co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G23880

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:2000469: negative regulation of peroxidase activity	0.00E+00
3	GO:0090706: specification of plant organ position	0.00E+00
4	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
5	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
6	GO:0080127: fruit septum development	0.00E+00
7	GO:0009733: response to auxin	3.06E-07
8	GO:0040008: regulation of growth	3.67E-06
9	GO:0046620: regulation of organ growth	3.00E-05
10	GO:0009734: auxin-activated signaling pathway	8.26E-05
11	GO:0010158: abaxial cell fate specification	2.22E-04
12	GO:0030488: tRNA methylation	4.19E-04
13	GO:0051247: positive regulation of protein metabolic process	5.15E-04
14	GO:0015904: tetracycline transport	5.15E-04
15	GO:2000905: negative regulation of starch metabolic process	5.15E-04
16	GO:0010450: inflorescence meristem growth	5.15E-04
17	GO:0034757: negative regulation of iron ion transport	5.15E-04
18	GO:0000025: maltose catabolic process	5.15E-04
19	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	5.15E-04
20	GO:0006285: base-excision repair, AP site formation	5.15E-04
21	GO:0051382: kinetochore assembly	5.15E-04
22	GO:0009090: homoserine biosynthetic process	5.15E-04
23	GO:0010480: microsporocyte differentiation	5.15E-04
24	GO:0006955: immune response	5.37E-04
25	GO:0009657: plastid organization	8.15E-04
26	GO:0000373: Group II intron splicing	9.74E-04
27	GO:0009786: regulation of asymmetric cell division	1.11E-03
28	GO:0031648: protein destabilization	1.11E-03
29	GO:0006568: tryptophan metabolic process	1.11E-03
30	GO:0031297: replication fork processing	1.11E-03
31	GO:1900871: chloroplast mRNA modification	1.11E-03
32	GO:0010271: regulation of chlorophyll catabolic process	1.11E-03
33	GO:1900033: negative regulation of trichome patterning	1.11E-03
34	GO:1900865: chloroplast RNA modification	1.15E-03
35	GO:0032502: developmental process	1.16E-03
36	GO:0009641: shade avoidance	1.34E-03
37	GO:0010582: floral meristem determinacy	1.77E-03
38	GO:0071398: cellular response to fatty acid	1.81E-03
39	GO:0045165: cell fate commitment	1.81E-03
40	GO:0090506: axillary shoot meristem initiation	1.81E-03
41	GO:0033591: response to L-ascorbic acid	1.81E-03
42	GO:0080117: secondary growth	1.81E-03
43	GO:0048586: regulation of long-day photoperiodism, flowering	1.81E-03
44	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	1.81E-03
45	GO:0009725: response to hormone	2.01E-03
46	GO:0006006: glucose metabolic process	2.01E-03
47	GO:0009067: aspartate family amino acid biosynthetic process	2.63E-03
48	GO:0010371: regulation of gibberellin biosynthetic process	2.63E-03
49	GO:0051513: regulation of monopolar cell growth	2.63E-03
50	GO:0051639: actin filament network formation	2.63E-03
51	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.63E-03
52	GO:0010306: rhamnogalacturonan II biosynthetic process	2.63E-03
53	GO:1990019: protein storage vacuole organization	2.63E-03
54	GO:0009755: hormone-mediated signaling pathway	3.54E-03
55	GO:0048629: trichome patterning	3.54E-03
56	GO:0051764: actin crosslink formation	3.54E-03
57	GO:0042274: ribosomal small subunit biogenesis	3.54E-03
58	GO:0009765: photosynthesis, light harvesting	3.54E-03
59	GO:2000306: positive regulation of photomorphogenesis	3.54E-03
60	GO:0016998: cell wall macromolecule catabolic process	3.83E-03
61	GO:0010431: seed maturation	3.83E-03
62	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.88E-03
63	GO:0009926: auxin polar transport	4.51E-03
64	GO:0048497: maintenance of floral organ identity	4.54E-03
65	GO:0009107: lipoate biosynthetic process	4.54E-03
66	GO:1902183: regulation of shoot apical meristem development	4.54E-03
67	GO:0016123: xanthophyll biosynthetic process	4.54E-03
68	GO:0010438: cellular response to sulfur starvation	4.54E-03
69	GO:0080110: sporopollenin biosynthetic process	4.54E-03
70	GO:0016131: brassinosteroid metabolic process	4.54E-03
71	GO:0016120: carotene biosynthetic process	4.54E-03
72	GO:0045487: gibberellin catabolic process	4.54E-03
73	GO:0071215: cellular response to abscisic acid stimulus	4.58E-03
74	GO:0006284: base-excision repair	4.99E-03
75	GO:0045892: negative regulation of transcription, DNA-templated	5.15E-03
76	GO:0009636: response to toxic substance	5.23E-03
77	GO:0010405: arabinogalactan protein metabolic process	5.63E-03
78	GO:0010358: leaf shaping	5.63E-03
79	GO:0016554: cytidine to uridine editing	5.63E-03
80	GO:0009913: epidermal cell differentiation	5.63E-03
