Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G23880

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
2GO:0035884: arabinan biosynthetic process0.00E+00
3GO:0090627: plant epidermal cell differentiation0.00E+00
4GO:0009606: tropism0.00E+00
5GO:0090322: regulation of superoxide metabolic process0.00E+00
6GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
7GO:0080127: fruit septum development0.00E+00
8GO:0033206: meiotic cytokinesis0.00E+00
9GO:0019988: charged-tRNA amino acid modification0.00E+00
10GO:0090615: mitochondrial mRNA processing0.00E+00
11GO:0042794: rRNA transcription from plastid promoter0.00E+00
12GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
13GO:0045014: negative regulation of transcription by glucose0.00E+00
14GO:0042793: transcription from plastid promoter1.42E-07
15GO:0010569: regulation of double-strand break repair via homologous recombination1.75E-05
16GO:0006353: DNA-templated transcription, termination4.99E-05
17GO:0009734: auxin-activated signaling pathway5.35E-05
18GO:0006518: peptide metabolic process5.75E-05
19GO:0009416: response to light stimulus1.22E-04
20GO:0009733: response to auxin1.73E-04
21GO:2000038: regulation of stomatal complex development2.05E-04
22GO:1900864: mitochondrial RNA modification2.05E-04
23GO:0009658: chloroplast organization2.99E-04
24GO:0009913: epidermal cell differentiation4.33E-04
25GO:2000377: regulation of reactive oxygen species metabolic process5.10E-04
26GO:2000033: regulation of seed dormancy process5.75E-04
27GO:0080112: seed growth6.37E-04
28GO:1905039: carboxylic acid transmembrane transport6.37E-04
29GO:1905200: gibberellic acid transmembrane transport6.37E-04
30GO:1903866: palisade mesophyll development6.37E-04
31GO:0010063: positive regulation of trichoblast fate specification6.37E-04
32GO:0034757: negative regulation of iron ion transport6.37E-04
33GO:0006401: RNA catabolic process7.35E-04
34GO:0009938: negative regulation of gibberellic acid mediated signaling pathway9.13E-04
35GO:0042255: ribosome assembly9.13E-04
36GO:0046620: regulation of organ growth9.13E-04
37GO:0042127: regulation of cell proliferation9.15E-04
38GO:0007389: pattern specification process1.11E-03
39GO:0008033: tRNA processing1.12E-03
40GO:0010305: leaf vascular tissue pattern formation1.23E-03
41GO:0009926: auxin polar transport1.31E-03
42GO:0048731: system development1.37E-03
43GO:0010271: regulation of chlorophyll catabolic process1.37E-03
44GO:2000071: regulation of defense response by callose deposition1.37E-03
45GO:0009662: etioplast organization1.37E-03
46GO:1900033: negative regulation of trichome patterning1.37E-03
47GO:0080009: mRNA methylation1.37E-03
48GO:2000123: positive regulation of stomatal complex development1.37E-03
49GO:1901529: positive regulation of anion channel activity1.37E-03
50GO:1900865: chloroplast RNA modification1.57E-03
51GO:0048829: root cap development1.84E-03
52GO:0040008: regulation of growth1.89E-03
53GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.95E-03
54GO:0006364: rRNA processing2.07E-03
55GO:0009451: RNA modification2.13E-03
56GO:0080117: secondary growth2.26E-03
57GO:0090391: granum assembly2.26E-03
58GO:0030029: actin filament-based process2.26E-03
59GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement2.26E-03
60GO:0010029: regulation of seed germination2.78E-03
61GO:0010588: cotyledon vascular tissue pattern formation2.78E-03
62GO:0009800: cinnamic acid biosynthetic process3.28E-03
63GO:1901332: negative regulation of lateral root development3.28E-03
64GO:0006168: adenine salvage3.28E-03
65GO:1902290: positive regulation of defense response to oomycetes3.28E-03
66GO:0010371: regulation of gibberellin biosynthetic process3.28E-03
67GO:1902476: chloride transmembrane transport3.28E-03
68GO:0006166: purine ribonucleoside salvage3.28E-03
69GO:0010071: root meristem specification3.28E-03
70GO:0010239: chloroplast mRNA processing3.28E-03
71GO:0007276: gamete generation3.28E-03
72GO:0043481: anthocyanin accumulation in tissues in response to UV light3.28E-03
73GO:0006351: transcription, DNA-templated3.45E-03
74GO:0080188: RNA-directed DNA methylation3.52E-03
