co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G16715

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042407: cristae formation	0.00E+00
2	GO:0042821: pyridoxal biosynthetic process	0.00E+00
3	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
4	GO:0016553: base conversion or substitution editing	0.00E+00
5	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
6	GO:0060416: response to growth hormone	0.00E+00
7	GO:0097164: ammonium ion metabolic process	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:0006399: tRNA metabolic process	0.00E+00
10	GO:0070125: mitochondrial translational elongation	0.00E+00
11	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
12	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
13	GO:0006642: triglyceride mobilization	0.00E+00
14	GO:0006223: uracil salvage	0.00E+00
15	GO:0009658: chloroplast organization	6.29E-11
16	GO:0032544: plastid translation	5.37E-10
17	GO:0010027: thylakoid membrane organization	9.47E-10
18	GO:0015995: chlorophyll biosynthetic process	1.78E-09
19	GO:1901259: chloroplast rRNA processing	2.05E-06
20	GO:0006412: translation	4.30E-06
21	GO:0042254: ribosome biogenesis	5.82E-06
22	GO:0009790: embryo development	1.08E-05
23	GO:0006782: protoporphyrinogen IX biosynthetic process	1.82E-05
24	GO:0045038: protein import into chloroplast thylakoid membrane	6.89E-05
25	GO:0006655: phosphatidylglycerol biosynthetic process	1.01E-04
26	GO:0015979: photosynthesis	1.29E-04
27	GO:0042372: phylloquinone biosynthetic process	1.39E-04
28	GO:0006353: DNA-templated transcription, termination	2.32E-04
29	GO:0043489: RNA stabilization	2.51E-04
30	GO:1904966: positive regulation of vitamin E biosynthetic process	2.51E-04
31	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	2.51E-04
32	GO:1904964: positive regulation of phytol biosynthetic process	2.51E-04
33	GO:0042371: vitamin K biosynthetic process	2.51E-04
34	GO:0006436: tryptophanyl-tRNA aminoacylation	2.51E-04
35	GO:1902458: positive regulation of stomatal opening	2.51E-04
36	GO:0034337: RNA folding	2.51E-04
37	GO:0009443: pyridoxal 5'-phosphate salvage	2.51E-04
38	GO:0071482: cellular response to light stimulus	2.86E-04
39	GO:0006783: heme biosynthetic process	3.46E-04
40	GO:0070981: L-asparagine biosynthetic process	5.53E-04
41	GO:0006423: cysteinyl-tRNA aminoacylation	5.53E-04
42	GO:0018026: peptidyl-lysine monomethylation	5.53E-04
43	GO:0080148: negative regulation of response to water deprivation	5.53E-04
44	GO:0006529: asparagine biosynthetic process	5.53E-04
45	GO:0008616: queuosine biosynthetic process	5.53E-04
46	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.53E-04
47	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.53E-04
48	GO:0006352: DNA-templated transcription, initiation	5.54E-04
49	GO:0009793: embryo development ending in seed dormancy	6.31E-04
50	GO:0016024: CDP-diacylglycerol biosynthetic process	6.33E-04
51	GO:0006954: inflammatory response	8.99E-04
52	GO:0090391: granum assembly	8.99E-04
53	GO:0019563: glycerol catabolic process	8.99E-04
54	GO:0006518: peptide metabolic process	8.99E-04
55	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	8.99E-04
56	GO:0051604: protein maturation	8.99E-04
57	GO:0032504: multicellular organism reproduction	8.99E-04
58	GO:0006165: nucleoside diphosphate phosphorylation	1.28E-03
59	GO:0006228: UTP biosynthetic process	1.28E-03
60	GO:0006424: glutamyl-tRNA aminoacylation	1.28E-03
