Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G36990

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009249: protein lipoylation0.00E+00
2GO:0043488: regulation of mRNA stability0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0017038: protein import0.00E+00
5GO:0046460: neutral lipid biosynthetic process0.00E+00
6GO:0090470: shoot organ boundary specification0.00E+00
7GO:0090279: regulation of calcium ion import0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:0031116: positive regulation of microtubule polymerization0.00E+00
10GO:0042407: cristae formation0.00E+00
11GO:0042821: pyridoxal biosynthetic process0.00E+00
12GO:0042820: vitamin B6 catabolic process0.00E+00
13GO:0009106: lipoate metabolic process0.00E+00
14GO:0090042: tubulin deacetylation0.00E+00
15GO:0015882: L-ascorbic acid transport0.00E+00
16GO:0018023: peptidyl-lysine trimethylation0.00E+00
17GO:0071474: cellular hyperosmotic response0.00E+00
18GO:0010157: response to chlorate0.00E+00
19GO:0006399: tRNA metabolic process0.00E+00
20GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
21GO:0070125: mitochondrial translational elongation0.00E+00
22GO:0009658: chloroplast organization2.02E-06
23GO:0006415: translational termination1.13E-04
24GO:0045037: protein import into chloroplast stroma1.39E-04
25GO:0016123: xanthophyll biosynthetic process2.13E-04
26GO:0045038: protein import into chloroplast thylakoid membrane2.13E-04
27GO:0010027: thylakoid membrane organization2.25E-04
28GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.01E-04
29GO:0042793: transcription from plastid promoter3.01E-04
30GO:0010190: cytochrome b6f complex assembly3.01E-04
31GO:0006747: FAD biosynthetic process5.00E-04
32GO:0000023: maltose metabolic process5.00E-04
33GO:0006419: alanyl-tRNA aminoacylation5.00E-04
34GO:0000476: maturation of 4.5S rRNA5.00E-04
35GO:0009443: pyridoxal 5'-phosphate salvage5.00E-04
36GO:0000967: rRNA 5'-end processing5.00E-04
37GO:1902478: negative regulation of defense response to bacterium, incompatible interaction5.00E-04
38GO:0043266: regulation of potassium ion transport5.00E-04
39GO:0042547: cell wall modification involved in multidimensional cell growth5.00E-04
40GO:2000021: regulation of ion homeostasis5.00E-04
41GO:1902458: positive regulation of stomatal opening5.00E-04
42GO:0010028: xanthophyll cycle5.00E-04
43GO:0006400: tRNA modification5.16E-04
44GO:0009793: embryo development ending in seed dormancy5.78E-04
45GO:0016117: carotenoid biosynthetic process6.43E-04
46GO:0006605: protein targeting6.43E-04
47GO:0006353: DNA-templated transcription, termination6.43E-04
48GO:0032544: plastid translation7.83E-04
49GO:0010206: photosystem II repair9.36E-04
50GO:1903426: regulation of reactive oxygen species biosynthetic process1.08E-03
51GO:0051262: protein tetramerization1.08E-03
52GO:0034470: ncRNA processing1.08E-03
53GO:0010198: synergid death1.08E-03
54GO:0009629: response to gravity1.08E-03
55GO:1900871: chloroplast mRNA modification1.08E-03
56GO:0006432: phenylalanyl-tRNA aminoacylation1.08E-03
57GO:0007154: cell communication1.08E-03
58GO:0018026: peptidyl-lysine monomethylation1.08E-03
59GO:0006423: cysteinyl-tRNA aminoacylation1.08E-03
60GO:0006435: threonyl-tRNA aminoacylation1.08E-03
61GO:0009220: pyrimidine ribonucleotide biosynthetic process1.08E-03
62GO:1900865: chloroplast RNA modification1.10E-03
63GO:0006782: protoporphyrinogen IX biosynthetic process1.28E-03
64GO:0009089: lysine biosynthetic process via diaminopimelate1.48E-03
65GO:0005983: starch catabolic process1.70E-03
66GO:0033591: response to L-ascorbic acid1.76E-03
67GO:0034051: negative regulation of plant-type hypersensitive response1.76E-03