75GO:0009863: salicylic acid mediated signaling pathway4.36E-03
76GO:0080147: root hair cell development4.36E-03
77GO:0010187: negative regulation of seed germination4.36E-03
78GO:0006221: pyrimidine nucleotide biosynthetic process4.43E-03
79GO:0006808: regulation of nitrogen utilization4.43E-03
80GO:0006479: protein methylation4.43E-03
81GO:0048629: trichome patterning4.43E-03
82GO:0009867: jasmonic acid mediated signaling pathway4.93E-03
83GO:0003333: amino acid transmembrane transport5.30E-03
84GO:0080110: sporopollenin biosynthetic process5.69E-03
85GO:0016131: brassinosteroid metabolic process5.69E-03
86GO:0016120: carotene biosynthetic process5.69E-03
87GO:0048497: maintenance of floral organ identity5.69E-03
88GO:0016123: xanthophyll biosynthetic process5.69E-03
89GO:0044209: AMP salvage5.69E-03
90GO:0032876: negative regulation of DNA endoreduplication5.69E-03
91GO:0030308: negative regulation of cell growth5.69E-03
92GO:0010375: stomatal complex patterning5.69E-03
93GO:2000022: regulation of jasmonic acid mediated signaling pathway5.81E-03
94GO:0030001: metal ion transport5.83E-03
95GO:0009831: plant-type cell wall modification involved in multidimensional cell growth6.35E-03
96GO:0006284: base-excision repair6.91E-03
97GO:0016554: cytidine to uridine editing7.06E-03
98GO:0042176: regulation of protein catabolic process7.06E-03
99GO:0010315: auxin efflux7.06E-03
100GO:1902456: regulation of stomatal opening7.06E-03
101GO:0048831: regulation of shoot system development7.06E-03
102GO:0006559: L-phenylalanine catabolic process7.06E-03
103GO:0003006: developmental process involved in reproduction7.06E-03
104GO:0035435: phosphate ion transmembrane transport7.06E-03
105GO:0009643: photosynthetic acclimation7.06E-03
106GO:0010304: PSII associated light-harvesting complex II catabolic process7.06E-03
107GO:0009959: negative gravitropism7.06E-03
108GO:0010087: phloem or xylem histogenesis8.11E-03
109GO:0010118: stomatal movement8.11E-03
110GO:0000911: cytokinesis by cell plate formation8.54E-03
111GO:0048509: regulation of meristem development8.54E-03
112GO:2000037: regulation of stomatal complex patterning8.54E-03
113GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity8.54E-03
114GO:0010310: regulation of hydrogen peroxide metabolic process8.54E-03
115GO:0009955: adaxial/abaxial pattern specification8.54E-03
116GO:0031347: regulation of defense response8.73E-03
117GO:0048437: floral organ development1.01E-02
118GO:0006821: chloride transport1.01E-02
119GO:0048825: cotyledon development1.01E-02
120GO:0010103: stomatal complex morphogenesis1.01E-02
121GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.01E-02
122GO:0010374: stomatal complex development1.01E-02
123GO:0006955: immune response1.01E-02
124GO:0080156: mitochondrial mRNA modification1.08E-02
125GO:0009787: regulation of abscisic acid-activated signaling pathway1.18E-02
126GO:0006402: mRNA catabolic process1.18E-02
127GO:0009642: response to light intensity1.18E-02
128GO:0048766: root hair initiation1.18E-02
129GO:0010492: maintenance of shoot apical meristem identity1.18E-02
130GO:0052543: callose deposition in cell wall1.18E-02
131GO:0010090: trichome morphogenesis1.24E-02
132GO:0006281: DNA repair1.28E-02
133GO:0006355: regulation of transcription, DNA-templated1.29E-02
134GO:0048367: shoot system development1.29E-02
135GO:0010252: auxin homeostasis1.32E-02
136GO:0009828: plant-type cell wall loosening1.32E-02
137GO:0019430: removal of superoxide radicals1.36E-02
138GO:0007186: G-protein coupled receptor signaling pathway1.36E-02
139GO:0010233: phloem transport1.36E-02
140GO:0010052: guard cell differentiation1.36E-02
141GO:0032544: plastid translation1.36E-02
142GO:0009880: embryonic pattern specification1.36E-02
143GO:0009827: plant-type cell wall modification1.36E-02
144GO:0009740: gibberellic acid mediated signaling pathway1.46E-02
145GO:0048507: meristem development1.54E-02
146GO:0048589: developmental growth1.54E-02
147GO:0000902: cell morphogenesis1.54E-02
148GO:0009245: lipid A biosynthetic process1.54E-02
149GO:0042761: very long-chain fatty acid biosynthetic process1.74E-02
150GO:0006349: regulation of gene expression by genetic imprinting1.74E-02
