co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G39860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900000: regulation of anthocyanin catabolic process	0.00E+00
2	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
3	GO:1901698: response to nitrogen compound	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0034220: ion transmembrane transport	2.87E-05
6	GO:0070509: calcium ion import	1.02E-04
7	GO:0007263: nitric oxide mediated signal transduction	1.02E-04
8	GO:0010480: microsporocyte differentiation	1.02E-04
9	GO:0006723: cuticle hydrocarbon biosynthetic process	1.02E-04
10	GO:0042547: cell wall modification involved in multidimensional cell growth	1.02E-04
11	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	1.02E-04
12	GO:0010588: cotyledon vascular tissue pattern formation	2.09E-04
13	GO:0016560: protein import into peroxisome matrix, docking	2.40E-04
14	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	2.40E-04
15	GO:0006695: cholesterol biosynthetic process	2.40E-04
16	GO:0006833: water transport	2.99E-04
17	GO:0051176: positive regulation of sulfur metabolic process	3.99E-04
18	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	3.99E-04
19	GO:0043447: alkane biosynthetic process	3.99E-04
20	GO:0071705: nitrogen compound transport	3.99E-04
21	GO:0006515: misfolded or incompletely synthesized protein catabolic process	5.73E-04
22	GO:0034059: response to anoxia	5.73E-04
23	GO:0080170: hydrogen peroxide transmembrane transport	5.73E-04
24	GO:0080022: primary root development	6.09E-04
25	GO:0010087: phloem or xylem histogenesis	6.09E-04
26	GO:0042631: cellular response to water deprivation	6.09E-04
27	GO:0030104: water homeostasis	7.62E-04
28	GO:0071249: cellular response to nitrate	7.62E-04
29	GO:0006085: acetyl-CoA biosynthetic process	7.62E-04
30	GO:0016132: brassinosteroid biosynthetic process	8.02E-04
31	GO:0006564: L-serine biosynthetic process	9.62E-04
32	GO:0009435: NAD biosynthetic process	9.62E-04
33	GO:0010405: arabinogalactan protein metabolic process	1.17E-03
34	GO:0006751: glutathione catabolic process	1.17E-03
35	GO:0016554: cytidine to uridine editing	1.17E-03
36	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.17E-03
37	GO:0000741: karyogamy	1.17E-03
38	GO:0006694: steroid biosynthetic process	1.40E-03
39	GO:0000160: phosphorelay signal transduction system	1.54E-03
40	GO:0051510: regulation of unidimensional cell growth	1.65E-03
41	GO:0048437: floral organ development	1.65E-03
42	GO:0048527: lateral root development	1.69E-03
43	GO:0009826: unidimensional cell growth	1.80E-03
44	GO:0006402: mRNA catabolic process	1.90E-03
45	GO:0009690: cytokinin metabolic process	1.90E-03
46	GO:0010078: maintenance of root meristem identity	1.90E-03
47	GO:0008610: lipid biosynthetic process	1.90E-03
48	GO:0043562: cellular response to nitrogen levels	2.17E-03
49	GO:0009808: lignin metabolic process	2.17E-03
50	GO:0009723: response to ethylene	2.26E-03
51	GO:0010206: photosystem II repair	2.45E-03
52	GO:0033384: geranyl diphosphate biosynthetic process	2.45E-03
53	GO:0009060: aerobic respiration	2.45E-03
54	GO:0009051: pentose-phosphate shunt, oxidative branch	2.45E-03
55	GO:0045337: farnesyl diphosphate biosynthetic process	2.45E-03
56	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.58E-03
57	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	2.74E-03
58	GO:0006779: porphyrin-containing compound biosynthetic process	2.74E-03
59	GO:1900865: chloroplast RNA modification	2.74E-03
60	GO:0006782: protoporphyrinogen IX biosynthetic process	3.05E-03
61	GO:0009736: cytokinin-activated signaling pathway	3.19E-03
62	GO:0016485: protein processing	3.36E-03
63	GO:0048229: gametophyte development	3.36E-03
64	GO:0009684: indoleacetic acid biosynthetic process	3.36E-03
65	GO:0015706: nitrate transport	3.69E-03
66	GO:0048367: shoot system development	3.89E-03
67	GO:0009626: plant-type hypersensitive response	4.01E-03
68	GO:2000028: regulation of photoperiodism, flowering	4.02E-03
