GO Enrichment Analysis of Co-expressed Genes with
AT5G39860
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 2 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 3 | GO:0042793: transcription from plastid promoter | 1.83E-05 |
| 4 | GO:0005978: glycogen biosynthetic process | 4.65E-05 |
| 5 | GO:0010442: guard cell morphogenesis | 8.78E-05 |
| 6 | GO:0043987: histone H3-S10 phosphorylation | 8.78E-05 |
| 7 | GO:0006949: syncytium formation | 1.06E-04 |
| 8 | GO:0019388: galactose catabolic process | 2.08E-04 |
| 9 | GO:0018026: peptidyl-lysine monomethylation | 2.08E-04 |
| 10 | GO:0071497: cellular response to freezing | 2.08E-04 |
| 11 | GO:0071452: cellular response to singlet oxygen | 2.08E-04 |
| 12 | GO:0052541: plant-type cell wall cellulose metabolic process | 2.08E-04 |
| 13 | GO:1901529: positive regulation of anion channel activity | 2.08E-04 |
| 14 | GO:0019953: sexual reproduction | 2.99E-04 |
| 15 | GO:0030261: chromosome condensation | 3.48E-04 |
| 16 | GO:0007052: mitotic spindle organization | 3.48E-04 |
| 17 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 3.48E-04 |
| 18 | GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process | 3.48E-04 |
| 19 | GO:0009647: skotomorphogenesis | 5.01E-04 |
| 20 | GO:0046739: transport of virus in multicellular host | 5.01E-04 |
| 21 | GO:0009590: detection of gravity | 5.01E-04 |
| 22 | GO:0032465: regulation of cytokinesis | 5.01E-04 |
| 23 | GO:0016572: histone phosphorylation | 5.01E-04 |
| 24 | GO:0019252: starch biosynthetic process | 6.17E-04 |
| 25 | GO:0006808: regulation of nitrogen utilization | 6.66E-04 |
| 26 | GO:1901141: regulation of lignin biosynthetic process | 6.66E-04 |
| 27 | GO:0010583: response to cyclopentenone | 7.02E-04 |
| 28 | GO:0009828: plant-type cell wall loosening | 7.93E-04 |
| 29 | GO:2000033: regulation of seed dormancy process | 1.23E-03 |
| 30 | GO:0000160: phosphorelay signal transduction system | 1.26E-03 |
| 31 | GO:0009658: chloroplast organization | 1.45E-03 |
| 32 | GO:0001522: pseudouridine synthesis | 1.66E-03 |
| 33 | GO:0009642: response to light intensity | 1.66E-03 |
| 34 | GO:0042255: ribosome assembly | 1.66E-03 |
| 35 | GO:0006353: DNA-templated transcription, termination | 1.66E-03 |
| 36 | GO:0006631: fatty acid metabolic process | 1.79E-03 |
| 37 | GO:0010497: plasmodesmata-mediated intercellular transport | 1.89E-03 |
| 38 | GO:0009640: photomorphogenesis | 1.94E-03 |
| 39 | GO:0010206: photosystem II repair | 2.14E-03 |
| 40 | GO:0009835: fruit ripening | 2.14E-03 |
| 41 | GO:0009664: plant-type cell wall organization | 2.43E-03 |
| 42 | GO:0009736: cytokinin-activated signaling pathway | 2.61E-03 |
| 43 | GO:0045036: protein targeting to chloroplast | 2.65E-03 |
| 44 | GO:0010162: seed dormancy process | 2.65E-03 |
| 45 | GO:0051026: chiasma assembly | 2.65E-03 |
| 46 | GO:0000266: mitochondrial fission | 3.21E-03 |
| 47 | GO:0012501: programmed cell death | 3.21E-03 |
| 48 | GO:0030048: actin filament-based movement | 3.50E-03 |
| 49 | GO:0006006: glucose metabolic process | 3.50E-03 |
| 50 | GO:2000012: regulation of auxin polar transport | 3.50E-03 |
| 51 | GO:0007034: vacuolar transport | 3.80E-03 |
| 52 | GO:0010020: chloroplast fission | 3.80E-03 |
| 53 | GO:0080188: RNA-directed DNA methylation | 4.10E-03 |
| 54 | GO:0006071: glycerol metabolic process | 4.42E-03 |
| 55 | GO:0080147: root hair cell development | 4.74E-03 |
| 56 | GO:0010026: trichome differentiation | 5.07E-03 |
| 57 | GO:0007017: microtubule-based process | 5.07E-03 |
