GO Enrichment Analysis of Co-expressed Genes with
AT2G36990
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019284: L-methionine salvage from S-adenosylmethionine | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 4 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 5 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 6 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 7 | GO:0006642: triglyceride mobilization | 0.00E+00 |
| 8 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 9 | GO:0009658: chloroplast organization | 5.70E-06 |
| 10 | GO:0010027: thylakoid membrane organization | 6.47E-06 |
| 11 | GO:0015979: photosynthesis | 1.53E-05 |
| 12 | GO:0006418: tRNA aminoacylation for protein translation | 2.41E-05 |
| 13 | GO:0006457: protein folding | 3.55E-05 |
| 14 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.40E-04 |
| 15 | GO:1904964: positive regulation of phytol biosynthetic process | 1.40E-04 |
| 16 | GO:0010028: xanthophyll cycle | 1.40E-04 |
| 17 | GO:0006430: lysyl-tRNA aminoacylation | 1.40E-04 |
| 18 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 1.40E-04 |
| 19 | GO:1903866: palisade mesophyll development | 1.40E-04 |
| 20 | GO:0046166: glyceraldehyde-3-phosphate biosynthetic process | 1.40E-04 |
| 21 | GO:0015995: chlorophyll biosynthetic process | 1.86E-04 |
| 22 | GO:0009073: aromatic amino acid family biosynthetic process | 2.44E-04 |
| 23 | GO:0043085: positive regulation of catalytic activity | 2.44E-04 |
| 24 | GO:0006568: tryptophan metabolic process | 3.20E-04 |
| 25 | GO:0010270: photosystem II oxygen evolving complex assembly | 3.20E-04 |
| 26 | GO:0043039: tRNA aminoacylation | 3.20E-04 |
| 27 | GO:0006695: cholesterol biosynthetic process | 3.20E-04 |
| 28 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.20E-04 |
| 29 | GO:0019253: reductive pentose-phosphate cycle | 3.63E-04 |
| 30 | GO:0090391: granum assembly | 5.26E-04 |
| 31 | GO:0019563: glycerol catabolic process | 5.26E-04 |
| 32 | GO:0006518: peptide metabolic process | 5.26E-04 |
| 33 | GO:0051604: protein maturation | 5.26E-04 |
| 34 | GO:0042780: tRNA 3'-end processing | 5.26E-04 |
| 35 | GO:0032504: multicellular organism reproduction | 5.26E-04 |
| 36 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 5.26E-04 |
| 37 | GO:0010581: regulation of starch biosynthetic process | 5.26E-04 |
| 38 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 5.26E-04 |
| 39 | GO:0006412: translation | 5.74E-04 |
| 40 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 7.53E-04 |
| 41 | GO:0006986: response to unfolded protein | 7.53E-04 |
| 42 | GO:2001141: regulation of RNA biosynthetic process | 7.53E-04 |
| 43 | GO:0051085: chaperone mediated protein folding requiring cofactor | 7.53E-04 |
| 44 | GO:0016556: mRNA modification | 7.53E-04 |
| 45 | GO:0045454: cell redox homeostasis | 9.84E-04 |
| 46 | GO:0015994: chlorophyll metabolic process | 9.98E-04 |
| 47 | GO:0006564: L-serine biosynthetic process | 1.26E-03 |
| 48 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.26E-03 |
| 49 | GO:0031365: N-terminal protein amino acid modification | 1.26E-03 |
| 50 | GO:0010190: cytochrome b6f complex assembly | 1.55E-03 |
| 51 | GO:0000470: maturation of LSU-rRNA | 1.55E-03 |
| 52 | GO:0016554: cytidine to uridine editing | 1.55E-03 |
| 53 | GO:0006828: manganese ion transport | 1.55E-03 |
| 54 | GO:0006508: proteolysis | 1.65E-03 |
| 55 | GO:0009854: oxidative photosynthetic carbon pathway | 1.86E-03 |
| 56 | GO:0019509: L-methionine salvage from methylthioadenosine | 1.86E-03 |
| 57 | GO:0006400: tRNA modification | 2.18E-03 |
