co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G16715

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017038: protein import	0.00E+00
2	GO:0090042: tubulin deacetylation	0.00E+00
3	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
4	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
5	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
6	GO:0070125: mitochondrial translational elongation	0.00E+00
7	GO:0034337: RNA folding	0.00E+00
8	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
9	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
10	GO:2000505: regulation of energy homeostasis	0.00E+00
11	GO:0002184: cytoplasmic translational termination	0.00E+00
12	GO:0030155: regulation of cell adhesion	0.00E+00
13	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
14	GO:0061635: regulation of protein complex stability	0.00E+00
15	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
16	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
17	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
18	GO:0005996: monosaccharide metabolic process	0.00E+00
19	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
20	GO:0010027: thylakoid membrane organization	6.96E-12
21	GO:0032544: plastid translation	2.82E-10
22	GO:0015979: photosynthesis	2.32E-09
23	GO:0009658: chloroplast organization	1.61E-07
24	GO:0009773: photosynthetic electron transport in photosystem I	2.42E-07
25	GO:0015995: chlorophyll biosynthetic process	1.23E-06
26	GO:0018026: peptidyl-lysine monomethylation	2.14E-06
27	GO:0016117: carotenoid biosynthetic process	4.59E-06
28	GO:0010206: photosystem II repair	6.89E-06
29	GO:0006000: fructose metabolic process	7.85E-06
30	GO:0006546: glycine catabolic process	3.29E-05
31	GO:0010236: plastoquinone biosynthetic process	5.28E-05
32	GO:0006418: tRNA aminoacylation for protein translation	6.13E-05
33	GO:0009793: embryo development ending in seed dormancy	8.51E-05
34	GO:1901259: chloroplast rRNA processing	1.08E-04
35	GO:0006412: translation	1.08E-04
36	GO:0010196: nonphotochemical quenching	1.42E-04
37	GO:0000481: maturation of 5S rRNA	2.13E-04
38	GO:0042371: vitamin K biosynthetic process	2.13E-04
39	GO:0043609: regulation of carbon utilization	2.13E-04
40	GO:0043007: maintenance of rDNA	2.13E-04
41	GO:0006002: fructose 6-phosphate metabolic process	2.25E-04
42	GO:0009409: response to cold	2.88E-04
43	GO:0006432: phenylalanyl-tRNA aminoacylation	4.76E-04
44	GO:0090342: regulation of cell aging	4.76E-04
45	GO:0097054: L-glutamate biosynthetic process	4.76E-04
46	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.76E-04
47	GO:0055114: oxidation-reduction process	7.26E-04
48	GO:0090391: granum assembly	7.74E-04
49	GO:0071492: cellular response to UV-A	7.74E-04
50	GO:0016050: vesicle organization	7.74E-04
51	GO:0048281: inflorescence morphogenesis	7.74E-04
52	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.10E-03
53	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.10E-03
54	GO:0006020: inositol metabolic process	1.10E-03
55	GO:0051085: chaperone mediated protein folding requiring cofactor	1.10E-03
56	GO:0006537: glutamate biosynthetic process	1.10E-03
57	GO:0010148: transpiration	1.10E-03
58	GO:0051205: protein insertion into membrane	1.47E-03
59	GO:0006021: inositol biosynthetic process	1.47E-03
60	GO:0010021: amylopectin biosynthetic process	1.47E-03
61	GO:0006808: regulation of nitrogen utilization	1.47E-03
62	GO:0010109: regulation of photosynthesis	1.47E-03
63	GO:0019676: ammonia assimilation cycle	1.47E-03
64	GO:0071486: cellular response to high light intensity	1.47E-03
65	GO:0019464: glycine decarboxylation via glycine cleavage system	1.47E-03
66	GO:0006109: regulation of carbohydrate metabolic process	1.47E-03
67	GO:0045727: positive regulation of translation	1.47E-03
68	GO:0015994: chlorophyll metabolic process	1.47E-03
69	GO:0016120: carotene biosynthetic process	1.87E-03
70	GO:0032543: mitochondrial translation	1.87E-03
