co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071731: response to nitric oxide	0.00E+00
2	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
3	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
4	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
5	GO:0072321: chaperone-mediated protein transport	0.00E+00
6	GO:0044843: cell cycle G1/S phase transition	0.00E+00
7	GO:0006412: translation	3.01E-91
8	GO:0042254: ribosome biogenesis	1.79E-29
9	GO:0006364: rRNA processing	2.06E-13
10	GO:0006626: protein targeting to mitochondrion	2.52E-08
11	GO:0000027: ribosomal large subunit assembly	9.68E-08
12	GO:0042274: ribosomal small subunit biogenesis	4.81E-07
13	GO:0048569: post-embryonic animal organ development	4.48E-06
14	GO:0045039: protein import into mitochondrial inner membrane	1.59E-05
15	GO:0010162: seed dormancy process	3.10E-05
16	GO:0030150: protein import into mitochondrial matrix	1.21E-04
17	GO:0000470: maturation of LSU-rRNA	1.45E-04
18	GO:0007005: mitochondrion organization	1.84E-04
19	GO:0006458: 'de novo' protein folding	1.97E-04
20	GO:0009955: adaxial/abaxial pattern specification	1.97E-04
21	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.14E-04
22	GO:0019877: diaminopimelate biosynthetic process	3.14E-04
23	GO:0043985: histone H4-R3 methylation	3.14E-04
24	GO:1990258: histone glutamine methylation	3.14E-04
25	GO:1901430: positive regulation of syringal lignin biosynthetic process	3.14E-04
26	GO:0006169: adenosine salvage	3.14E-04
27	GO:0006407: rRNA export from nucleus	3.14E-04
28	GO:0031120: snRNA pseudouridine synthesis	3.14E-04
29	GO:0000469: cleavage involved in rRNA processing	3.14E-04
30	GO:0031118: rRNA pseudouridine synthesis	3.14E-04
31	GO:0035266: meristem growth	3.14E-04
32	GO:0030490: maturation of SSU-rRNA	3.14E-04
33	GO:0000494: box C/D snoRNA 3'-end processing	3.14E-04
34	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.14E-04
35	GO:0009735: response to cytokinin	3.16E-04
36	GO:0000028: ribosomal small subunit assembly	3.24E-04
37	GO:0009553: embryo sac development	6.76E-04
38	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.87E-04
39	GO:0015786: UDP-glucose transport	6.87E-04
40	GO:2000072: regulation of defense response to fungus, incompatible interaction	6.87E-04
41	GO:0045041: protein import into mitochondrial intermembrane space	6.87E-04
42	GO:0009967: positive regulation of signal transduction	6.87E-04
43	GO:0006913: nucleocytoplasmic transport	7.62E-04
44	GO:0002181: cytoplasmic translation	1.11E-03
45	GO:0015783: GDP-fucose transport	1.11E-03
46	GO:0042256: mature ribosome assembly	1.11E-03
47	GO:0006413: translational initiation	1.45E-03
48	GO:0009944: polarity specification of adaxial/abaxial axis	1.52E-03
49	GO:0006164: purine nucleotide biosynthetic process	1.60E-03
50	GO:0009855: determination of bilateral symmetry	1.60E-03
51	GO:0051131: chaperone-mediated protein complex assembly	1.60E-03
52	GO:0032981: mitochondrial respiratory chain complex I assembly	1.60E-03
53	GO:0033617: mitochondrial respiratory chain complex IV assembly	1.60E-03
54	GO:0072334: UDP-galactose transmembrane transport	1.60E-03
55	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	1.60E-03
56	GO:0061077: chaperone-mediated protein folding	1.84E-03
57	GO:0042273: ribosomal large subunit biogenesis	2.14E-03
58	GO:0051205: protein insertion into membrane	2.14E-03
59	GO:0000460: maturation of 5.8S rRNA	2.14E-03
60	GO:0051781: positive regulation of cell division	2.14E-03
61	GO:0009294: DNA mediated transformation	2.20E-03
62	GO:0040007: growth	2.20E-03
63	GO:0031167: rRNA methylation	2.74E-03
64	GO:0006461: protein complex assembly	2.74E-03
65	GO:0044209: AMP salvage	2.74E-03
66	GO:0008033: tRNA processing	2.80E-03
67	GO:0010197: polar nucleus fusion	3.01E-03
68	GO:0000741: karyogamy	3.38E-03