69	GO:0010075: regulation of meristem growth	4.02E-03
70	GO:0006629: lipid metabolic process	4.05E-03
71	GO:0009934: regulation of meristem structural organization	4.37E-03
72	GO:0048467: gynoecium development	4.37E-03
73	GO:0010030: positive regulation of seed germination	4.72E-03
74	GO:0010167: response to nitrate	4.72E-03
75	GO:0010025: wax biosynthetic process	5.09E-03
76	GO:0006418: tRNA aminoacylation for protein translation	5.85E-03
77	GO:0007017: microtubule-based process	5.85E-03
78	GO:0016226: iron-sulfur cluster assembly	6.64E-03
79	GO:0035428: hexose transmembrane transport	6.64E-03
80	GO:0009814: defense response, incompatible interaction	6.64E-03
81	GO:0040007: growth	7.06E-03
82	GO:0007623: circadian rhythm	7.80E-03
83	GO:0045490: pectin catabolic process	7.80E-03
84	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	7.91E-03
85	GO:0048653: anther development	8.35E-03
86	GO:0042335: cuticle development	8.35E-03
87	GO:0042391: regulation of membrane potential	8.35E-03
88	GO:0006810: transport	8.79E-03
89	GO:0009958: positive gravitropism	8.80E-03
90	GO:0010197: polar nucleus fusion	8.80E-03
91	GO:0046323: glucose import	8.80E-03
92	GO:0009741: response to brassinosteroid	8.80E-03
93	GO:0010305: leaf vascular tissue pattern formation	8.80E-03
94	GO:0048825: cotyledon development	9.73E-03
95	GO:0009851: auxin biosynthetic process	9.73E-03
96	GO:0009791: post-embryonic development	9.73E-03
97	GO:0071554: cell wall organization or biogenesis	1.02E-02
98	GO:0048235: pollen sperm cell differentiation	1.07E-02
99	GO:0030163: protein catabolic process	1.12E-02
100	GO:0071805: potassium ion transmembrane transport	1.22E-02
101	GO:0016126: sterol biosynthetic process	1.32E-02
102	GO:0015995: chlorophyll biosynthetic process	1.48E-02
103	GO:0007165: signal transduction	1.49E-02
104	GO:0016311: dephosphorylation	1.54E-02
105	GO:0048481: plant ovule development	1.60E-02
106	GO:0046777: protein autophosphorylation	1.61E-02
107	GO:0009834: plant-type secondary cell wall biogenesis	1.71E-02
108	GO:0030001: metal ion transport	2.07E-02
109	GO:0006839: mitochondrial transport	2.07E-02
110	GO:0008152: metabolic process	2.45E-02
111	GO:0006855: drug transmembrane transport	2.52E-02
112	GO:0006813: potassium ion transport	2.80E-02
113	GO:0051603: proteolysis involved in cellular protein catabolic process	2.86E-02
114	GO:0009651: response to salt stress	3.02E-02
115	GO:0048316: seed development	3.22E-02
116	GO:0005975: carbohydrate metabolic process	3.45E-02
117	GO:0042545: cell wall modification	3.52E-02
118	GO:0009908: flower development	3.56E-02
119	GO:0009735: response to cytokinin	3.60E-02
120	GO:0009742: brassinosteroid mediated signaling pathway	3.75E-02
121	GO:0006468: protein phosphorylation	3.85E-02
122	GO:0009416: response to light stimulus	3.93E-02
123	GO:0042744: hydrogen peroxide catabolic process	4.62E-02
124	GO:0055085: transmembrane transport	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
2	GO:0050614: delta24-sterol reductase activity	0.00E+00
3	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0008987: quinolinate synthetase A activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0005528: FK506 binding	1.02E-05
8	GO:0015250: water channel activity	8.01E-05
9	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	1.02E-04
10	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	1.02E-04
11	GO:0000248: C-5 sterol desaturase activity	1.02E-04
12	GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	1.02E-04
13	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	1.02E-04
14	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	2.40E-04
15	GO:0003839: gamma-glutamylcyclotransferase activity	2.40E-04
16	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	2.40E-04
17	GO:0004617: phosphoglycerate dehydrogenase activity	2.40E-04
18	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.92E-04
19	GO:0002161: aminoacyl-tRNA editing activity	3.99E-04
20	GO:0017057: 6-phosphogluconolactonase activity	5.73E-04