61	GO:0046739: transport of virus in multicellular host	1.28E-03
62	GO:0016556: mRNA modification	1.28E-03
63	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.28E-03
64	GO:2001141: regulation of RNA biosynthetic process	1.28E-03
65	GO:0051085: chaperone mediated protein folding requiring cofactor	1.28E-03
66	GO:0010239: chloroplast mRNA processing	1.28E-03
67	GO:0006241: CTP biosynthetic process	1.28E-03
68	GO:0044206: UMP salvage	1.71E-03
69	GO:0006749: glutathione metabolic process	1.71E-03
70	GO:0006021: inositol biosynthetic process	1.71E-03
71	GO:0071483: cellular response to blue light	1.71E-03
72	GO:0006808: regulation of nitrogen utilization	1.71E-03
73	GO:0006183: GTP biosynthetic process	1.71E-03
74	GO:0009306: protein secretion	1.73E-03
75	GO:0009409: response to cold	1.73E-03
76	GO:0016117: carotenoid biosynthetic process	1.87E-03
77	GO:0032543: mitochondrial translation	2.19E-03
78	GO:0043097: pyrimidine nucleoside salvage	2.19E-03
79	GO:0006564: L-serine biosynthetic process	2.19E-03
80	GO:0010236: plastoquinone biosynthetic process	2.19E-03
81	GO:0016123: xanthophyll biosynthetic process	2.19E-03
82	GO:0009247: glycolipid biosynthetic process	2.19E-03
83	GO:0042793: transcription from plastid promoter	2.70E-03
84	GO:0006206: pyrimidine nucleobase metabolic process	2.70E-03
85	GO:0010190: cytochrome b6f complex assembly	2.70E-03
86	GO:0032973: amino acid export	2.70E-03
87	GO:0046855: inositol phosphate dephosphorylation	2.70E-03
88	GO:0009117: nucleotide metabolic process	2.70E-03
89	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.70E-03
90	GO:0032502: developmental process	2.86E-03
91	GO:0042026: protein refolding	3.24E-03
92	GO:0030488: tRNA methylation	3.24E-03
93	GO:0009854: oxidative photosynthetic carbon pathway	3.24E-03
94	GO:0010019: chloroplast-nucleus signaling pathway	3.24E-03
95	GO:0010555: response to mannitol	3.24E-03
96	GO:0009955: adaxial/abaxial pattern specification	3.24E-03
97	GO:0006400: tRNA modification	3.82E-03
98	GO:0009610: response to symbiotic fungus	3.82E-03
99	GO:0009395: phospholipid catabolic process	3.82E-03
100	GO:0009772: photosynthetic electron transport in photosystem II	3.82E-03
101	GO:0043090: amino acid import	3.82E-03
102	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.82E-03
103	GO:0042255: ribosome assembly	4.44E-03
104	GO:0006605: protein targeting	4.44E-03
105	GO:0019375: galactolipid biosynthetic process	4.44E-03
106	GO:0009704: de-etiolation	4.44E-03
107	GO:2000070: regulation of response to water deprivation	4.44E-03
108	GO:0052543: callose deposition in cell wall	4.44E-03
109	GO:0048564: photosystem I assembly	4.44E-03
110	GO:0009642: response to light intensity	4.44E-03
111	GO:0010497: plasmodesmata-mediated intercellular transport	5.08E-03
112	GO:0009657: plastid organization	5.08E-03
113	GO:0017004: cytochrome complex assembly	5.08E-03
114	GO:0009451: RNA modification	5.46E-03
115	GO:0080144: amino acid homeostasis	5.75E-03
116	GO:0043067: regulation of programmed cell death	6.46E-03
117	GO:0006779: porphyrin-containing compound biosynthetic process	6.46E-03
118	GO:0009089: lysine biosynthetic process via diaminopimelate	7.96E-03
119	GO:0009073: aromatic amino acid family biosynthetic process	7.96E-03
120	GO:0006415: translational termination	7.96E-03
121	GO:0018119: peptidyl-cysteine S-nitrosylation	7.96E-03
122	GO:0009773: photosynthetic electron transport in photosystem I	7.96E-03