| 58 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.18E-03 |
| 59 | GO:0010196: nonphotochemical quenching | 2.18E-03 |
| 60 | GO:0048481: plant ovule development | 2.22E-03 |
| 61 | GO:0042255: ribosome assembly | 2.52E-03 |
| 62 | GO:0006353: DNA-templated transcription, termination | 2.52E-03 |
| 63 | GO:0009735: response to cytokinin | 2.80E-03 |
| 64 | GO:0019430: removal of superoxide radicals | 2.88E-03 |
| 65 | GO:0032544: plastid translation | 2.88E-03 |
| 66 | GO:0071482: cellular response to light stimulus | 2.88E-03 |
| 67 | GO:0009657: plastid organization | 2.88E-03 |
| 68 | GO:0009793: embryo development ending in seed dormancy | 3.08E-03 |
| 69 | GO:0033384: geranyl diphosphate biosynthetic process | 3.26E-03 |
| 70 | GO:0098656: anion transmembrane transport | 3.26E-03 |
| 71 | GO:0045337: farnesyl diphosphate biosynthetic process | 3.26E-03 |
| 72 | GO:0042254: ribosome biogenesis | 3.30E-03 |
| 73 | GO:1900865: chloroplast RNA modification | 3.65E-03 |
| 74 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.65E-03 |
| 75 | GO:0045036: protein targeting to chloroplast | 4.06E-03 |
| 76 | GO:0006352: DNA-templated transcription, initiation | 4.48E-03 |
| 77 | GO:0018119: peptidyl-cysteine S-nitrosylation | 4.48E-03 |
| 78 | GO:0006816: calcium ion transport | 4.48E-03 |
| 79 | GO:0006415: translational termination | 4.48E-03 |
| 80 | GO:0006094: gluconeogenesis | 5.37E-03 |
| 81 | GO:0006096: glycolytic process | 5.73E-03 |
| 82 | GO:0010020: chloroplast fission | 5.84E-03 |
| 83 | GO:0008299: isoprenoid biosynthetic process | 7.84E-03 |
| 84 | GO:0016117: carotenoid biosynthetic process | 1.06E-02 |
| 85 | GO:0006413: translational initiation | 1.11E-02 |
| 86 | GO:0080022: primary root development | 1.12E-02 |
| 87 | GO:0008033: tRNA processing | 1.12E-02 |
| 88 | GO:0006662: glycerol ether metabolic process | 1.18E-02 |
| 89 | GO:0007018: microtubule-based movement | 1.25E-02 |
| 90 | GO:0006814: sodium ion transport | 1.25E-02 |
| 91 | GO:0016032: viral process | 1.44E-02 |
| 92 | GO:0032502: developmental process | 1.44E-02 |
| 93 | GO:0018298: protein-chromophore linkage | 2.16E-02 |
| 94 | GO:0009637: response to blue light | 2.55E-02 |
| 95 | GO:0009853: photorespiration | 2.55E-02 |
| 96 | GO:0034599: cellular response to oxidative stress | 2.63E-02 |
| 97 | GO:0030001: metal ion transport | 2.80E-02 |
| 98 | GO:0006631: fatty acid metabolic process | 2.88E-02 |
| 99 | GO:0010114: response to red light | 3.06E-02 |
| 100 | GO:0032259: methylation | 3.25E-02 |
| 101 | GO:0008152: metabolic process | 3.74E-02 |
| 102 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.87E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0046570: methylthioribulose 1-phosphate dehydratase activity | 0.00E+00 |
| 3 | GO:0043874: acireductone synthase activity | 0.00E+00 |
| 4 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 5 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 6 | GO:0005048: signal sequence binding | 0.00E+00 |
| 7 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 8 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 9 | GO:0019843: rRNA binding | 6.57E-10 |
| 10 | GO:0003723: RNA binding | 9.64E-06 |
| 11 | GO:0051087: chaperone binding | 2.41E-05 |
| 12 | GO:0004812: aminoacyl-tRNA ligase activity | 4.90E-05 |
| 13 | GO:0051082: unfolded protein binding | 1.07E-04 |
| 14 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 1.40E-04 |
| 15 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.40E-04 |
| 16 | GO:0004824: lysine-tRNA ligase activity | 1.40E-04 |