151GO:0016571: histone methylation1.74E-02
152GO:0031425: chloroplast RNA processing1.74E-02
153GO:0016573: histone acetylation1.74E-02
154GO:1900426: positive regulation of defense response to bacterium1.74E-02
155GO:0006535: cysteine biosynthetic process from serine1.94E-02
156GO:0006949: syncytium formation1.94E-02
157GO:0031627: telomeric loop formation1.94E-02
158GO:0010048: vernalization response1.94E-02
159GO:0048481: plant ovule development2.06E-02
160GO:0009682: induced systemic resistance2.15E-02
161GO:0015770: sucrose transport2.15E-02
162GO:1903507: negative regulation of nucleic acid-templated transcription2.15E-02
163GO:0009750: response to fructose2.15E-02
164GO:0048765: root hair cell differentiation2.15E-02
165GO:0046856: phosphatidylinositol dephosphorylation2.15E-02
166GO:0048767: root hair elongation2.17E-02
167GO:0009793: embryo development ending in seed dormancy2.26E-02
168GO:0010218: response to far red light2.28E-02
169GO:0009845: seed germination2.31E-02
170GO:0010152: pollen maturation2.37E-02
171GO:0010582: floral meristem determinacy2.37E-02
172GO:0010105: negative regulation of ethylene-activated signaling pathway2.37E-02
173GO:0008361: regulation of cell size2.37E-02
174GO:0012501: programmed cell death2.37E-02
175GO:0006865: amino acid transport2.50E-02
176GO:0010102: lateral root morphogenesis2.60E-02
177GO:0009691: cytokinin biosynthetic process2.60E-02
178GO:0010020: chloroplast fission2.83E-02
179GO:0006270: DNA replication initiation2.83E-02
180GO:0009887: animal organ morphogenesis2.83E-02
181GO:0010540: basipetal auxin transport2.83E-02
182GO:0009266: response to temperature stimulus2.83E-02
183GO:0048467: gynoecium development2.83E-02
184GO:0045892: negative regulation of transcription, DNA-templated2.95E-02
185GO:0009901: anther dehiscence3.07E-02
186GO:0006636: unsaturated fatty acid biosynthetic process3.32E-02
187GO:0006071: glycerol metabolic process3.32E-02
188GO:0008283: cell proliferation3.37E-02
189GO:0007275: multicellular organism development3.41E-02
190GO:0006338: chromatin remodeling3.57E-02
191GO:0019344: cysteine biosynthetic process3.57E-02
192GO:0009739: response to gibberellin3.60E-02
193GO:0032259: methylation3.67E-02
194GO:0016042: lipid catabolic process3.75E-02
195GO:0006874: cellular calcium ion homeostasis3.83E-02
196GO:0010073: meristem maintenance3.83E-02
197GO:0006825: copper ion transport3.83E-02
198GO:0008380: RNA splicing3.90E-02
199GO:0016998: cell wall macromolecule catabolic process4.10E-02
200GO:0010431: seed maturation4.10E-02
201GO:0048364: root development4.15E-02
202GO:0009664: plant-type cell wall organization4.23E-02
203GO:0042538: hyperosmotic salinity response4.23E-02
204GO:0030245: cellulose catabolic process4.37E-02
205GO:0071215: cellular response to abscisic acid stimulus4.65E-02
206GO:0010082: regulation of root meristem growth4.65E-02
207GO:0048443: stamen development4.93E-02
208GO:0010584: pollen exine formation4.93E-02
RankGO TermAdjusted P value
1GO:0071633: dihydroceramidase activity0.00E+00
2GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity0.00E+00
3GO:0016763: transferase activity, transferring pentosyl groups0.00E+00
4GO:0008859: exoribonuclease II activity0.00E+00
5GO:0003723: RNA binding2.65E-04
6GO:0008725: DNA-3-methyladenine glycosylase activity3.10E-04
7GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.37E-04
8GO:0016274: protein-arginine N-methyltransferase activity6.37E-04
9GO:0052381: tRNA dimethylallyltransferase activity6.37E-04
10GO:0008395: steroid hydroxylase activity6.37E-04
11GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor6.37E-04
12GO:0004654: polyribonucleotide nucleotidyltransferase activity6.37E-04
13GO:0004016: adenylate cyclase activity6.37E-04
14GO:1905201: gibberellin transmembrane transporter activity6.37E-04
15GO:0042834: peptidoglycan binding6.37E-04
16GO:0003697: single-stranded DNA binding8.91E-04
17GO:0003727: single-stranded RNA binding9.15E-04
18GO:0000989: transcription factor activity, transcription factor binding1.33E-03
19GO:0008805: carbon-monoxide oxygenase activity1.37E-03
20GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.37E-03
