Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G25630

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0044843: cell cycle G1/S phase transition0.00E+00
2GO:1904874: positive regulation of telomerase RNA localization to Cajal body0.00E+00
3GO:0043461: proton-transporting ATP synthase complex assembly0.00E+00
4GO:0006412: translation4.28E-25
5GO:0000027: ribosomal large subunit assembly1.36E-09
6GO:0042254: ribosome biogenesis2.84E-09
7GO:0006364: rRNA processing1.85E-05
8GO:0006407: rRNA export from nucleus2.19E-05
9GO:0031120: snRNA pseudouridine synthesis2.19E-05
10GO:0031118: rRNA pseudouridine synthesis2.19E-05
11GO:0006430: lysyl-tRNA aminoacylation2.19E-05
12GO:0000494: box C/D snoRNA 3'-end processing2.19E-05
13GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2.19E-05
14GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2.19E-05
15GO:1990258: histone glutamine methylation2.19E-05
16GO:0009735: response to cytokinin5.42E-05
17GO:1902626: assembly of large subunit precursor of preribosome9.94E-05
18GO:0042256: mature ribosome assembly9.94E-05
19GO:0032502: developmental process1.15E-04
20GO:0007004: telomere maintenance via telomerase1.49E-04
21GO:0071493: cellular response to UV-B2.62E-04
22GO:0031167: rRNA methylation2.62E-04
23GO:0009423: chorismate biosynthetic process3.89E-04
24GO:0001522: pseudouridine synthesis5.25E-04
25GO:0000028: ribosomal small subunit assembly5.25E-04
26GO:0001558: regulation of cell growth5.98E-04
27GO:0001510: RNA methylation5.98E-04
28GO:0016573: histone acetylation7.48E-04
29GO:0009073: aromatic amino acid family biosynthetic process9.07E-04
30GO:0006626: protein targeting to mitochondrion1.07E-03
31GO:0048467: gynoecium development1.16E-03
32GO:0009651: response to salt stress1.42E-03
33GO:0051302: regulation of cell division1.53E-03
34GO:0007005: mitochondrion organization1.73E-03
35GO:0008033: tRNA processing2.15E-03
36GO:0000413: protein peptidyl-prolyl isomerization2.15E-03
37GO:0010197: polar nucleus fusion2.26E-03
38GO:0009734: auxin-activated signaling pathway4.25E-03
39GO:0010043: response to zinc ion4.42E-03
40GO:0006839: mitochondrial transport5.15E-03
41GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process6.39E-03
42GO:0010224: response to UV-B7.05E-03
43GO:0009409: response to cold1.47E-02
44GO:0046686: response to cadmium ion1.69E-02
45GO:0006970: response to osmotic stress1.86E-02
46GO:0009793: embryo development ending in seed dormancy2.51E-02
47GO:0006357: regulation of transcription from RNA polymerase II promoter3.31E-02
48GO:0006457: protein folding4.89E-02
RankGO TermAdjusted P value
1GO:0016018: cyclosporin A binding0.00E+00
2GO:0034513: box H/ACA snoRNA binding0.00E+00
3GO:0004107: chorismate synthase activity0.00E+00
4GO:0003735: structural constituent of ribosome3.32E-25
5GO:0003729: mRNA binding1.88E-10
6GO:0003723: RNA binding1.68E-08
7GO:0030515: snoRNA binding3.78E-06
8GO:1990259: histone-glutamine methyltransferase activity2.19E-05
9GO:0004824: lysine-tRNA ligase activity2.19E-05
10GO:0070034: telomerase RNA binding5.64E-05
11GO:0008649: rRNA methyltransferase activity9.94E-05
12GO:0008235: metalloexopeptidase activity4.56E-04
13GO:0015114: phosphate ion transmembrane transporter activity1.07E-03
14GO:0010181: FMN binding2.38E-03
15GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.00E-03
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.23E-03
17GO:0019843: rRNA binding1.03E-02
RankGO TermAdjusted P value
1GO:0090661: box H/ACA telomerase RNP complex0.00E+00
2GO:0072589: box H/ACA scaRNP complex0.00E+00
3GO:0005730: nucleolus7.95E-26
4GO:0022626: cytosolic ribosome3.10E-22
5GO:0022625: cytosolic large ribosomal subunit1.77E-18
6GO:0022627: cytosolic small ribosomal subunit2.57E-13
7GO:0005840: ribosome9.26E-13
8GO:0005829: cytosol2.31E-10
9GO:0009506: plasmodesma1.41E-08
10GO:0016020: membrane1.77E-07
11GO:0015934: large ribosomal subunit6.26E-06
12GO:0015030: Cajal body1.05E-05
13GO:0030686: 90S preribosome2.19E-05
14GO:0015935: small ribosomal subunit4.74E-05
15GO:0035267: NuA4 histone acetyltransferase complex5.64E-05
16GO:0005737: cytoplasm1.27E-04
17GO:0031429: box H/ACA snoRNP complex1.49E-04
18GO:0005774: vacuolar membrane2.69E-04
19GO:0031428: box C/D snoRNP complex3.24E-04
20GO:0005773: vacuole5.85E-04
21GO:0032040: small-subunit processome9.89E-04
22GO:0005622: intracellular1.37E-03
23GO:0005758: mitochondrial intermembrane space1.43E-03
24GO:0005618: cell wall1.83E-03
25GO:0005743: mitochondrial inner membrane2.82E-03
26GO:0030529: intracellular ribonucleoprotein complex3.34E-03
27GO:0009507: chloroplast1.52E-02
28GO:0005886: plasma membrane2.16E-02
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Gene type



Gene DE type