71	GO:0045038: protein import into chloroplast thylakoid membrane	1.87E-03
72	GO:0016123: xanthophyll biosynthetic process	1.87E-03
73	GO:0042793: transcription from plastid promoter	2.31E-03
74	GO:0010190: cytochrome b6f complex assembly	2.31E-03
75	GO:0046855: inositol phosphate dephosphorylation	2.31E-03
76	GO:0042549: photosystem II stabilization	2.31E-03
77	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.31E-03
78	GO:0009955: adaxial/abaxial pattern specification	2.77E-03
79	GO:0042026: protein refolding	2.77E-03
80	GO:0042372: phylloquinone biosynthetic process	2.77E-03
81	GO:0009790: embryo development	3.19E-03
82	GO:0070370: cellular heat acclimation	3.26E-03
83	GO:0010103: stomatal complex morphogenesis	3.26E-03
84	GO:0009772: photosynthetic electron transport in photosystem II	3.26E-03
85	GO:0006605: protein targeting	3.78E-03
86	GO:0032508: DNA duplex unwinding	3.78E-03
87	GO:0000105: histidine biosynthetic process	3.78E-03
88	GO:0005978: glycogen biosynthetic process	3.78E-03
89	GO:0009642: response to light intensity	3.78E-03
90	GO:0018298: protein-chromophore linkage	4.00E-03
91	GO:0017004: cytochrome complex assembly	4.33E-03
92	GO:0001558: regulation of cell growth	4.33E-03
93	GO:0006499: N-terminal protein myristoylation	4.41E-03
94	GO:0005982: starch metabolic process	5.50E-03
95	GO:0010205: photoinhibition	5.50E-03
96	GO:0006779: porphyrin-containing compound biosynthetic process	5.50E-03
97	GO:0006782: protoporphyrinogen IX biosynthetic process	6.12E-03
98	GO:0009089: lysine biosynthetic process via diaminopimelate	6.77E-03
99	GO:0006415: translational termination	6.77E-03
100	GO:0009073: aromatic amino acid family biosynthetic process	6.77E-03
101	GO:0043085: positive regulation of catalytic activity	6.77E-03
102	GO:0000272: polysaccharide catabolic process	6.77E-03
103	GO:0018119: peptidyl-cysteine S-nitrosylation	6.77E-03
104	GO:0019684: photosynthesis, light reaction	6.77E-03
105	GO:0009735: response to cytokinin	6.98E-03
106	GO:0042254: ribosome biogenesis	7.04E-03
107	GO:0045037: protein import into chloroplast stroma	7.44E-03
108	GO:0006790: sulfur compound metabolic process	7.44E-03
109	GO:0005983: starch catabolic process	7.44E-03
110	GO:0006094: gluconeogenesis	8.13E-03
111	GO:0005986: sucrose biosynthetic process	8.13E-03
112	GO:0006364: rRNA processing	8.80E-03
113	GO:0010207: photosystem II assembly	8.84E-03
114	GO:0019253: reductive pentose-phosphate cycle	8.84E-03
115	GO:0046854: phosphatidylinositol phosphorylation	9.58E-03
116	GO:0005985: sucrose metabolic process	9.58E-03
117	GO:0006636: unsaturated fatty acid biosynthetic process	1.03E-02
118	GO:0000162: tryptophan biosynthetic process	1.03E-02
119	GO:0009944: polarity specification of adaxial/abaxial axis	1.11E-02
120	GO:0045454: cell redox homeostasis	1.14E-02
121	GO:0009768: photosynthesis, light harvesting in photosystem I	1.19E-02
122	GO:0051302: regulation of cell division	1.19E-02
123	GO:0016575: histone deacetylation	1.19E-02
124	GO:0061077: chaperone-mediated protein folding	1.27E-02
125	GO:0007005: mitochondrion organization	1.36E-02
126	GO:0001944: vasculature development	1.45E-02
127	GO:0009561: megagametogenesis	1.53E-02
128	GO:0042631: cellular response to water deprivation	1.72E-02
129	GO:0006662: glycerol ether metabolic process	1.81E-02
130	GO:0009646: response to absence of light	1.91E-02
131	GO:0019252: starch biosynthetic process	2.00E-02
132	GO:0010090: trichome morphogenesis	2.31E-02
133	GO:0030163: protein catabolic process	2.31E-02
134	GO:0042742: defense response to bacterium	2.31E-02
135	GO:0009627: systemic acquired resistance	2.95E-02
136	GO:0009416: response to light stimulus	3.05E-02
137	GO:0008219: cell death	3.30E-02
138	GO:0009817: defense response to fungus, incompatible interaction	3.30E-02
139	GO:0048481: plant ovule development	3.30E-02
140	GO:0010218: response to far red light	3.54E-02