123	GO:0045037: protein import into chloroplast stroma	8.75E-03
124	GO:0006790: sulfur compound metabolic process	8.75E-03
125	GO:0010628: positive regulation of gene expression	9.57E-03
126	GO:0006094: gluconeogenesis	9.57E-03
127	GO:0009735: response to cytokinin	9.94E-03
128	GO:0010020: chloroplast fission	1.04E-02
129	GO:0019253: reductive pentose-phosphate cycle	1.04E-02
130	GO:0006541: glutamine metabolic process	1.04E-02
131	GO:0019853: L-ascorbic acid biosynthetic process	1.13E-02
132	GO:0090351: seedling development	1.13E-02
133	GO:0046854: phosphatidylinositol phosphorylation	1.13E-02
134	GO:0006636: unsaturated fatty acid biosynthetic process	1.22E-02
135	GO:0080167: response to karrikin	1.22E-02
136	GO:0019344: cysteine biosynthetic process	1.31E-02
137	GO:0009116: nucleoside metabolic process	1.31E-02
138	GO:0006096: glycolytic process	1.32E-02
139	GO:0006418: tRNA aminoacylation for protein translation	1.41E-02
140	GO:0016114: terpenoid biosynthetic process	1.50E-02
141	GO:0045454: cell redox homeostasis	1.53E-02
142	GO:0016226: iron-sulfur cluster assembly	1.60E-02
143	GO:0007005: mitochondrion organization	1.60E-02
144	GO:0006457: protein folding	1.68E-02
145	GO:0009411: response to UV	1.71E-02
146	GO:0080022: primary root development	2.02E-02
147	GO:0008033: tRNA processing	2.02E-02
148	GO:0000413: protein peptidyl-prolyl isomerization	2.02E-02
149	GO:0010197: polar nucleus fusion	2.14E-02
150	GO:0009741: response to brassinosteroid	2.14E-02
151	GO:0009646: response to absence of light	2.25E-02
152	GO:0008654: phospholipid biosynthetic process	2.36E-02
153	GO:0006633: fatty acid biosynthetic process	2.50E-02
154	GO:0006413: translational initiation	2.56E-02
155	GO:0040008: regulation of growth	2.63E-02
156	GO:0055114: oxidation-reduction process	2.93E-02
157	GO:0009627: systemic acquired resistance	3.49E-02
158	GO:0048481: plant ovule development	3.90E-02
159	GO:0018298: protein-chromophore linkage	3.90E-02
160	GO:0008219: cell death	3.90E-02
161	GO:0000160: phosphorelay signal transduction system	4.04E-02
162	GO:0009407: toxin catabolic process	4.18E-02
163	GO:0009631: cold acclimation	4.32E-02
164	GO:0048527: lateral root development	4.32E-02
165	GO:0045087: innate immune response	4.61E-02
166	GO:0009637: response to blue light	4.61E-02
167	GO:0009853: photorespiration	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
2	GO:0008887: glycerate kinase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
5	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
6	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
7	GO:0046408: chlorophyll synthetase activity	0.00E+00
8	GO:0005048: signal sequence binding	0.00E+00
9	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
10	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
11	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
12	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
13	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
14	GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding	0.00E+00
15	GO:0019843: rRNA binding	2.66E-14
16	GO:0003735: structural constituent of ribosome	6.64E-07
17	GO:0070402: NADPH binding	1.05E-05
18	GO:0016851: magnesium chelatase activity	2.38E-05
19	GO:0001053: plastid sigma factor activity	4.33E-05
20	GO:0016987: sigma factor activity	4.33E-05
21	GO:0051920: peroxiredoxin activity	1.39E-04
22	GO:0016209: antioxidant activity	2.32E-04
