gene detail

Gene description

TAIR ID: AT4G25630

Short description: fibrillarin 2

Pathogen responsiveness: -0.83

General responsiveness: 0.85

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

histone glutamine methylation, rRNA processing, tRNA processing, RNA methylation, box C/D snoRNA 3'-end processing, regulation of transcription, DNA-templated, transcription, rRNA methylation

GO cellular component

nucleolus, box C/D snoRNP complex, Cajal body, nucleus, mediator complex, small-subunit processome

GO molecular function

rRNA methyltransferase activity, RNA binding, histone-glutamine methyltransferase activity

Protein domain

Pfam	PF01269, Fibrillarin
SMART	SM01206, Fibrillarin

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03008: Ribosome biogenesis in eukaryotes

Transcriptional regulation

Regulator:
AT5G13790, AT1G24260, AT5G61850, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 7

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE13739	Col, eds, control 7 d	Col, eds, G.orontii 7 d	1.56	7.59E-07
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.88	2.56E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-3.31	6.45E-07
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	1.53	2.31E-09
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.77	6.09E-07
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	1.53	5.23E-05
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	2.03	1.94E-02