| 17 | GO:0004807: triose-phosphate isomerase activity | 1.40E-04 |
| 18 | GO:0004831: tyrosine-tRNA ligase activity | 1.40E-04 |
| 19 | GO:0003735: structural constituent of ribosome | 1.58E-04 |
| 20 | GO:0008047: enzyme activator activity | 2.09E-04 |
| 21 | GO:0016630: protochlorophyllide reductase activity | 3.20E-04 |
| 22 | GO:0047746: chlorophyllase activity | 3.20E-04 |
| 23 | GO:0004618: phosphoglycerate kinase activity | 3.20E-04 |
| 24 | GO:0004617: phosphoglycerate dehydrogenase activity | 3.20E-04 |
| 25 | GO:0000774: adenyl-nucleotide exchange factor activity | 3.20E-04 |
| 26 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.04E-04 |
| 27 | GO:0004751: ribose-5-phosphate isomerase activity | 5.26E-04 |
| 28 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 5.26E-04 |
| 29 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 5.26E-04 |
| 30 | GO:0002161: aminoacyl-tRNA editing activity | 5.26E-04 |
| 31 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 5.26E-04 |
| 32 | GO:0016149: translation release factor activity, codon specific | 7.53E-04 |
| 33 | GO:0008097: 5S rRNA binding | 7.53E-04 |
| 34 | GO:0008508: bile acid:sodium symporter activity | 7.53E-04 |
| 35 | GO:0016851: magnesium chelatase activity | 7.53E-04 |
| 36 | GO:0001053: plastid sigma factor activity | 9.98E-04 |
| 37 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 9.98E-04 |
| 38 | GO:0016987: sigma factor activity | 9.98E-04 |
| 39 | GO:0043495: protein anchor | 9.98E-04 |
| 40 | GO:0004791: thioredoxin-disulfide reductase activity | 1.05E-03 |
| 41 | GO:0003959: NADPH dehydrogenase activity | 1.26E-03 |
| 42 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.26E-03 |
| 43 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.35E-03 |
| 44 | GO:0051920: peroxiredoxin activity | 1.86E-03 |
| 45 | GO:0102391: decanoate--CoA ligase activity | 1.86E-03 |
| 46 | GO:0008236: serine-type peptidase activity | 2.11E-03 |
| 47 | GO:0019899: enzyme binding | 2.18E-03 |
| 48 | GO:0004467: long-chain fatty acid-CoA ligase activity | 2.18E-03 |
| 49 | GO:0016831: carboxy-lyase activity | 2.18E-03 |
| 50 | GO:0008235: metalloexopeptidase activity | 2.18E-03 |
| 51 | GO:0102425: myricetin 3-O-glucosyltransferase activity | 2.18E-03 |
| 52 | GO:0102360: daphnetin 3-O-glucosyltransferase activity | 2.18E-03 |
| 53 | GO:0004222: metalloendopeptidase activity | 2.45E-03 |
| 54 | GO:0047893: flavonol 3-O-glucosyltransferase activity | 2.52E-03 |
| 55 | GO:0016209: antioxidant activity | 2.52E-03 |
| 56 | GO:0008312: 7S RNA binding | 2.52E-03 |
| 57 | GO:0004033: aldo-keto reductase (NADP) activity | 2.52E-03 |
| 58 | GO:0003747: translation release factor activity | 3.26E-03 |
| 59 | GO:0004337: geranyltranstransferase activity | 3.26E-03 |
| 60 | GO:0047617: acyl-CoA hydrolase activity | 3.65E-03 |
| 61 | GO:0005384: manganese ion transmembrane transporter activity | 3.65E-03 |
| 62 | GO:0004177: aminopeptidase activity | 4.48E-03 |
| 63 | GO:0004161: dimethylallyltranstransferase activity | 4.48E-03 |
| 64 | GO:0003729: mRNA binding | 4.78E-03 |
| 65 | GO:0000049: tRNA binding | 4.92E-03 |
| 66 | GO:0005315: inorganic phosphate transmembrane transporter activity | 5.37E-03 |
| 67 | GO:0015095: magnesium ion transmembrane transporter activity | 5.37E-03 |
| 68 | GO:0031072: heat shock protein binding | 5.37E-03 |
| 69 | GO:0042803: protein homodimerization activity | 5.64E-03 |
| 70 | GO:0008266: poly(U) RNA binding | 5.84E-03 |
| 71 | GO:0004725: protein tyrosine phosphatase activity | 6.81E-03 |
| 72 | GO:0005525: GTP binding | 6.84E-03 |