23	GO:0004071: aspartate-ammonia ligase activity	2.51E-04
24	GO:0009374: biotin binding	2.51E-04
25	GO:0004830: tryptophan-tRNA ligase activity	2.51E-04
26	GO:0004328: formamidase activity	2.51E-04
27	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.51E-04
28	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.51E-04
29	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.51E-04
30	GO:0004807: triose-phosphate isomerase activity	2.51E-04
31	GO:0052833: inositol monophosphate 4-phosphatase activity	5.53E-04
32	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.53E-04
33	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	5.53E-04
34	GO:0010291: carotene beta-ring hydroxylase activity	5.53E-04
35	GO:0042389: omega-3 fatty acid desaturase activity	5.53E-04
36	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.53E-04
37	GO:0004617: phosphoglycerate dehydrogenase activity	5.53E-04
38	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	5.53E-04
39	GO:0052832: inositol monophosphate 3-phosphatase activity	5.53E-04
40	GO:0004817: cysteine-tRNA ligase activity	5.53E-04
41	GO:0008479: queuine tRNA-ribosyltransferase activity	5.53E-04
42	GO:0008934: inositol monophosphate 1-phosphatase activity	5.53E-04
43	GO:0004148: dihydrolipoyl dehydrogenase activity	8.99E-04
44	GO:0017150: tRNA dihydrouridine synthase activity	8.99E-04
45	GO:0003723: RNA binding	9.73E-04
46	GO:0051536: iron-sulfur cluster binding	1.11E-03
47	GO:0035250: UDP-galactosyltransferase activity	1.28E-03
48	GO:0016149: translation release factor activity, codon specific	1.28E-03
49	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.28E-03
50	GO:0004550: nucleoside diphosphate kinase activity	1.28E-03
51	GO:0008097: 5S rRNA binding	1.28E-03
52	GO:0001872: (1->3)-beta-D-glucan binding	1.28E-03
53	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.28E-03
54	GO:0035529: NADH pyrophosphatase activity	1.28E-03
55	GO:0043495: protein anchor	1.71E-03
56	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.71E-03
57	GO:0004659: prenyltransferase activity	1.71E-03
58	GO:0016279: protein-lysine N-methyltransferase activity	1.71E-03
59	GO:0004845: uracil phosphoribosyltransferase activity	1.71E-03
60	GO:0005525: GTP binding	2.04E-03
61	GO:0003729: mRNA binding	2.14E-03
62	GO:0004040: amidase activity	2.19E-03
63	GO:0003989: acetyl-CoA carboxylase activity	2.19E-03
64	GO:0016208: AMP binding	2.70E-03
65	GO:0016462: pyrophosphatase activity	2.70E-03
66	GO:0004605: phosphatidate cytidylyltransferase activity	2.70E-03
67	GO:0004849: uridine kinase activity	3.24E-03
68	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.24E-03
69	GO:0019899: enzyme binding	3.82E-03
70	GO:0016831: carboxy-lyase activity	3.82E-03
71	GO:0004033: aldo-keto reductase (NADP) activity	4.44E-03
72	GO:0008312: 7S RNA binding	4.44E-03
73	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.08E-03
74	GO:0004222: metalloendopeptidase activity	5.56E-03
75	GO:0003747: translation release factor activity	5.75E-03
76	GO:0044183: protein binding involved in protein folding	7.96E-03
77	GO:0031072: heat shock protein binding	9.57E-03
78	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.62E-03
79	GO:0008266: poly(U) RNA binding	1.04E-02
80	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.11E-02
81	GO:0004176: ATP-dependent peptidase activity	1.50E-02
82	GO:0051082: unfolded protein binding	1.59E-02
