Gene: AT5G39860
     

Gene description


TAIR ID: AT5G39860

Short description: basic helix-loop-helix (bHLH) DNA-binding family protein

Pathogen responsiveness: 1.04

General responsiveness: 0.42

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


regulation of transcription, DNA-templated, regulation of growth, regulation of timing of transition from vegetative to reproductive phase, brassinosteroid mediated signaling pathway, photomorphogenesis, gibberellic acid mediated signaling pathway, response to brassinosteroid, transcription, unidimensional cell growth


GO cellular component


nucleus


GO molecular function


protein binding, protein dimerization activity, transcription factor activity, sequence-specific DNA binding


Protein domain


PfamPF00010, Helix-loop-helix DNA-binding domain

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT1G24260, AT1G75080, AT2G43010

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 2

click to view PPI network

Differentially expressed condition


45 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE11807Col, mpk6 ko, water 4 hCol, mpk6 ko, Flg22 4 h-1.682.76E-03
GSE13739Col, WT, control 0 hCol, WT, G.orontii 6 h-1.971.80E-05
GSE13739Col, eds, control 0 hCol, eds, G.orontii 6 h-1.855.37E-05
GSE17464Laer, controlLaer, Alternaria brassicicola 3 d2.452.48E-07
GSE17464Laer, controlLaer, PstDC3000 12 h1.943.47E-05
GSE17464Penta, controlPenta, Alternaria brassicicola 3 d1.576.32E-04
GSE17464Penta, controlPenta, PstDC3000 12 h2.192.54E-06
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h-2.162.19E-04
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h-2.161.42E-04
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h-2.331.04E-04
GSE18329Col, wrky72_1, controlCol, wrky72_1, Hpa noco2 96 h-2.288.22E-11
GSE18329Col, wrky72_1, controlCol, wrky72_2, Hpa noco2 96 h-2.394.26E-11
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-3.894.44E-12
GSE26206Col, WT, controlCol, WT, R.solani_AG8 7 d-1.615.87E-05
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h-2.337.13E-09
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h-3.142.51E-11
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h-2.162.17E-08
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h-2.983.99E-11
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-2.324.68E-03
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.722.23E-02
GSE40544Col, WT, controlCol, WT, PstDC3000 AvrRpt2-2.955.39E-04
GSE40544Col, WT, controlCol, WT, PstDC3000 EV-3.411.31E-04
GSE40544Col, Sid2, controlCol, Sid2, PstDC3000 AvrRpt2-2.906.77E-04
GSE40544Col, Sid2, controlCol, Sid2, PstDC3000 EV-2.603.78E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-3.462.50E-13
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h-2.167.54E-10
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-3.211.11E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-2.834.85E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-2.311.09E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-2.443.67E-11
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h-2.851.82E-11
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-2.872.19E-11
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-3.366.00E-13
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h-2.364.60E-10
GSE50526Col, WT, mock 24 hCol, WT, A. brassicicola 24 h-2.621.88E-02
GSE52979Col, WT, acetoneCol, WT, acetone flg22_24 h-2.192.79E-03
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h-1.913.82E-03
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-2.511.23E-04
GSE5520Col, WT, control 10 hCol, WT, Cor- hrpS- 10 h-1.752.64E-02
GSE5520Col, WT, control 24 hCol, WT, PstDC3000 24 h-2.171.49E-03
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-4.167.60E-04
GSE6556Col, gh3.5, controlCol, gh3.5, PstDC3000 AvrRpt2 48 h-1.873.18E-04
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h-2.004.39E-03
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h-2.363.49E-03
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h-2.058.93E-03






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