68GO:0015940: pantothenate biosynthetic process1.76E-03
69GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.76E-03
70GO:0001578: microtubule bundle formation1.76E-03
71GO:0045493: xylan catabolic process1.76E-03
72GO:0030261: chromosome condensation1.76E-03
73GO:0009627: systemic acquired resistance1.87E-03
74GO:2000012: regulation of auxin polar transport1.93E-03
75GO:0015995: chlorophyll biosynthetic process2.00E-03
76GO:0010207: photosystem II assembly2.18E-03
77GO:0009102: biotin biosynthetic process2.56E-03
78GO:0046653: tetrahydrofolate metabolic process2.56E-03
79GO:0010239: chloroplast mRNA processing2.56E-03
80GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.56E-03
81GO:0006164: purine nucleotide biosynthetic process2.56E-03
82GO:0016556: mRNA modification2.56E-03
83GO:2001141: regulation of RNA biosynthetic process2.56E-03
84GO:0010371: regulation of gibberellin biosynthetic process2.56E-03
85GO:0045087: innate immune response3.09E-03
86GO:0010109: regulation of photosynthesis3.44E-03
87GO:0051322: anaphase3.44E-03
88GO:0009765: photosynthesis, light harvesting3.44E-03
89GO:0015846: polyamine transport3.44E-03
90GO:0022622: root system development3.44E-03
91GO:0007020: microtubule nucleation3.44E-03
92GO:0044205: 'de novo' UMP biosynthetic process3.44E-03
93GO:0006465: signal peptide processing4.41E-03
94GO:0046785: microtubule polymerization4.41E-03
95GO:0046907: intracellular transport4.41E-03
96GO:0016120: carotene biosynthetic process4.41E-03
97GO:0009107: lipoate biosynthetic process4.41E-03
98GO:0009306: protein secretion4.78E-03
99GO:0006655: phosphatidylglycerol biosynthetic process5.46E-03
100GO:0016554: cytidine to uridine editing5.46E-03
101GO:0032973: amino acid export5.46E-03
102GO:0034389: lipid particle organization6.60E-03
103GO:1901259: chloroplast rRNA processing6.60E-03
104GO:0030488: tRNA methylation6.60E-03
105GO:0048528: post-embryonic root development7.80E-03
106GO:0043090: amino acid import7.80E-03
107GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.80E-03
108GO:0010196: nonphotochemical quenching7.80E-03
109GO:0009396: folic acid-containing compound biosynthetic process7.80E-03
110GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process7.80E-03
111GO:0015693: magnesium ion transport7.80E-03
112GO:0032880: regulation of protein localization7.80E-03
113GO:0016032: viral process7.99E-03
114GO:0006508: proteolysis8.01E-03
115GO:0046686: response to cadmium ion8.73E-03
116GO:0052543: callose deposition in cell wall9.09E-03
117GO:0042255: ribosome assembly9.09E-03
118GO:0009704: de-etiolation9.09E-03
119GO:0070413: trehalose metabolism in response to stress9.09E-03
120GO:0006875: cellular metal ion homeostasis9.09E-03
121GO:2000070: regulation of response to water deprivation9.09E-03
122GO:0000105: histidine biosynthetic process9.09E-03
123GO:0009231: riboflavin biosynthetic process9.09E-03
124GO:0055114: oxidation-reduction process1.02E-02
125GO:0009932: cell tip growth1.04E-02
126GO:0071482: cellular response to light stimulus1.04E-02
127GO:0022900: electron transport chain1.04E-02
128GO:0009657: plastid organization1.04E-02
129GO:0017004: cytochrome complex assembly1.04E-02
130GO:0098656: anion transmembrane transport1.19E-02
131GO:0009821: alkaloid biosynthetic process1.19E-02
132GO:0080144: amino acid homeostasis1.19E-02
133GO:0019432: triglyceride biosynthetic process1.19E-02
134GO:0006783: heme biosynthetic process1.19E-02
135GO:0080167: response to karrikin1.27E-02
136GO:0043067: regulation of programmed cell death1.34E-02
137GO:0042761: very long-chain fatty acid biosynthetic process1.34E-02
138GO:0006779: porphyrin-containing compound biosynthetic process1.34E-02
