
99	GO:0006636: unsaturated fatty acid biosynthetic process	8.41E-03
100	GO:0019344: cysteine biosynthetic process	9.03E-03
101	GO:0006418: tRNA aminoacylation for protein translation	9.69E-03
102	GO:0031408: oxylipin biosynthetic process	1.03E-02
103	GO:0019915: lipid storage	1.03E-02
104	GO:0016226: iron-sulfur cluster assembly	1.10E-02
105	GO:0007005: mitochondrion organization	1.10E-02
106	GO:0009411: response to UV	1.17E-02
107	GO:0009058: biosynthetic process	1.23E-02
108	GO:0009561: megagametogenesis	1.24E-02
109	GO:0016117: carotenoid biosynthetic process	1.32E-02
110	GO:0009790: embryo development	1.37E-02
111	GO:0000271: polysaccharide biosynthetic process	1.39E-02
112	GO:0045489: pectin biosynthetic process	1.47E-02
113	GO:0010197: polar nucleus fusion	1.47E-02
114	GO:0009741: response to brassinosteroid	1.47E-02
115	GO:0040008: regulation of growth	1.54E-02
116	GO:0032502: developmental process	1.78E-02
117	GO:0008380: RNA splicing	1.93E-02
118	GO:0009567: double fertilization forming a zygote and endosperm	1.95E-02
119	GO:0009409: response to cold	2.33E-02
120	GO:0048481: plant ovule development	2.67E-02
121	GO:0000160: phosphorelay signal transduction system	2.77E-02
122	GO:0009407: toxin catabolic process	2.87E-02
123	GO:0048527: lateral root development	2.96E-02
124	GO:0016051: carbohydrate biosynthetic process	3.16E-02
125	GO:0009637: response to blue light	3.16E-02
126	GO:0006839: mitochondrial transport	3.47E-02
127	GO:0015979: photosynthesis	3.55E-02
128	GO:0042542: response to hydrogen peroxide	3.68E-02
129	GO:0045454: cell redox homeostasis	3.72E-02
130	GO:0010114: response to red light	3.79E-02
131	GO:0009744: response to sucrose	3.79E-02
132	GO:0051707: response to other organism	3.79E-02
133	GO:0009636: response to toxic substance	4.12E-02
134	GO:0006812: cation transport	4.45E-02
135	GO:0009585: red, far-red light phototransduction	4.68E-02
136	GO:0009736: cytokinin-activated signaling pathway	4.68E-02
137	GO:0051603: proteolysis involved in cellular protein catabolic process	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0008887: glycerate kinase activity	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
5	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
6	GO:0005048: signal sequence binding	0.00E+00
7	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
8	GO:0019843: rRNA binding	6.59E-21
9	GO:0003735: structural constituent of ribosome	1.42E-13
10	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	1.45E-06
11	GO:0004828: serine-tRNA ligase activity	1.73E-04
12	GO:0004655: porphobilinogen synthase activity	1.73E-04
13	GO:0004853: uroporphyrinogen decarboxylase activity	1.73E-04
14	GO:0004832: valine-tRNA ligase activity	1.73E-04
15	GO:0004820: glycine-tRNA ligase activity	1.73E-04
16	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.73E-04
17	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.73E-04
18	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.92E-04
19	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.92E-04
20	GO:0004617: phosphoglycerate dehydrogenase activity	3.92E-04
21	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	3.92E-04
22	GO:0004817: cysteine-tRNA ligase activity	3.92E-04
23	GO:0017150: tRNA dihydrouridine synthase activity	6.40E-04
24	GO:0004148: dihydrolipoyl dehydrogenase activity	6.40E-04
25	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	6.40E-04
26	GO:0051536: iron-sulfur cluster binding	6.71E-04
27	GO:0016851: magnesium chelatase activity	9.13E-04
28	GO:0035250: UDP-galactosyltransferase activity	9.13E-04
29	GO:0016149: translation release factor activity, codon specific	9.13E-04
30	GO:0004550: nucleoside diphosphate kinase activity	9.13E-04
31	GO:0008097: 5S rRNA binding	9.13E-04
32	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	9.13E-04
33	GO:0003727: single-stranded RNA binding	1.04E-03
34	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.21E-03
35	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.21E-03