81	GO:1902456: regulation of stomatal opening	5.63E-03
82	GO:0048831: regulation of shoot system development	5.63E-03
83	GO:0010190: cytochrome b6f complex assembly	5.63E-03
84	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.63E-03
85	GO:0003006: developmental process involved in reproduction	5.63E-03
86	GO:0010087: phloem or xylem histogenesis	5.85E-03
87	GO:0009741: response to brassinosteroid	6.31E-03
88	GO:0010268: brassinosteroid homeostasis	6.31E-03
89	GO:0009088: threonine biosynthetic process	6.79E-03
90	GO:0009648: photoperiodism	6.79E-03
91	GO:0071333: cellular response to glucose stimulus	6.79E-03
92	GO:0009082: branched-chain amino acid biosynthetic process	6.79E-03
93	GO:0031930: mitochondria-nucleus signaling pathway	6.79E-03
94	GO:0048509: regulation of meristem development	6.79E-03
95	GO:0009099: valine biosynthetic process	6.79E-03
96	GO:0006351: transcription, DNA-templated	7.43E-03
97	GO:0009909: regulation of flower development	7.52E-03
98	GO:0000302: response to reactive oxygen species	7.80E-03
99	GO:0000712: resolution of meiotic recombination intermediates	8.04E-03
100	GO:0010050: vegetative phase change	8.04E-03
101	GO:0048437: floral organ development	8.04E-03
102	GO:0010098: suspensor development	8.04E-03
103	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	8.04E-03
104	GO:0030307: positive regulation of cell growth	8.04E-03
105	GO:0010583: response to cyclopentenone	8.34E-03
106	GO:2000070: regulation of response to water deprivation	9.36E-03
107	GO:0000105: histidine biosynthetic process	9.36E-03
108	GO:0009819: drought recovery	9.36E-03
109	GO:0006402: mRNA catabolic process	9.36E-03
110	GO:0010439: regulation of glucosinolate biosynthetic process	9.36E-03
111	GO:0009850: auxin metabolic process	9.36E-03
112	GO:0009690: cytokinin metabolic process	9.36E-03
113	GO:0009704: de-etiolation	9.36E-03
114	GO:0006464: cellular protein modification process	9.47E-03
115	GO:0010093: specification of floral organ identity	1.08E-02
116	GO:0007129: synapsis	1.08E-02
117	GO:0009097: isoleucine biosynthetic process	1.08E-02
118	GO:0009742: brassinosteroid mediated signaling pathway	1.12E-02
119	GO:0010029: regulation of seed germination	1.20E-02
120	GO:0009051: pentose-phosphate shunt, oxidative branch	1.22E-02
121	GO:0006098: pentose-phosphate shunt	1.22E-02
122	GO:0051865: protein autoubiquitination	1.22E-02
123	GO:0048507: meristem development	1.22E-02
124	GO:2000024: regulation of leaf development	1.22E-02
125	GO:0009638: phototropism	1.38E-02
126	GO:0009098: leucine biosynthetic process	1.38E-02
127	GO:0010018: far-red light signaling pathway	1.38E-02
128	GO:0009086: methionine biosynthetic process	1.38E-02
129	GO:0048829: root cap development	1.54E-02
130	GO:0010629: negative regulation of gene expression	1.54E-02
131	GO:0009299: mRNA transcription	1.54E-02
132	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.54E-02
133	GO:0000160: phosphorelay signal transduction system	1.56E-02
134	GO:0048229: gametophyte development	1.70E-02
135	GO:0009682: induced systemic resistance	1.70E-02
136	GO:0009089: lysine biosynthetic process via diaminopimelate	1.70E-02
137	GO:0006415: translational termination	1.70E-02
138	GO:0048527: lateral root development	1.72E-02
139	GO:0009867: jasmonic acid mediated signaling pathway	1.88E-02
140	GO:0005983: starch catabolic process	1.88E-02
141	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.88E-02
142	GO:0009416: response to light stimulus	1.95E-02
143	GO:2000028: regulation of photoperiodism, flowering	2.05E-02
144	GO:0006355: regulation of transcription, DNA-templated	2.05E-02
145	GO:0010075: regulation of meristem growth	2.05E-02
146	GO:0006094: gluconeogenesis	2.05E-02
147	GO:0009767: photosynthetic electron transport chain	2.05E-02
148	GO:0010588: cotyledon vascular tissue pattern formation	2.05E-02
149	GO:0010102: lateral root morphogenesis	2.05E-02
150	GO:0010628: positive regulation of gene expression	2.05E-02
151	GO:0010223: secondary shoot formation	2.24E-02
152	GO:0009934: regulation of meristem structural organization	2.24E-02
153	GO:0048467: gynoecium development	2.24E-02
154	GO:0006631: fatty acid metabolic process	2.24E-02
155	GO:0010020: chloroplast fission	2.24E-02
156	GO:0010207: photosystem II assembly	2.24E-02
157	GO:0009933: meristem structural organization	2.24E-02
158	GO:0007166: cell surface receptor signaling pathway	2.46E-02
159	GO:0042546: cell wall biogenesis	2.53E-02
160	GO:0019762: glucosinolate catabolic process	2.62E-02
161	GO:0000162: tryptophan biosynthetic process	2.62E-02