139GO:0005982: starch metabolic process1.34E-02
140GO:0006949: syncytium formation1.49E-02
141GO:0045036: protein targeting to chloroplast1.49E-02
142GO:0009790: embryo development1.60E-02
143GO:0009684: indoleacetic acid biosynthetic process1.65E-02
144GO:0010015: root morphogenesis1.65E-02
145GO:0019684: photosynthesis, light reaction1.65E-02
146GO:0008285: negative regulation of cell proliferation1.65E-02
147GO:1903507: negative regulation of nucleic acid-templated transcription1.65E-02
148GO:0006352: DNA-templated transcription, initiation1.65E-02
149GO:0018119: peptidyl-cysteine S-nitrosylation1.65E-02
150GO:0007568: aging1.65E-02
151GO:0006413: translational initiation1.81E-02
152GO:0016024: CDP-diacylglycerol biosynthetic process1.82E-02
153GO:0009725: response to hormone1.99E-02
154GO:0019853: L-ascorbic acid biosynthetic process2.36E-02
155GO:0071732: cellular response to nitric oxide2.36E-02
156GO:0090351: seedling development2.36E-02
157GO:0008380: RNA splicing2.47E-02
158GO:0006071: glycerol metabolic process2.55E-02
159GO:0000162: tryptophan biosynthetic process2.55E-02
160GO:0010025: wax biosynthetic process2.55E-02
161GO:0009116: nucleoside metabolic process2.74E-02
162GO:0005992: trehalose biosynthetic process2.74E-02
163GO:0008299: isoprenoid biosynthetic process2.94E-02
164GO:0016575: histone deacetylation2.94E-02
165GO:0006418: tRNA aminoacylation for protein translation2.94E-02
166GO:0043622: cortical microtubule organization2.94E-02
167GO:0010073: meristem maintenance2.94E-02
168GO:0006364: rRNA processing3.14E-02
169GO:0048511: rhythmic process3.15E-02
170GO:0061077: chaperone-mediated protein folding3.15E-02
171GO:0016114: terpenoid biosynthetic process3.15E-02
172GO:0009814: defense response, incompatible interaction3.35E-02
173GO:2000022: regulation of jasmonic acid mediated signaling pathway3.35E-02
174GO:0035428: hexose transmembrane transport3.35E-02
175GO:0006730: one-carbon metabolic process3.35E-02
176GO:0031348: negative regulation of defense response3.35E-02
177GO:0019748: secondary metabolic process3.35E-02
178GO:0006012: galactose metabolic process3.57E-02
179GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.57E-02
180GO:0071369: cellular response to ethylene stimulus3.57E-02
181GO:0010227: floral organ abscission3.57E-02
182GO:0015031: protein transport3.60E-02
183GO:0051028: mRNA transport4.01E-02
184GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.01E-02
185GO:0008284: positive regulation of cell proliferation4.01E-02
186GO:0009409: response to cold4.04E-02
187GO:0008033: tRNA processing4.24E-02
188GO:0009958: positive gravitropism4.47E-02
189GO:0010197: polar nucleus fusion4.47E-02
190GO:0046323: glucose import4.47E-02
191GO:0009646: response to absence of light4.71E-02
192GO:0042752: regulation of circadian rhythm4.71E-02
193GO:0010183: pollen tube guidance4.94E-02
194GO:0005975: carbohydrate metabolic process4.96E-02
RankGO TermAdjusted P value
1GO:0036033: mediator complex binding0.00E+00
2GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
3GO:0005048: signal sequence binding0.00E+00
4GO:0004076: biotin synthase activity0.00E+00
5GO:0003937: IMP cyclohydrolase activity0.00E+00
6GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
7GO:0010349: L-galactose dehydrogenase activity0.00E+00
8GO:0043864: indoleacetamide hydrolase activity0.00E+00
9GO:0005363: maltose transmembrane transporter activity0.00E+00
10GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
11GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
12GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
13GO:0008115: sarcosine oxidase activity0.00E+00
14GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