| 58 | GO:0048278: vesicle docking | 5.42E-03 |
| 59 | GO:0006508: proteolysis | 5.57E-03 |
| 60 | GO:0009693: ethylene biosynthetic process | 6.12E-03 |
| 61 | GO:0010182: sugar mediated signaling pathway | 7.62E-03 |
| 62 | GO:0061025: membrane fusion | 8.02E-03 |
| 63 | GO:0009791: post-embryonic development | 8.42E-03 |
| 64 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 8.83E-03 |
| 65 | GO:0071554: cell wall organization or biogenesis | 8.83E-03 |
| 66 | GO:0009826: unidimensional cell growth | 9.46E-03 |
| 67 | GO:0030163: protein catabolic process | 9.67E-03 |
| 68 | GO:0071281: cellular response to iron ion | 9.67E-03 |
| 69 | GO:0007049: cell cycle | 1.10E-02 |
| 70 | GO:0000910: cytokinesis | 1.10E-02 |
| 71 | GO:0010027: thylakoid membrane organization | 1.14E-02 |
| 72 | GO:0006906: vesicle fusion | 1.24E-02 |
| 73 | GO:0009793: embryo development ending in seed dormancy | 1.28E-02 |
| 74 | GO:0015995: chlorophyll biosynthetic process | 1.28E-02 |
| 75 | GO:0009813: flavonoid biosynthetic process | 1.43E-02 |
| 76 | GO:0009631: cold acclimation | 1.53E-02 |
| 77 | GO:0016042: lipid catabolic process | 1.76E-02 |
| 78 | GO:0006839: mitochondrial transport | 1.79E-02 |
| 79 | GO:0006887: exocytosis | 1.84E-02 |
| 80 | GO:0048364: root development | 1.89E-02 |
| 81 | GO:0005975: carbohydrate metabolic process | 2.67E-02 |
| 82 | GO:0048367: shoot system development | 2.78E-02 |
| 83 | GO:0009620: response to fungus | 2.91E-02 |
| 84 | GO:0009735: response to cytokinin | 2.93E-02 |
| 85 | GO:0009740: gibberellic acid mediated signaling pathway | 2.97E-02 |
| 86 | GO:0009058: biosynthetic process | 3.78E-02 |
| 87 | GO:0006633: fatty acid biosynthetic process | 4.28E-02 |
| 88 | GO:0006413: translational initiation | 4.35E-02 |
| 89 | GO:0040008: regulation of growth | 4.43E-02 |
| 90 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047661: amino-acid racemase activity | 0.00E+00 |
| 2 | GO:0009374: biotin binding | 8.78E-05 |
| 3 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 2.08E-04 |
| 4 | GO:0016630: protochlorophyllide reductase activity | 2.08E-04 |
| 5 | GO:0004614: phosphoglucomutase activity | 2.08E-04 |
| 6 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 2.08E-04 |
| 7 | GO:0035175: histone kinase activity (H3-S10 specific) | 2.08E-04 |
| 8 | GO:0005504: fatty acid binding | 3.48E-04 |
| 9 | GO:0070180: large ribosomal subunit rRNA binding | 3.48E-04 |
| 10 | GO:0070330: aromatase activity | 3.48E-04 |
| 11 | GO:0043169: cation binding | 3.48E-04 |
| 12 | GO:0017150: tRNA dihydrouridine synthase activity | 3.48E-04 |
| 13 | GO:0045430: chalcone isomerase activity | 6.66E-04 |
| 14 | GO:0016279: protein-lysine N-methyltransferase activity | 6.66E-04 |
| 15 | GO:0000156: phosphorelay response regulator activity | 7.47E-04 |
| 16 | GO:0018685: alkane 1-monooxygenase activity | 8.44E-04 |
| 17 | GO:0003989: acetyl-CoA carboxylase activity | 8.44E-04 |
| 18 | GO:0004556: alpha-amylase activity | 1.03E-03 |
| 19 | GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity | 1.66E-03 |
| 20 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 2.14E-03 |
| 21 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 2.93E-03 |
| 22 | GO:0009982: pseudouridine synthase activity | 3.50E-03 |
| 23 | GO:0003774: motor activity | 3.80E-03 |
| 24 | GO:0004190: aspartic-type endopeptidase activity | 4.10E-03 |
| 25 | GO:0004176: ATP-dependent peptidase activity | 5.42E-03 |
| 26 | GO:0003727: single-stranded RNA binding | 6.48E-03 |
