co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080056: petal vascular tissue pattern formation	0.00E+00
2	GO:0071731: response to nitric oxide	0.00E+00
3	GO:0031564: transcription antitermination	0.00E+00
4	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
5	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
6	GO:0072321: chaperone-mediated protein transport	0.00E+00
7	GO:0006626: protein targeting to mitochondrion	7.78E-10
8	GO:0007005: mitochondrion organization	4.71E-09
9	GO:0042254: ribosome biogenesis	6.20E-09
10	GO:0006364: rRNA processing	5.50E-07
11	GO:0046686: response to cadmium ion	7.39E-06
12	GO:0006412: translation	2.19E-05
13	GO:0000494: box C/D snoRNA 3'-end processing	2.64E-05
14	GO:1990258: histone glutamine methylation	2.64E-05
15	GO:0000027: ribosomal large subunit assembly	4.95E-05
16	GO:0045041: protein import into mitochondrial intermembrane space	6.72E-05
17	GO:0045039: protein import into mitochondrial inner membrane	1.18E-04
18	GO:1902626: assembly of large subunit precursor of preribosome	1.18E-04
19	GO:0070301: cellular response to hydrogen peroxide	1.76E-04
20	GO:0051085: chaperone mediated protein folding requiring cofactor	1.76E-04
21	GO:0006241: CTP biosynthetic process	1.76E-04
22	GO:0006165: nucleoside diphosphate phosphorylation	1.76E-04
23	GO:0006228: UTP biosynthetic process	1.76E-04
24	GO:0051131: chaperone-mediated protein complex assembly	1.76E-04
25	GO:0006986: response to unfolded protein	1.76E-04
26	GO:0006183: GTP biosynthetic process	2.39E-04
27	GO:0042273: ribosomal large subunit biogenesis	2.39E-04
28	GO:0000460: maturation of 5.8S rRNA	2.39E-04
29	GO:0031167: rRNA methylation	3.07E-04
30	GO:0000470: maturation of LSU-rRNA	3.78E-04
31	GO:0009651: response to salt stress	3.98E-04
32	GO:0042026: protein refolding	4.53E-04
33	GO:0006458: 'de novo' protein folding	4.53E-04
34	GO:0042255: ribosome assembly	6.10E-04
35	GO:0001510: RNA methylation	6.94E-04
36	GO:0010162: seed dormancy process	9.59E-04
37	GO:0006820: anion transport	1.15E-03
38	GO:0009793: embryo development ending in seed dormancy	1.17E-03
39	GO:0006457: protein folding	1.24E-03
40	GO:0010588: cotyledon vascular tissue pattern formation	1.25E-03
41	GO:0048467: gynoecium development	1.35E-03
42	GO:0030150: protein import into mitochondrial matrix	1.67E-03
43	GO:0009944: polarity specification of adaxial/abaxial axis	1.67E-03
44	GO:0061077: chaperone-mediated protein folding	1.90E-03
45	GO:0009294: DNA mediated transformation	2.14E-03
46	GO:0008033: tRNA processing	2.52E-03
47	GO:0010501: RNA secondary structure unwinding	2.52E-03
48	GO:0000413: protein peptidyl-prolyl isomerization	2.52E-03
49	GO:0010305: leaf vascular tissue pattern formation	2.65E-03
50	GO:0006635: fatty acid beta-oxidation	3.05E-03
51	GO:0009408: response to heat	3.81E-03
52	GO:0016049: cell growth	4.53E-03
53	GO:0006811: ion transport	5.02E-03
54	GO:0009631: cold acclimation	5.18E-03
55	GO:0048527: lateral root development	5.18E-03
56	GO:0010043: response to zinc ion	5.18E-03
57	GO:0009735: response to cytokinin	6.16E-03
58	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	7.50E-03
59	GO:0048367: shoot system development	9.29E-03
60	GO:0016569: covalent chromatin modification	9.92E-03
61	GO:0006414: translational elongation	1.01E-02
62	GO:0009845: seed germination	1.28E-02