15GO:0019808: polyamine binding0.00E+00
16GO:0050613: delta14-sterol reductase activity0.00E+00
17GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
18GO:0051721: protein phosphatase 2A binding0.00E+00
19GO:0042903: tubulin deacetylase activity0.00E+00
20GO:0043014: alpha-tubulin binding0.00E+00
21GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
22GO:0045435: lycopene epsilon cyclase activity0.00E+00
23GO:0004822: isoleucine-tRNA ligase activity0.00E+00
24GO:0015229: L-ascorbic acid transporter activity0.00E+00
25GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
26GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
27GO:0070402: NADPH binding1.23E-07
28GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.10E-05
29GO:0003747: translation release factor activity5.37E-05
30GO:0016149: translation release factor activity, codon specific8.00E-05
31GO:0016851: magnesium chelatase activity8.00E-05
32GO:0000049: tRNA binding1.39E-04
33GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.53E-04
34GO:0005525: GTP binding1.86E-04
35GO:0004040: amidase activity2.13E-04
36GO:0005528: FK506 binding3.17E-04
37GO:0004176: ATP-dependent peptidase activity4.12E-04
38GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.00E-04
39GO:0005227: calcium activated cation channel activity5.00E-04
40GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity5.00E-04
41GO:0004856: xylulokinase activity5.00E-04
42GO:0009496: plastoquinol--plastocyanin reductase activity5.00E-04
43GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.00E-04
44GO:0004813: alanine-tRNA ligase activity5.00E-04
45GO:0004853: uroporphyrinogen decarboxylase activity5.00E-04
46GO:0015088: copper uptake transmembrane transporter activity5.00E-04
47GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.00E-04
48GO:0016784: 3-mercaptopyruvate sulfurtransferase activity5.00E-04
49GO:0004033: aldo-keto reductase (NADP) activity6.43E-04
50GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.08E-03
51GO:0009977: proton motive force dependent protein transmembrane transporter activity1.08E-03
52GO:0016415: octanoyltransferase activity1.08E-03
53GO:0004817: cysteine-tRNA ligase activity1.08E-03
54GO:0003919: FMN adenylyltransferase activity1.08E-03
55GO:0004829: threonine-tRNA ligase activity1.08E-03
56GO:0004329: formate-tetrahydrofolate ligase activity1.08E-03
57GO:0004826: phenylalanine-tRNA ligase activity1.08E-03
58GO:0010291: carotene beta-ring hydroxylase activity1.08E-03
59GO:0017118: lipoyltransferase activity1.08E-03
60GO:0015462: ATPase-coupled protein transmembrane transporter activity1.76E-03
61GO:0004180: carboxypeptidase activity1.76E-03
62GO:0003913: DNA photolyase activity1.76E-03
63GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.76E-03
64GO:0002161: aminoacyl-tRNA editing activity1.76E-03
65GO:0004148: dihydrolipoyl dehydrogenase activity1.76E-03
66GO:0008236: serine-type peptidase activity2.14E-03
67GO:0008266: poly(U) RNA binding2.18E-03
68GO:0001872: (1->3)-beta-D-glucan binding2.56E-03
69GO:0019201: nucleotide kinase activity2.56E-03
70GO:0048487: beta-tubulin binding2.56E-03
71GO:0004792: thiosulfate sulfurtransferase activity2.56E-03
72GO:0016656: monodehydroascorbate reductase (NADH) activity2.56E-03
73GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.56E-03
74GO:0043023: ribosomal large subunit binding2.56E-03
75GO:0003723: RNA binding2.68E-03
76GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.75E-03
77GO:0001053: plastid sigma factor activity3.44E-03
78GO:0004045: aminoacyl-tRNA hydrolase activity3.44E-03
79GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.44E-03
80GO:0016987: sigma factor activity3.44E-03
