gene detail

Gene description

TAIR ID: AT5G16715

Short description: ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases

Pathogen responsiveness: -0.62

General responsiveness: 0.54

Orthologous

Rice:

OS07G0163500 OS03G0694900 OS01G0120300

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

tRNA aminoacylation for protein translation, valyl-tRNA aminoacylation, embryo development ending in seed dormancy

GO cellular component

chloroplast stroma, chloroplast, cytoplasm

GO molecular function

valine-tRNA ligase activity, aminoacyl-tRNA ligase activity

Protein domain

Pfam	PF00133, tRNA synthetases class I (I, L, M and V)
Pfam	PF08264, Anticodon-binding domain of tRNA
Pfam	PF10458, Valyl tRNA synthetase tRNA binding arm

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath00970: Aminoacyl-tRNA biosynthesis

Transcriptional regulation

Regulator:
AT5G13790

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.62	7.01E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-3.17	2.54E-10
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.77	1.09E-02
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.74	2.22E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.73	6.07E-13
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.53	3.00E-06
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-1.67	5.73E-13