63	GO:0006413: translational initiation	1.45E-02
64	GO:0015031: protein transport	1.74E-02
65	GO:0009409: response to cold	1.86E-02
66	GO:0006970: response to osmotic stress	2.19E-02
67	GO:0009723: response to ethylene	2.30E-02
68	GO:0048366: leaf development	2.33E-02
69	GO:0048364: root development	3.29E-02
70	GO:0009734: auxin-activated signaling pathway	4.07E-02

Rank	GO Term	Adjusted P value
1	GO:0001072: transcription antitermination factor activity, RNA binding	0.00E+00
2	GO:0016018: cyclosporin A binding	0.00E+00
3	GO:0003723: RNA binding	5.78E-08
4	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	9.04E-08
5	GO:0003735: structural constituent of ribosome	9.73E-07
6	GO:0005507: copper ion binding	1.45E-05
7	GO:1990259: histone-glutamine methyltransferase activity	2.64E-05
8	GO:0042134: rRNA primary transcript binding	2.64E-05
9	GO:0051082: unfolded protein binding	4.73E-05
10	GO:0008649: rRNA methyltransferase activity	1.18E-04
11	GO:0004550: nucleoside diphosphate kinase activity	1.76E-04
12	GO:0003746: translation elongation factor activity	3.42E-04
13	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	3.78E-04
14	GO:0003924: GTPase activity	4.42E-04
15	GO:0030515: snoRNA binding	5.30E-04
16	GO:0003729: mRNA binding	6.04E-04
17	GO:0015288: porin activity	6.10E-04
18	GO:0008308: voltage-gated anion channel activity	6.94E-04
19	GO:0044183: protein binding involved in protein folding	1.05E-03
20	GO:0015266: protein channel activity	1.25E-03
21	GO:0004407: histone deacetylase activity	1.67E-03
22	GO:0051087: chaperone binding	1.78E-03
23	GO:0004004: ATP-dependent RNA helicase activity	4.37E-03
24	GO:0050897: cobalt ion binding	5.18E-03
25	GO:0003697: single-stranded DNA binding	5.52E-03
26	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.31E-03
27	GO:0003690: double-stranded DNA binding	8.28E-03
28	GO:0046872: metal ion binding	8.40E-03
29	GO:0008026: ATP-dependent helicase activity	1.08E-02
30	GO:0005515: protein binding	1.10E-02
31	GO:0003676: nucleic acid binding	1.30E-02
32	GO:0008565: protein transporter activity	1.38E-02
33	GO:0005524: ATP binding	1.55E-02
34	GO:0003743: translation initiation factor activity	1.70E-02

Rank	GO Term	Adjusted P value
1	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
2	GO:0005730: nucleolus	7.27E-16
3	GO:0005758: mitochondrial intermembrane space	4.61E-07
4	GO:0005840: ribosome	2.34E-06
5	GO:0005759: mitochondrial matrix	3.28E-06
6	GO:0030687: preribosome, large subunit precursor	5.12E-06
7	GO:0022627: cytosolic small ribosomal subunit	7.30E-06
8	GO:0005743: mitochondrial inner membrane	2.96E-05
9	GO:0005739: mitochondrion	1.36E-04
10	GO:0022625: cytosolic large ribosomal subunit	2.85E-04
11	GO:0031428: box C/D snoRNP complex	3.78E-04
12	GO:0005774: vacuolar membrane	4.21E-04
13	GO:0034399: nuclear periphery	6.10E-04
14	GO:0005742: mitochondrial outer membrane translocase complex	6.94E-04
15	GO:0046930: pore complex	6.94E-04
16	GO:0022626: cytosolic ribosome	8.55E-04
17	GO:0015030: Cajal body	8.68E-04
18	GO:0032040: small-subunit processome	1.15E-03
19	GO:0005741: mitochondrial outer membrane	1.90E-03
20	GO:0005829: cytosol	2.44E-03
21	GO:0009506: plasmodesma	4.41E-03
22	GO:0005747: mitochondrial respiratory chain complex I	9.29E-03
23	GO:0016020: membrane	1.74E-02
24	GO:0005773: vacuole	1.80E-02
25	GO:0048046: apoplast	4.96E-02