69	GO:0016554: cytidine to uridine editing	3.38E-03
70	GO:0042026: protein refolding	4.06E-03
71	GO:0009648: photoperiodism	4.06E-03
72	GO:1900057: positive regulation of leaf senescence	4.80E-03
73	GO:0080186: developmental vegetative growth	4.80E-03
74	GO:0042744: hydrogen peroxide catabolic process	6.33E-03
75	GO:0001510: RNA methylation	6.39E-03
76	GO:0001558: regulation of cell growth	6.39E-03
77	GO:0022900: electron transport chain	6.39E-03
78	GO:0048507: meristem development	7.24E-03
79	GO:0006189: 'de novo' IMP biosynthetic process	7.24E-03
80	GO:0007338: single fertilization	7.24E-03
81	GO:0009051: pentose-phosphate shunt, oxidative branch	7.24E-03
82	GO:0010449: root meristem growth	8.14E-03
83	GO:0030422: production of siRNA involved in RNA interference	9.07E-03
84	GO:0006259: DNA metabolic process	9.07E-03
85	GO:0009682: induced systemic resistance	1.00E-02
86	GO:0009089: lysine biosynthetic process via diaminopimelate	1.00E-02
87	GO:0010015: root morphogenesis	1.00E-02
88	GO:0006820: anion transport	1.11E-02
89	GO:0009793: embryo development ending in seed dormancy	1.14E-02
90	GO:2000012: regulation of auxin polar transport	1.21E-02
91	GO:0006006: glucose metabolic process	1.21E-02
92	GO:0090351: seedling development	1.43E-02
93	GO:0010030: positive regulation of seed germination	1.43E-02
94	GO:0010073: meristem maintenance	1.78E-02
95	GO:0051302: regulation of cell division	1.78E-02
96	GO:0048511: rhythmic process	1.91E-02
97	GO:0016569: covalent chromatin modification	2.09E-02
98	GO:0071215: cellular response to abscisic acid stimulus	2.16E-02
99	GO:0009561: megagametogenesis	2.29E-02
100	GO:0010089: xylem development	2.29E-02
101	GO:0010501: RNA secondary structure unwinding	2.57E-02
102	GO:0000413: protein peptidyl-prolyl isomerization	2.57E-02
103	GO:0010305: leaf vascular tissue pattern formation	2.71E-02
104	GO:0009960: endosperm development	2.71E-02
105	GO:0015031: protein transport	2.73E-02
106	GO:0000302: response to reactive oxygen species	3.15E-02
107	GO:0080156: mitochondrial mRNA modification	3.15E-02
108	GO:0016032: viral process	3.30E-02
109	GO:0032502: developmental process	3.30E-02
110	GO:0006414: translational elongation	3.38E-02
111	GO:0009567: double fertilization forming a zygote and endosperm	3.61E-02
112	GO:0010029: regulation of seed germination	4.25E-02
113	GO:0016049: cell growth	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
2	GO:0016018: cyclosporin A binding	0.00E+00
3	GO:0003735: structural constituent of ribosome	8.73E-111
4	GO:0003729: mRNA binding	4.13E-19
5	GO:0019843: rRNA binding	6.01E-15
6	GO:0003723: RNA binding	3.83E-08
7	GO:0030515: snoRNA binding	5.87E-06
8	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	6.86E-06
9	GO:0044183: protein binding involved in protein folding	3.94E-05
10	GO:0004407: histone deacetylase activity	1.21E-04
11	GO:0004001: adenosine kinase activity	3.14E-04
12	GO:0048037: cofactor binding	3.14E-04
13	GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H	3.14E-04
14	GO:1990259: histone-glutamine methyltransferase activity	3.14E-04
15	GO:0042134: rRNA primary transcript binding	3.14E-04
16	GO:0008840: 4-hydroxy-tetrahydrodipicolinate synthase	3.14E-04
17	GO:0000166: nucleotide binding	3.90E-04
18	GO:0001055: RNA polymerase II activity	5.66E-04
19	GO:0004775: succinate-CoA ligase (ADP-forming) activity	6.87E-04
20	GO:0005078: MAP-kinase scaffold activity	6.87E-04
21	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	6.87E-04
22	GO:0004776: succinate-CoA ligase (GDP-forming) activity	6.87E-04
23	GO:0043021: ribonucleoprotein complex binding	6.87E-04
24	GO:0001054: RNA polymerase I activity	7.62E-04
25	GO:0001056: RNA polymerase III activity	8.70E-04
26	GO:0008649: rRNA methyltransferase activity	1.11E-03