141	GO:0009637: response to blue light	3.91E-02
142	GO:0009853: photorespiration	3.91E-02
143	GO:0034599: cellular response to oxidative stress	4.03E-02
144	GO:0006810: transport	4.04E-02
145	GO:0010114: response to red light	4.68E-02
146	GO:0009744: response to sucrose	4.68E-02
147	GO:0009644: response to high light intensity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
4	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
5	GO:0043014: alpha-tubulin binding	0.00E+00
6	GO:0004823: leucine-tRNA ligase activity	0.00E+00
7	GO:0046408: chlorophyll synthetase activity	0.00E+00
8	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
9	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
10	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
11	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
12	GO:0051721: protein phosphatase 2A binding	0.00E+00
13	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
14	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
15	GO:0042903: tubulin deacetylase activity	0.00E+00
16	GO:0016166: phytoene dehydrogenase activity	0.00E+00
17	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
18	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
19	GO:0019843: rRNA binding	8.82E-12
20	GO:0005528: FK506 binding	1.35E-06
21	GO:0002161: aminoacyl-tRNA editing activity	7.85E-06
22	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.73E-06
23	GO:0016851: magnesium chelatase activity	1.79E-05
24	GO:0016279: protein-lysine N-methyltransferase activity	3.29E-05
25	GO:0003735: structural constituent of ribosome	4.95E-05
26	GO:0016491: oxidoreductase activity	5.85E-05
27	GO:2001070: starch binding	7.77E-05
28	GO:0004812: aminoacyl-tRNA ligase activity	1.19E-04
29	GO:0045485: omega-6 fatty acid desaturase activity	2.13E-04
30	GO:0019203: carbohydrate phosphatase activity	2.13E-04
31	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.13E-04
32	GO:0016041: glutamate synthase (ferredoxin) activity	2.13E-04
33	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.13E-04
34	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.13E-04
35	GO:0050308: sugar-phosphatase activity	2.13E-04
36	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.76E-04
37	GO:0010291: carotene beta-ring hydroxylase activity	4.76E-04
38	GO:0047746: chlorophyllase activity	4.76E-04
39	GO:0010297: heteropolysaccharide binding	4.76E-04
40	GO:0004047: aminomethyltransferase activity	4.76E-04
41	GO:0052832: inositol monophosphate 3-phosphatase activity	4.76E-04
42	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.76E-04
43	GO:0008934: inositol monophosphate 1-phosphatase activity	4.76E-04
44	GO:0052833: inositol monophosphate 4-phosphatase activity	4.76E-04
45	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.76E-04
46	GO:0004826: phenylalanine-tRNA ligase activity	4.76E-04
47	GO:0000049: tRNA binding	5.07E-04
48	GO:0031072: heat shock protein binding	5.75E-04
49	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	7.74E-04
50	GO:0015462: ATPase-coupled protein transmembrane transporter activity	7.74E-04
51	GO:0043169: cation binding	7.74E-04
52	GO:0017150: tRNA dihydrouridine synthase activity	7.74E-04
53	GO:0003913: DNA photolyase activity	7.74E-04
54	GO:0048487: beta-tubulin binding	1.10E-03
55	GO:0016149: translation release factor activity, codon specific	1.10E-03
56	GO:0043023: ribosomal large subunit binding	1.10E-03
57	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.10E-03
58	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.10E-03
59	GO:0042277: peptide binding	1.47E-03
60	GO:0004659: prenyltransferase activity	1.47E-03
61	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.47E-03
62	GO:0019199: transmembrane receptor protein kinase activity	1.47E-03
63	GO:0004040: amidase activity	1.87E-03
64	GO:0051538: 3 iron, 4 sulfur cluster binding	1.87E-03
65	GO:0051082: unfolded protein binding	1.97E-03