21	GO:0001872: (1->3)-beta-D-glucan binding	5.73E-04
22	GO:0003878: ATP citrate synthase activity	5.73E-04
23	GO:0000156: phosphorelay response regulator activity	9.07E-04
24	GO:0016846: carbon-sulfur lyase activity	9.62E-04
25	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.17E-03
26	GO:0042578: phosphoric ester hydrolase activity	1.17E-03
27	GO:0008236: serine-type peptidase activity	1.40E-03
28	GO:0005242: inward rectifier potassium channel activity	1.40E-03
29	GO:0005261: cation channel activity	1.40E-03
30	GO:0046872: metal ion binding	2.07E-03
31	GO:0004337: geranyltranstransferase activity	2.45E-03
32	GO:0008047: enzyme activator activity	3.05E-03
33	GO:0004161: dimethylallyltranstransferase activity	3.36E-03
34	GO:0000049: tRNA binding	3.69E-03
35	GO:0005262: calcium channel activity	4.02E-03
36	GO:0004565: beta-galactosidase activity	4.02E-03
37	GO:0030552: cAMP binding	4.72E-03
38	GO:0030553: cGMP binding	4.72E-03
39	GO:0005216: ion channel activity	5.85E-03
40	GO:0015079: potassium ion transmembrane transporter activity	5.85E-03
41	GO:0016829: lyase activity	6.12E-03
42	GO:0004176: ATP-dependent peptidase activity	6.24E-03
43	GO:0033612: receptor serine/threonine kinase binding	6.24E-03
44	GO:0019706: protein-cysteine S-palmitoyltransferase activity	6.24E-03
45	GO:0004252: serine-type endopeptidase activity	6.28E-03
46	GO:0030570: pectate lyase activity	7.06E-03
47	GO:0004812: aminoacyl-tRNA ligase activity	7.91E-03
48	GO:0030551: cyclic nucleotide binding	8.35E-03
49	GO:0005355: glucose transmembrane transporter activity	9.26E-03
50	GO:0004518: nuclease activity	1.07E-02
51	GO:0005200: structural constituent of cytoskeleton	1.22E-02
52	GO:0016413: O-acetyltransferase activity	1.27E-02
53	GO:0016597: amino acid binding	1.27E-02
54	GO:0005516: calmodulin binding	1.41E-02
55	GO:0030247: polysaccharide binding	1.48E-02
56	GO:0005096: GTPase activator activity	1.65E-02
57	GO:0015238: drug transmembrane transporter activity	1.65E-02
58	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.77E-02
59	GO:0004674: protein serine/threonine kinase activity	1.81E-02
60	GO:0003993: acid phosphatase activity	1.95E-02
61	GO:0051539: 4 iron, 4 sulfur cluster binding	2.07E-02
62	GO:0004185: serine-type carboxypeptidase activity	2.26E-02
63	GO:0003824: catalytic activity	2.30E-02
64	GO:0035091: phosphatidylinositol binding	2.39E-02
65	GO:0051287: NAD binding	2.59E-02
66	GO:0016298: lipase activity	2.86E-02
67	GO:0016491: oxidoreductase activity	2.89E-02
68	GO:0045330: aspartyl esterase activity	3.01E-02
69	GO:0004672: protein kinase activity	3.31E-02
70	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.37E-02
71	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.37E-02
72	GO:0030599: pectinesterase activity	3.44E-02
73	GO:0016758: transferase activity, transferring hexosyl groups	4.14E-02
74	GO:0015144: carbohydrate transmembrane transporter activity	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0043233: organelle lumen	0.00E+00
2	GO:0043674: columella	1.02E-04
3	GO:0005782: peroxisomal matrix	3.99E-04
4	GO:0005886: plasma membrane	5.60E-04
5	GO:0009346: citrate lyase complex	5.73E-04
6	GO:0009543: chloroplast thylakoid lumen	7.34E-04
7	GO:0005887: integral component of plasma membrane	1.12E-03
8	GO:0042807: central vacuole	1.65E-03
9	GO:0009533: chloroplast stromal thylakoid	1.65E-03
10	GO:0045298: tubulin complex	2.45E-03
11	GO:0030659: cytoplasmic vesicle membrane	4.37E-03
12	GO:0016021: integral component of membrane	8.03E-03
13	GO:0046658: anchored component of plasma membrane	1.03E-02
14	GO:0030529: intracellular ribonucleoprotein complex	1.32E-02
15	GO:0016020: membrane	1.44E-02
16	GO:0031225: anchored component of membrane	1.47E-02
17	GO:0009507: chloroplast	1.81E-02
18	GO:0005773: vacuole	2.05E-02
19	GO:0031977: thylakoid lumen	2.13E-02
20	GO:0009570: chloroplast stroma	2.93E-02
21	GO:0005789: endoplasmic reticulum membrane	3.48E-02
22	GO:0005777: peroxisome	4.51E-02
23	GO:0009534: chloroplast thylakoid	4.74E-02