27	GO:0005457: GDP-fucose transmembrane transporter activity	1.11E-03
28	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.11E-03
29	GO:0003746: translation elongation factor activity	1.28E-03
30	GO:0005460: UDP-glucose transmembrane transporter activity	1.60E-03
31	GO:0008097: 5S rRNA binding	1.60E-03
32	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.14E-03
33	GO:0005459: UDP-galactose transmembrane transporter activity	2.74E-03
34	GO:0051082: unfolded protein binding	4.03E-03
35	GO:0008026: ATP-dependent helicase activity	4.34E-03
36	GO:0008235: metalloexopeptidase activity	4.80E-03
37	GO:0015288: porin activity	5.57E-03
38	GO:0004004: ATP-dependent RNA helicase activity	6.33E-03
39	GO:0008135: translation factor activity, RNA binding	6.39E-03
40	GO:0008308: voltage-gated anion channel activity	6.39E-03
41	GO:0003678: DNA helicase activity	7.24E-03
42	GO:0050897: cobalt ion binding	8.12E-03
43	GO:0003743: translation initiation factor activity	9.86E-03
44	GO:0005507: copper ion binding	9.94E-03
45	GO:0000049: tRNA binding	1.11E-02
46	GO:0015266: protein channel activity	1.21E-02
47	GO:0009982: pseudouridine synthase activity	1.21E-02
48	GO:0004601: peroxidase activity	1.41E-02
49	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.55E-02
50	GO:0051087: chaperone binding	1.78E-02
51	GO:0008514: organic anion transmembrane transporter activity	2.29E-02
52	GO:0010181: FMN binding	2.85E-02

Rank	GO Term	Adjusted P value
1	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
2	GO:0005832: chaperonin-containing T-complex	0.00E+00
3	GO:0034457: Mpp10 complex	0.00E+00
4	GO:0005840: ribosome	1.51E-69
5	GO:0022625: cytosolic large ribosomal subunit	1.31E-64
6	GO:0022626: cytosolic ribosome	5.05E-61
7	GO:0022627: cytosolic small ribosomal subunit	1.00E-52
8	GO:0005730: nucleolus	5.62E-42
9	GO:0005829: cytosol	1.22E-20
10	GO:0009506: plasmodesma	1.42E-20
11	GO:0005737: cytoplasm	1.30E-13
12	GO:0015934: large ribosomal subunit	1.08E-11
13	GO:0032040: small-subunit processome	1.70E-08
14	GO:0005773: vacuole	5.53E-08
15	GO:0015935: small ribosomal subunit	1.71E-07
16	GO:0005774: vacuolar membrane	5.30E-07
17	GO:0016020: membrane	1.29E-06
18	GO:0005618: cell wall	6.31E-06
19	GO:0005758: mitochondrial intermembrane space	1.21E-04
20	GO:0031428: box C/D snoRNP complex	1.45E-04
21	GO:0030686: 90S preribosome	3.14E-04
22	GO:0005742: mitochondrial outer membrane translocase complex	3.98E-04
23	GO:0005743: mitochondrial inner membrane	4.05E-04
24	GO:0005736: DNA-directed RNA polymerase I complex	4.78E-04
25	GO:0005666: DNA-directed RNA polymerase III complex	5.66E-04
26	GO:0015030: Cajal body	5.66E-04
27	GO:0005834: heterotrimeric G-protein complex	5.87E-04
28	GO:0000418: DNA-directed RNA polymerase IV complex	6.60E-04
29	GO:0070545: PeBoW complex	6.87E-04
30	GO:0005665: DNA-directed RNA polymerase II, core complex	8.70E-04
31	GO:0019013: viral nucleocapsid	9.84E-04
32	GO:0009507: chloroplast	9.86E-04
33	GO:0031429: box H/ACA snoRNP complex	1.60E-03
34	GO:0005741: mitochondrial outer membrane	1.84E-03
35	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.39E-03
36	GO:0005747: mitochondrial respiratory chain complex I	3.31E-03
37	GO:0016363: nuclear matrix	4.06E-03
38	GO:0016272: prefoldin complex	4.06E-03
39	GO:0005622: intracellular	4.60E-03
40	GO:0030687: preribosome, large subunit precursor	4.80E-03
41	GO:0046930: pore complex	6.39E-03
42	GO:0005759: mitochondrial matrix	7.18E-03
43	GO:0005852: eukaryotic translation initiation factor 3 complex	1.00E-02
44	GO:0000419: DNA-directed RNA polymerase V complex	1.54E-02
45	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.59E-02
46	GO:0005732: small nucleolar ribonucleoprotein complex	2.42E-02
47	GO:0030529: intracellular ribonucleoprotein complex	4.09E-02
48	GO:0009707: chloroplast outer membrane	4.93E-02