66	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.71E-03
67	GO:0008483: transaminase activity	2.74E-03
68	GO:0004017: adenylate kinase activity	2.77E-03
69	GO:0051920: peroxiredoxin activity	2.77E-03
70	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.77E-03
71	GO:0016787: hydrolase activity	2.83E-03
72	GO:0016168: chlorophyll binding	3.25E-03
73	GO:0009881: photoreceptor activity	3.26E-03
74	GO:0004033: aldo-keto reductase (NADP) activity	3.78E-03
75	GO:0016209: antioxidant activity	3.78E-03
76	GO:0008236: serine-type peptidase activity	3.81E-03
77	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.33E-03
78	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.90E-03
79	GO:0003747: translation release factor activity	4.90E-03
80	GO:0003746: translation elongation factor activity	5.07E-03
81	GO:0008047: enzyme activator activity	6.12E-03
82	GO:0044183: protein binding involved in protein folding	6.77E-03
83	GO:0004161: dimethylallyltranstransferase activity	6.77E-03
84	GO:0008266: poly(U) RNA binding	8.84E-03
85	GO:0031409: pigment binding	1.03E-02
86	GO:0004857: enzyme inhibitor activity	1.11E-02
87	GO:0004407: histone deacetylase activity	1.11E-02
88	GO:0022891: substrate-specific transmembrane transporter activity	1.45E-02
89	GO:0003756: protein disulfide isomerase activity	1.53E-02
90	GO:0047134: protein-disulfide reductase activity	1.62E-02
91	GO:0004252: serine-type endopeptidase activity	1.75E-02
92	GO:0003723: RNA binding	1.87E-02
93	GO:0050662: coenzyme binding	1.91E-02
94	GO:0004791: thioredoxin-disulfide reductase activity	1.91E-02
95	GO:0048038: quinone binding	2.10E-02
96	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.31E-02
97	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.30E-02
98	GO:0000287: magnesium ion binding	3.31E-02
99	GO:0015238: drug transmembrane transporter activity	3.42E-02
100	GO:0003729: mRNA binding	4.12E-02
101	GO:0043621: protein self-association	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009507: chloroplast	2.67E-78
3	GO:0009570: chloroplast stroma	1.23E-43
4	GO:0009534: chloroplast thylakoid	1.72E-31
5	GO:0009941: chloroplast envelope	1.78E-30
6	GO:0009535: chloroplast thylakoid membrane	1.06E-27
7	GO:0009543: chloroplast thylakoid lumen	6.52E-15
8	GO:0009579: thylakoid	2.70E-14
9	GO:0031977: thylakoid lumen	1.34E-10
10	GO:0005840: ribosome	4.54E-08
11	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.14E-06
12	GO:0031969: chloroplast membrane	5.17E-06
13	GO:0010007: magnesium chelatase complex	7.85E-06
14	GO:0010319: stromule	1.74E-05
15	GO:0009508: plastid chromosome	2.52E-05
16	GO:0009706: chloroplast inner membrane	2.93E-05
17	GO:0030095: chloroplast photosystem II	3.08E-05
18	GO:0009654: photosystem II oxygen evolving complex	6.13E-05
19	GO:0019898: extrinsic component of membrane	1.83E-04
20	GO:0009515: granal stacked thylakoid	2.13E-04
21	GO:0009547: plastid ribosome	2.13E-04
22	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.13E-04
23	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.74E-04
24	GO:0009295: nucleoid	2.85E-04
25	GO:0032040: small-subunit processome	5.07E-04
26	GO:0009509: chromoplast	7.74E-04
27	GO:0042651: thylakoid membrane	9.78E-04
28	GO:0005960: glycine cleavage complex	1.10E-03
29	GO:0010287: plastoglobule	2.45E-03
30	GO:0009533: chloroplast stromal thylakoid	3.26E-03
31	GO:0005759: mitochondrial matrix	3.50E-03
32	GO:0009501: amyloplast	3.78E-03
33	GO:0015934: large ribosomal subunit	4.62E-03
34	GO:0005763: mitochondrial small ribosomal subunit	4.90E-03
35	GO:0000311: plastid large ribosomal subunit	7.44E-03
36	GO:0022626: cytosolic ribosome	7.47E-03
37	GO:0048046: apoplast	8.87E-03
38	GO:0030076: light-harvesting complex	9.58E-03
39	GO:0009536: plastid	9.75E-03
40	GO:0016020: membrane	1.17E-02
41	GO:0015935: small ribosomal subunit	1.27E-02
42	GO:0005623: cell	1.62E-02
43	GO:0009522: photosystem I	1.91E-02
44	GO:0009523: photosystem II	2.00E-02