| 27 | GO:0016853: isomerase activity | 8.02E-03 |
| 28 | GO:0051015: actin filament binding | 9.67E-03 |
| 29 | GO:0005200: structural constituent of cytoskeleton | 1.05E-02 |
| 30 | GO:0008237: metallopeptidase activity | 1.05E-02 |
| 31 | GO:0016413: O-acetyltransferase activity | 1.10E-02 |
| 32 | GO:0008233: peptidase activity | 1.20E-02 |
| 33 | GO:0008236: serine-type peptidase activity | 1.33E-02 |
| 34 | GO:0052689: carboxylic ester hydrolase activity | 1.35E-02 |
| 35 | GO:0004222: metalloendopeptidase activity | 1.48E-02 |
| 36 | GO:0000149: SNARE binding | 1.74E-02 |
| 37 | GO:0042393: histone binding | 1.79E-02 |
| 38 | GO:0003924: GTPase activity | 1.81E-02 |
| 39 | GO:0009055: electron carrier activity | 1.94E-02 |
| 40 | GO:0005484: SNAP receptor activity | 1.95E-02 |
| 41 | GO:0043621: protein self-association | 2.06E-02 |
| 42 | GO:0035091: phosphatidylinositol binding | 2.06E-02 |
| 43 | GO:0005198: structural molecule activity | 2.12E-02 |
| 44 | GO:0003690: double-stranded DNA binding | 2.47E-02 |
| 45 | GO:0016298: lipase activity | 2.47E-02 |
| 46 | GO:0004672: protein kinase activity | 2.56E-02 |
| 47 | GO:0004650: polygalacturonase activity | 2.91E-02 |
| 48 | GO:0015035: protein disulfide oxidoreductase activity | 3.17E-02 |
| 49 | GO:0004386: helicase activity | 3.30E-02 |
| 50 | GO:0019843: rRNA binding | 3.64E-02 |
| 51 | GO:0030170: pyridoxal phosphate binding | 3.92E-02 |
| 52 | GO:0004252: serine-type endopeptidase activity | 3.92E-02 |
| 53 | GO:0008017: microtubule binding | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 4.16E-07 |
| 2 | GO:0000796: condensin complex | 8.78E-05 |
| 3 | GO:0009508: plastid chromosome | 1.68E-04 |
| 4 | GO:0032133: chromosome passenger complex | 2.08E-04 |
| 5 | GO:0000780: condensed nuclear chromosome, centromeric region | 2.08E-04 |
| 6 | GO:0051233: spindle midzone | 2.08E-04 |
| 7 | GO:0009534: chloroplast thylakoid | 3.10E-04 |
| 8 | GO:0009317: acetyl-CoA carboxylase complex | 3.48E-04 |
| 9 | GO:0042646: plastid nucleoid | 5.01E-04 |
| 10 | GO:0030286: dynein complex | 6.66E-04 |
| 11 | GO:0009295: nucleoid | 8.40E-04 |
| 12 | GO:0009507: chloroplast | 9.67E-04 |
| 13 | GO:0005655: nucleolar ribonuclease P complex | 1.23E-03 |
| 14 | GO:0000815: ESCRT III complex | 1.23E-03 |
| 15 | GO:0005762: mitochondrial large ribosomal subunit | 1.23E-03 |
| 16 | GO:0009501: amyloplast | 1.66E-03 |
| 17 | GO:0042644: chloroplast nucleoid | 2.14E-03 |
| 18 | GO:0005876: spindle microtubule | 2.39E-03 |
| 19 | GO:0016459: myosin complex | 2.65E-03 |
| 20 | GO:0090404: pollen tube tip | 2.93E-03 |
| 21 | GO:0005884: actin filament | 2.93E-03 |
| 22 | GO:0009941: chloroplast envelope | 3.52E-03 |
| 23 | GO:0015629: actin cytoskeleton | 6.12E-03 |
| 24 | GO:0009570: chloroplast stroma | 6.77E-03 |
| 25 | GO:0046658: anchored component of plasma membrane | 8.41E-03 |
| 26 | GO:0009504: cell plate | 8.42E-03 |
| 27 | GO:0031965: nuclear membrane | 8.42E-03 |
| 28 | GO:0009506: plasmodesma | 9.68E-03 |
| 29 | GO:0010319: stromule | 1.05E-02 |
| 30 | GO:0031225: anchored component of membrane | 1.13E-02 |
| 31 | GO:0031977: thylakoid lumen | 1.84E-02 |
| 32 | GO:0031201: SNARE complex | 1.84E-02 |
| 33 | GO:0009536: plastid | 2.04E-02 |
| 34 | GO:0005856: cytoskeleton | 2.12E-02 |
| 35 | GO:0005618: cell wall | 2.84E-02 |
| 36 | GO:0012505: endomembrane system | 3.04E-02 |
| 37 | GO:0009543: chloroplast thylakoid lumen | 3.64E-02 |
| 38 | GO:0005623: cell | 3.71E-02 |
| 39 | GO:0009524: phragmoplast | 3.78E-02 |