| 73 | GO:0005528: FK506 binding | 7.32E-03 |
| 74 | GO:0004519: endonuclease activity | 7.71E-03 |
| 75 | GO:0022891: substrate-specific transmembrane transporter activity | 9.48E-03 |
| 76 | GO:0003727: single-stranded RNA binding | 1.01E-02 |
| 77 | GO:0008514: organic anion transmembrane transporter activity | 1.01E-02 |
| 78 | GO:0047134: protein-disulfide reductase activity | 1.06E-02 |
| 79 | GO:0050662: coenzyme binding | 1.25E-02 |
| 80 | GO:0003743: translation initiation factor activity | 1.40E-02 |
| 81 | GO:0008237: metallopeptidase activity | 1.64E-02 |
| 82 | GO:0016597: amino acid binding | 1.71E-02 |
| 83 | GO:0008168: methyltransferase activity | 1.78E-02 |
| 84 | GO:0000287: magnesium ion binding | 1.82E-02 |
| 85 | GO:0004601: peroxidase activity | 1.85E-02 |
| 86 | GO:0016168: chlorophyll binding | 1.86E-02 |
| 87 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.08E-02 |
| 88 | GO:0003746: translation elongation factor activity | 2.55E-02 |
| 89 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.63E-02 |
| 90 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.80E-02 |
| 91 | GO:0004185: serine-type carboxypeptidase activity | 3.06E-02 |
| 92 | GO:0003924: GTPase activity | 3.39E-02 |
| 93 | GO:0051287: NAD binding | 3.50E-02 |
| 94 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.78E-02 |
| 95 | GO:0003690: double-stranded DNA binding | 3.87E-02 |
| 96 | GO:0003777: microtubule motor activity | 4.06E-02 |
| 97 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 4.55E-02 |
| 98 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 4.55E-02 |
| 99 | GO:0016491: oxidoreductase activity | 4.87E-02 |
| 100 | GO:0015035: protein disulfide oxidoreductase activity | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.45E-57 |
| 2 | GO:0009570: chloroplast stroma | 1.81E-34 |
| 3 | GO:0009941: chloroplast envelope | 1.45E-24 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 5.66E-12 |
| 5 | GO:0009579: thylakoid | 1.66E-08 |
| 6 | GO:0005840: ribosome | 2.58E-06 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 1.21E-05 |
| 8 | GO:0042651: thylakoid membrane | 2.41E-05 |
| 9 | GO:0009534: chloroplast thylakoid | 2.90E-05 |
| 10 | GO:0031969: chloroplast membrane | 1.11E-04 |
| 11 | GO:0009547: plastid ribosome | 1.40E-04 |
| 12 | GO:0005759: mitochondrial matrix | 2.33E-04 |
| 13 | GO:0080085: signal recognition particle, chloroplast targeting | 3.20E-04 |
| 14 | GO:0031977: thylakoid lumen | 3.73E-04 |
| 15 | GO:0010007: magnesium chelatase complex | 5.26E-04 |
| 16 | GO:0009526: plastid envelope | 9.98E-04 |
| 17 | GO:0055035: plastid thylakoid membrane | 1.26E-03 |
| 18 | GO:0010319: stromule | 1.53E-03 |
| 19 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.88E-03 |
| 20 | GO:0000311: plastid large ribosomal subunit | 4.92E-03 |
| 21 | GO:0000312: plastid small ribosomal subunit | 5.84E-03 |
| 22 | GO:0009706: chloroplast inner membrane | 6.89E-03 |
| 23 | GO:0009654: photosystem II oxygen evolving complex | 7.84E-03 |
| 24 | GO:0043231: intracellular membrane-bounded organelle | 7.85E-03 |
| 25 | GO:0015935: small ribosomal subunit | 8.38E-03 |
| 26 | GO:0009532: plastid stroma | 8.38E-03 |
| 27 | GO:0005871: kinesin complex | 1.06E-02 |
| 28 | GO:0009536: plastid | 1.28E-02 |
| 29 | GO:0009523: photosystem II | 1.31E-02 |
| 30 | GO:0019898: extrinsic component of membrane | 1.31E-02 |
| 31 | GO:0009295: nucleoid | 1.64E-02 |
| 32 | GO:0015934: large ribosomal subunit | 2.39E-02 |
| 33 | GO:0022625: cytosolic large ribosomal subunit | 2.42E-02 |
| 34 | GO:0016020: membrane | 4.62E-02 |