gene detail

Gene description

RAP-DB: OS11G0448400

Short description: RNA polymerase sigma factor, region 2 domain containing protein.

Orthologous

Arabidopsis:

AT2G36990

Maize:

GRMZM2G143392

Wheat: No orthologous

GO biological process

transcription initiation, DNA-dependent (GO:0006352), regulation of transcription, DNA-dependent (GO:0006355)

GO cellular component

unknown

GO molecular function

DNA binding (GO:0003677), sequence-specific DNA binding transcription factor activity (GO:0003700), sigma factor activity (GO:0016987)

Protein domain

Pfam	PF04545, Sigma-70, region 4
Pfam	PF04542, Sigma-70 region 2
Pfam	PF04539, Sigma-70 region 3

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Coexpression network

GSE63047_T7174R  view
GSE33411_IRBB5  view
GSE16793_XOO  view
GSE16793_XOC  view
GSE62894_S_77  view
GSE33411_IRBB7  view
GSE62893_S_15B  view
GSE62893_R_15B  view
GSE33411_IR24  view
GSE63047_DELTAHRCV  view

Differentially expressed condition

17 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain T7174	-1.91	2.10E-04
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain BLS303	-1.81	3.28E-04
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain PXO99AME1	-1.75	3.01E-04
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain PXO99AME2	-1.96	7.21E-05
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain PXO99AME5	-1.55	1.80E-03
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain PXO99A_2	-1.81	1.73E-04
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain T7174	-2.71	2.98E-07
GSE62894	Nipponbare, pish, water 5 d	Nipponbare, pish, Magnaporthe oryzae Kyu77-07A 5 d	-5.78	1.66E-10
GSE62895	Nipponbare, Pia, water 1 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 1 d	4.61	7.40E-05
GSE62895	Nipponbare, Pia, water 2 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 2 d	5.19	9.67E-06
GSE62895	Nipponbare, Pia, water 3 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 3 d	4.70	1.54E-05
GSE62895	Nipponbare, Pia, water 5 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 5 d	2.85	4.49E-03
GSE62895	Nipponbare, pia, water 1 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 1 d	5.95	5.39E-07
GSE62895	Nipponbare, pia, water 2 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 2 d	5.16	5.88E-06
GSE62895	Nipponbare, pia, water 3 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 3 d	4.83	1.14E-05
GSE62895	Nipponbare, pia, water 5 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 5 d	2.11	1.15E-02
GSE63047	Nipponbare, water 7 d	Nipponbare, Xanthomonas oryzae T7174R 7 d	-1.99	4.27E-04