36	GO:0004659: prenyltransferase activity	1.21E-03
37	GO:0001053: plastid sigma factor activity	1.21E-03
38	GO:0016987: sigma factor activity	1.21E-03
39	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.54E-03
40	GO:0008374: O-acyltransferase activity	1.54E-03
41	GO:0005247: voltage-gated chloride channel activity	1.89E-03
42	GO:0008565: protein transporter activity	2.26E-03
43	GO:0004124: cysteine synthase activity	2.27E-03
44	GO:0003729: mRNA binding	2.36E-03
45	GO:0008312: 7S RNA binding	3.09E-03
46	GO:0004222: metalloendopeptidase activity	3.29E-03
47	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.54E-03
48	GO:0003747: translation release factor activity	4.00E-03
49	GO:0016844: strictosidine synthase activity	4.49E-03
50	GO:0008047: enzyme activator activity	4.99E-03
51	GO:0051537: 2 iron, 2 sulfur cluster binding	5.26E-03
52	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.67E-03
53	GO:0051287: NAD binding	5.89E-03
54	GO:0031072: heat shock protein binding	6.61E-03
55	GO:0008266: poly(U) RNA binding	7.20E-03
56	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.20E-03
57	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.10E-02
58	GO:0030170: pyridoxal phosphate binding	1.30E-02
59	GO:0004812: aminoacyl-tRNA ligase activity	1.32E-02
60	GO:0010181: FMN binding	1.54E-02
61	GO:0004791: thioredoxin-disulfide reductase activity	1.54E-02
62	GO:0000156: phosphorelay response regulator activity	1.87E-02
63	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.87E-02
64	GO:0008483: transaminase activity	2.04E-02
65	GO:0016597: amino acid binding	2.12E-02
66	GO:0016491: oxidoreductase activity	2.23E-02
67	GO:0003723: RNA binding	2.35E-02
68	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.67E-02
69	GO:0003746: translation elongation factor activity	3.16E-02
70	GO:0050661: NADP binding	3.47E-02
71	GO:0004364: glutathione transferase activity	3.68E-02
72	GO:0004185: serine-type carboxypeptidase activity	3.79E-02
73	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.68E-02
74	GO:0003690: double-stranded DNA binding	4.80E-02
75	GO:0009055: electron carrier activity	4.89E-02
76	GO:0004519: endonuclease activity	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	1.69E-54
3	GO:0009570: chloroplast stroma	3.81E-37
4	GO:0009941: chloroplast envelope	5.93E-33
5	GO:0009535: chloroplast thylakoid membrane	7.69E-18
6	GO:0005840: ribosome	1.21E-14
7	GO:0009579: thylakoid	5.19E-09
8	GO:0000311: plastid large ribosomal subunit	1.74E-07
9	GO:0009536: plastid	2.16E-07
10	GO:0033281: TAT protein transport complex	5.37E-06
11	GO:0009534: chloroplast thylakoid	9.09E-06
12	GO:0000312: plastid small ribosomal subunit	1.92E-05
13	GO:0009547: plastid ribosome	1.73E-04
14	GO:0009706: chloroplast inner membrane	1.80E-04
15	GO:0009295: nucleoid	1.91E-04
16	GO:0031969: chloroplast membrane	2.06E-04
17	GO:0015934: large ribosomal subunit	3.90E-04
18	GO:0080085: signal recognition particle, chloroplast targeting	3.92E-04
19	GO:0009509: chromoplast	6.40E-04
20	GO:0042646: plastid nucleoid	9.13E-04
21	GO:0009543: chloroplast thylakoid lumen	1.80E-03
22	GO:0034707: chloride channel complex	1.89E-03
23	GO:0016363: nuclear matrix	2.27E-03
24	GO:0005762: mitochondrial large ribosomal subunit	2.27E-03
25	GO:0009539: photosystem II reaction center	3.54E-03
26	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.54E-03
27	GO:0022627: cytosolic small ribosomal subunit	3.87E-03
28	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.00E-03
29	GO:0005763: mitochondrial small ribosomal subunit	4.00E-03
30	GO:0032040: small-subunit processome	6.06E-03
31	GO:0019013: viral nucleocapsid	6.61E-03
32	GO:0009508: plastid chromosome	6.61E-03
33	GO:0009654: photosystem II oxygen evolving complex	9.69E-03
34	GO:0015935: small ribosomal subunit	1.03E-02
35	GO:0005623: cell	1.20E-02
36	GO:0005622: intracellular	1.22E-02
37	GO:0005759: mitochondrial matrix	1.47E-02
38	GO:0010319: stromule	2.04E-02