83	GO:0022891: substrate-specific transmembrane transporter activity	1.71E-02
84	GO:0003727: single-stranded RNA binding	1.81E-02
85	GO:0004812: aminoacyl-tRNA ligase activity	1.92E-02
86	GO:0003924: GTPase activity	1.99E-02
87	GO:0003713: transcription coactivator activity	2.14E-02
88	GO:0008080: N-acetyltransferase activity	2.14E-02
89	GO:0004519: endonuclease activity	2.22E-02
90	GO:0010181: FMN binding	2.25E-02
91	GO:0000156: phosphorelay response regulator activity	2.72E-02
92	GO:0008237: metallopeptidase activity	2.97E-02
93	GO:0008483: transaminase activity	2.97E-02
94	GO:0016597: amino acid binding	3.10E-02
95	GO:0003743: translation initiation factor activity	3.21E-02
96	GO:0016168: chlorophyll binding	3.36E-02
97	GO:0042802: identical protein binding	3.49E-02
98	GO:0030247: polysaccharide binding	3.62E-02
99	GO:0008236: serine-type peptidase activity	3.76E-02
100	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.90E-02
101	GO:0008168: methyltransferase activity	4.09E-02
102	GO:0000287: magnesium ion binding	4.16E-02
103	GO:0004601: peroxidase activity	4.24E-02
104	GO:0003746: translation elongation factor activity	4.61E-02
105	GO:0003993: acid phosphatase activity	4.76E-02
106	GO:0016491: oxidoreductase activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0009507: chloroplast	9.13E-71
4	GO:0009570: chloroplast stroma	1.15E-39
5	GO:0009941: chloroplast envelope	1.76E-37
6	GO:0009535: chloroplast thylakoid membrane	1.21E-17
7	GO:0009579: thylakoid	2.66E-12
8	GO:0005840: ribosome	1.20E-11
9	GO:0009536: plastid	4.45E-09
10	GO:0009543: chloroplast thylakoid lumen	1.93E-08
11	GO:0009654: photosystem II oxygen evolving complex	2.82E-06
12	GO:0031977: thylakoid lumen	8.56E-06
13	GO:0031969: chloroplast membrane	1.09E-05
14	GO:0009534: chloroplast thylakoid	5.37E-05
15	GO:0042651: thylakoid membrane	8.68E-05
16	GO:0019898: extrinsic component of membrane	2.51E-04
17	GO:0009706: chloroplast inner membrane	4.26E-04
18	GO:0042170: plastid membrane	5.53E-04
19	GO:0080085: signal recognition particle, chloroplast targeting	5.53E-04
20	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.53E-04
21	GO:0009508: plastid chromosome	7.18E-04
22	GO:0033281: TAT protein transport complex	8.99E-04
23	GO:0009317: acetyl-CoA carboxylase complex	8.99E-04
24	GO:0010007: magnesium chelatase complex	8.99E-04
25	GO:0009526: plastid envelope	1.71E-03
26	GO:0055035: plastid thylakoid membrane	2.19E-03
27	GO:0009295: nucleoid	3.44E-03
28	GO:0009533: chloroplast stromal thylakoid	3.82E-03
29	GO:0009539: photosystem II reaction center	5.08E-03
30	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.08E-03
31	GO:0005763: mitochondrial small ribosomal subunit	5.75E-03
32	GO:0015934: large ribosomal subunit	5.83E-03
33	GO:0000311: plastid large ribosomal subunit	8.75E-03
34	GO:0032040: small-subunit processome	8.75E-03
35	GO:0030095: chloroplast photosystem II	1.04E-02
36	GO:0022626: cytosolic ribosome	1.06E-02
37	GO:0009532: plastid stroma	1.50E-02
38	GO:0015935: small ribosomal subunit	1.50E-02
39	GO:0043231: intracellular membrane-bounded organelle	2.25E-02
40	GO:0009523: photosystem II	2.36E-02
41	GO:0005778: peroxisomal membrane	2.97E-02
42	GO:0010319: stromule	2.97E-02
43	GO:0030529: intracellular ribonucleoprotein complex	3.23E-02
44	GO:0046658: anchored component of plasma membrane	3.64E-02
45	GO:0009707: chloroplast outer membrane	3.90E-02
46	GO:0009505: plant-type cell wall	4.50E-02