gene detail

Gene description

TAIR ID: AT3G23880

Short description: F-box and associated interaction domains-containing protein

Pathogen responsiveness: 0.41

General responsiveness: 0.74

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat:

TAAFFX.65400.1.S1_AT TAAFFX.30127.1.S1_AT

GO biological process

biological_process

GO cellular component

nucleus

GO molecular function

molecular_function

Protein domain

Pfam	PF08268, F-box associated domain
Pfam	PF00646, F-box domain
SMART	SM00256, FBOX

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G53660, AT5G13790, AT3G14230

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 4

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

35 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, mpk6 ko, water 4 h	Col, mpk6 ko, Flg22 4 h	-1.50	2.39E-02
GSE12856	Col, WT, control	Col, WT, Bg h	-2.21	1.18E-07
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-2.60	1.91E-08
GSE17464	Laer, control	Laer, Flg22 1 h	-1.58	9.61E-03
GSE17464	Laer, control	Laer, Flg22 2 h	-1.52	1.07E-02
GSE17464	Penta, control	Penta, Flg22 2 h	-2.44	6.72E-05
GSE17464	Penta, control	Penta, Flg22 2 h	-2.33	1.38E-04
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.61	2.33E-04
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.68	1.43E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.98	1.52E-10
GSE20278	Col, RPL18-HF, control, polysomal RNA	Col, RPL18-HF, TuMV 10 d, polysomal RNA	-1.58	3.28E-02
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-2.13	1.63E-05
GSE21920	Col, ulp1, mock	Col, ulp1, Pto 6 h	-1.75	7.93E-04
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.78	1.01E-02
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-2.01	8.17E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-2.60	1.09E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-2.43	2.09E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	-2.11	1.21E-02
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.75	3.67E-12
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.80	3.68E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.61	1.57E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.44	4.64E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.75	7.13E-15
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-2.54	1.16E-12
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.47	2.37E-12
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-3.92	1.26E-15
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	-2.52	1.80E-12
GSE4746	Col, WT, water 30 min	Col, WT, chitooctaose 30 min	-1.82	4.33E-03
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	-2.04	3.55E-02
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.71	1.14E-03
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	-1.80	1.64E-03
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.63	2.53E-04
GSE5685	Col, WT, control 16 h	Col, WT, Ps ES4326 AvrRpt2 16 h	-1.51	5.69E-03
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.82	6.52E-03
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-2.59	1.08E-04