81GO:0009044: xylan 1,4-beta-xylosidase activity3.44E-03
82GO:0046556: alpha-L-arabinofuranosidase activity3.44E-03
83GO:0016279: protein-lysine N-methyltransferase activity3.44E-03
84GO:0030570: pectate lyase activity4.39E-03
85GO:0045300: acyl-[acyl-carrier-protein] desaturase activity4.41E-03
86GO:0016773: phosphotransferase activity, alcohol group as acceptor4.41E-03
87GO:2001070: starch binding5.46E-03
88GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.46E-03
89GO:0042578: phosphoric ester hydrolase activity5.46E-03
90GO:0003743: translation initiation factor activity5.96E-03
91GO:0004017: adenylate kinase activity6.60E-03
92GO:0016832: aldehyde-lyase activity6.60E-03
93GO:0003730: mRNA 3'-UTR binding6.60E-03
94GO:0004144: diacylglycerol O-acyltransferase activity6.60E-03
95GO:0005261: cation channel activity6.60E-03
96GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.60E-03
97GO:0003924: GTPase activity6.72E-03
98GO:0009881: photoreceptor activity7.80E-03
99GO:0005337: nucleoside transmembrane transporter activity9.09E-03
100GO:0008312: 7S RNA binding9.09E-03
101GO:0043022: ribosome binding9.09E-03
102GO:0016788: hydrolase activity, acting on ester bonds9.40E-03
103GO:0008237: metallopeptidase activity9.65E-03
104GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.04E-02
105GO:0050660: flavin adenine dinucleotide binding1.14E-02
106GO:0019843: rRNA binding1.31E-02
107GO:0005381: iron ion transmembrane transporter activity1.34E-02
108GO:0016844: strictosidine synthase activity1.34E-02
109GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.36E-02
110GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.42E-02
111GO:0052689: carboxylic ester hydrolase activity1.47E-02
112GO:0004805: trehalose-phosphatase activity1.49E-02
113GO:0004222: metalloendopeptidase activity1.57E-02
114GO:0008559: xenobiotic-transporting ATPase activity1.65E-02
115GO:0003746: translation elongation factor activity1.81E-02
116GO:0003729: mRNA binding1.99E-02
117GO:0005315: inorganic phosphate transmembrane transporter activity1.99E-02
118GO:0015095: magnesium ion transmembrane transporter activity1.99E-02
119GO:0031072: heat shock protein binding1.99E-02
120GO:0051539: 4 iron, 4 sulfur cluster binding2.06E-02
121GO:0008083: growth factor activity2.17E-02
122GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.17E-02
123GO:0051537: 2 iron, 2 sulfur cluster binding2.52E-02
124GO:0043621: protein self-association2.52E-02
125GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.55E-02
126GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.55E-02
127GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.55E-02
128GO:0004519: endonuclease activity2.57E-02
129GO:0004857: enzyme inhibitor activity2.74E-02
130GO:0004407: histone deacetylase activity2.74E-02
131GO:0003714: transcription corepressor activity2.74E-02
132GO:0051536: iron-sulfur cluster binding2.74E-02
133GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.90E-02
134GO:0015079: potassium ion transmembrane transporter activity2.94E-02
135GO:0022891: substrate-specific transmembrane transporter activity3.57E-02
136GO:0008514: organic anion transmembrane transporter activity3.79E-02
137GO:0003727: single-stranded RNA binding3.79E-02
138GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.83E-02
139GO:0004812: aminoacyl-tRNA ligase activity4.01E-02
140GO:0051082: unfolded protein binding4.46E-02
141GO:0008536: Ran GTPase binding4.47E-02
142GO:0016853: isomerase activity4.71E-02
143GO:0005355: glucose transmembrane transporter activity4.71E-02
144GO:0004872: receptor activity4.94E-02
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Gene type



Gene DE type