21GO:0009884: cytokinin receptor activity1.37E-03
22GO:0042389: omega-3 fatty acid desaturase activity1.37E-03
23GO:0004809: tRNA (guanine-N2-)-methyltransferase activity1.37E-03
24GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.37E-03
25GO:0004519: endonuclease activity1.42E-03
26GO:0009672: auxin:proton symporter activity1.57E-03
27GO:0017150: tRNA dihydrouridine synthase activity2.26E-03
28GO:0045548: phenylalanine ammonia-lyase activity2.26E-03
29GO:0070181: small ribosomal subunit rRNA binding2.26E-03
30GO:0016805: dipeptidase activity2.26E-03
31GO:0005034: osmosensor activity2.26E-03
32GO:0000175: 3'-5'-exoribonuclease activity2.78E-03
33GO:0003725: double-stranded RNA binding2.78E-03
34GO:0010329: auxin efflux transmembrane transporter activity2.78E-03
35GO:0003700: transcription factor activity, sequence-specific DNA binding2.99E-03
36GO:0009041: uridylate kinase activity3.28E-03
37GO:0003999: adenine phosphoribosyltransferase activity3.28E-03
38GO:0001872: (1->3)-beta-D-glucan binding3.28E-03
39GO:0004222: metalloendopeptidase activity4.13E-03
40GO:0008168: methyltransferase activity4.15E-03
41GO:0010328: auxin influx transmembrane transporter activity4.43E-03
42GO:0005253: anion channel activity4.43E-03
43GO:0004930: G-protein coupled receptor activity4.43E-03
44GO:0010011: auxin binding4.43E-03
45GO:0043565: sequence-specific DNA binding4.79E-03
46GO:0019843: rRNA binding5.03E-03
47GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding6.13E-03
48GO:0030570: pectate lyase activity6.35E-03
49GO:0031177: phosphopantetheine binding7.06E-03
50GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity7.06E-03
51GO:0004784: superoxide dismutase activity7.06E-03
52GO:0009378: four-way junction helicase activity7.06E-03
53GO:0005247: voltage-gated chloride channel activity7.06E-03
54GO:0003688: DNA replication origin binding7.06E-03
55GO:0043140: ATP-dependent 3'-5' DNA helicase activity7.06E-03
56GO:0016832: aldehyde-lyase activity8.54E-03
57GO:0000035: acyl binding8.54E-03
58GO:0019900: kinase binding8.54E-03
59GO:0004124: cysteine synthase activity8.54E-03
60GO:0001085: RNA polymerase II transcription factor binding8.75E-03
61GO:0004871: signal transducer activity9.63E-03
62GO:0019901: protein kinase binding1.01E-02
63GO:0003690: double-stranded DNA binding1.05E-02
64GO:0003677: DNA binding1.11E-02
65GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.18E-02
66GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.36E-02
67GO:0008237: metallopeptidase activity1.40E-02
68GO:0005200: structural constituent of cytoskeleton1.40E-02
69GO:0008889: glycerophosphodiester phosphodiesterase activity1.54E-02
70GO:0016788: hydrolase activity, acting on ester bonds1.64E-02
71GO:0004673: protein histidine kinase activity1.94E-02
72GO:0003691: double-stranded telomeric DNA binding2.15E-02
73GO:0008515: sucrose transmembrane transporter activity2.15E-02
74GO:0008289: lipid binding2.25E-02
75GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity2.37E-02
76GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.39E-02
77GO:0052689: carboxylic ester hydrolase activity2.56E-02
78GO:0004022: alcohol dehydrogenase (NAD) activity2.60E-02
79GO:0031072: heat shock protein binding2.60E-02
80GO:0000155: phosphorelay sensor kinase activity2.60E-02
81GO:0009982: pseudouridine synthase activity2.60E-02
82GO:0015114: phosphate ion transmembrane transporter activity2.60E-02
83GO:0051119: sugar transmembrane transporter activity3.07E-02
84GO:0005217: intracellular ligand-gated ion channel activity3.07E-02
85GO:0004970: ionotropic glutamate receptor activity3.07E-02
86GO:0004190: aspartic-type endopeptidase activity3.07E-02
87GO:0004674: protein serine/threonine kinase activity3.54E-02
88GO:0003714: transcription corepressor activity3.57E-02
89GO:0043621: protein self-association3.65E-02
90GO:0015293: symporter activity3.79E-02
91GO:0043424: protein histidine kinase binding3.83E-02
92GO:0004540: ribonuclease activity4.10E-02
93GO:0004176: ATP-dependent peptidase activity4.10E-02
94GO:0008810: cellulase activity4.65E-02
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Gene type



Gene DE type