gene detail

Gene description

RAP-DB: OS07G0163500

Short description: Val-tRNA synthetase, Regulation of chloroplast ribosome biogenesis, Early chloroplast development

Orthologous

Arabidopsis:

AT5G16715

Maize: No orthologous

Wheat: No orthologous

GO biological process

tRNA aminoacylation for protein translation (GO:0006418), valyl-tRNA aminoacylation (GO:0006438)

GO cellular component

cytoplasm (GO:0005737)

GO molecular function

nucleotide binding (GO:0000166), aminoacyl-tRNA editing activity (GO:0002161), aminoacyl-tRNA ligase activity (GO:0004812), valine-tRNA ligase activity (GO:0004832), ATP binding (GO:0005524)

Protein domain

Pfam	PF10458, Valyl tRNA synthetase tRNA binding arm
Pfam	PF00133, tRNA synthetases class I (I, L, M and V)
Pfam	PF08264, Anticodon-binding domain of tRNA

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:dosa00970: Aminoacyl-tRNA biosynthesis

Coexpression network

GSE63047_T7174R  view
GSE33411_IRBB5  view
GSE16793_XOO  view
GSE16793_XOC  view
GSE62894_S_77  view
GSE33411_IRBB7  view
GSE62893_S_15B  view
GSE33411_IR24  view
GSE63047_DELTAHRCV  view

Differentially expressed condition

13 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 12 h	2.53	5.97E-09
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 3 h	2.18	1.45E-07
GSE33411	IRBB5, control	IRBB5, Xanthomonas oryzae pv. oryzae 12 h	1.81	2.89E-06
GSE33411	IRBB7, control	IRBB7, Xanthomonas oryzae pv. oryzae 12 h	2.87	4.25E-10
GSE33411	IRBB7, control	IRBB7, Xanthomonas oryzae pv. oryzae 3 h	1.91	1.42E-06
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain PXO99A_2	-1.56	2.00E-06
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain T7174	-2.04	1.58E-08
GSE62894	Nipponbare, pish, water 5 d	Nipponbare, pish, Magnaporthe oryzae Kyu77-07A 5 d	-4.80	1.35E-08
GSE62895	Nipponbare, Pia, water 2 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 2 d	-1.81	3.97E-02
GSE62895	Nipponbare, Pia, water 3 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 3 d	-3.05	4.45E-04
GSE62895	Nipponbare, Pia, water 5 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 5 d	-2.45	6.81E-03
GSE62895	Nipponbare, pia, water 3 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 3 d	-2.89	6.51E-04
GSE62895	Nipponbare, pia, water 5 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 5 d	-1.72	2.54E-02