162	GO:0042753: positive regulation of circadian rhythm	2.62E-02
163	GO:0009753: response to jasmonic acid	2.69E-02
164	GO:0005992: trehalose biosynthetic process	2.83E-02
165	GO:0009944: polarity specification of adaxial/abaxial axis	2.83E-02
166	GO:0080147: root hair cell development	2.83E-02
167	GO:0051017: actin filament bundle assembly	2.83E-02
168	GO:0048511: rhythmic process	3.24E-02
169	GO:0016114: terpenoid biosynthetic process	3.24E-02
170	GO:0009585: red, far-red light phototransduction	3.28E-02
171	GO:0009736: cytokinin-activated signaling pathway	3.28E-02
172	GO:0009826: unidimensional cell growth	3.43E-02
173	GO:0010017: red or far-red light signaling pathway	3.46E-02
174	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.46E-02
175	GO:0001944: vasculature development	3.68E-02
176	GO:0009625: response to insect	3.68E-02
177	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.68E-02
178	GO:0009693: ethylene biosynthetic process	3.68E-02
179	GO:0009686: gibberellin biosynthetic process	3.68E-02
180	GO:0010082: regulation of root meristem growth	3.68E-02
181	GO:0010584: pollen exine formation	3.90E-02
182	GO:0048316: seed development	4.00E-02
183	GO:0016117: carotenoid biosynthetic process	4.13E-02
184	GO:0070417: cellular response to cold	4.13E-02
185	GO:0010118: stomatal movement	4.37E-02
186	GO:0048653: anther development	4.37E-02
187	GO:0080022: primary root development	4.37E-02
188	GO:0009740: gibberellic acid mediated signaling pathway	4.38E-02
189	GO:0048366: leaf development	4.39E-02
190	GO:0010182: sugar mediated signaling pathway	4.61E-02
191	GO:0048868: pollen tube development	4.61E-02
192	GO:0009960: endosperm development	4.61E-02
193	GO:0009958: positive gravitropism	4.61E-02
194	GO:0010154: fruit development	4.61E-02
195	GO:0010305: leaf vascular tissue pattern formation	4.61E-02
196	GO:0006396: RNA processing	4.79E-02
197	GO:0007018: microtubule-based movement	4.85E-02
198	GO:0042752: regulation of circadian rhythm	4.85E-02
199	GO:0009646: response to absence of light	4.85E-02
200	GO:0048544: recognition of pollen	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0042834: peptidoglycan binding	0.00E+00
3	GO:0071633: dihydroceramidase activity	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0017118: lipoyltransferase activity	1.16E-05
6	GO:0001872: (1->3)-beta-D-glucan binding	8.39E-05
7	GO:0010012: steroid 22-alpha hydroxylase activity	5.15E-04
8	GO:0050139: nicotinate-N-glucosyltransferase activity	5.15E-04
9	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	5.15E-04
10	GO:0005227: calcium activated cation channel activity	5.15E-04
11	GO:0004425: indole-3-glycerol-phosphate synthase activity	5.15E-04
12	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	5.15E-04
13	GO:0004134: 4-alpha-glucanotransferase activity	5.15E-04
14	GO:0008395: steroid hydroxylase activity	5.15E-04
15	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	5.15E-04
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.15E-04
17	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.11E-03
18	GO:0043425: bHLH transcription factor binding	1.11E-03
19	GO:0016415: octanoyltransferase activity	1.11E-03
20	GO:0008493: tetracycline transporter activity	1.11E-03
21	GO:0004412: homoserine dehydrogenase activity	1.11E-03
22	GO:0050736: O-malonyltransferase activity	1.11E-03
23	GO:0009884: cytokinin receptor activity	1.11E-03
24	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.30E-03
25	GO:0005034: osmosensor activity	1.81E-03
26	GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity	1.81E-03
27	GO:0052654: L-leucine transaminase activity	2.63E-03
28	GO:0052655: L-valine transaminase activity	2.63E-03
29	GO:0004072: aspartate kinase activity	2.63E-03
30	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.63E-03
31	GO:0016149: translation release factor activity, codon specific	2.63E-03
32	GO:0052656: L-isoleucine transaminase activity	2.63E-03
33	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.19E-03
34	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.54E-03
35	GO:0019104: DNA N-glycosylase activity	3.54E-03
36	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.54E-03
37	GO:0004084: branched-chain-amino-acid transaminase activity	3.54E-03
38	GO:0019199: transmembrane receptor protein kinase activity	3.54E-03
39	GO:0033612: receptor serine/threonine kinase binding	3.83E-03
40	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.54E-03
41	GO:0008725: DNA-3-methyladenine glycosylase activity	4.54E-03
42	GO:0043621: protein self-association	4.99E-03
43	GO:0080030: methyl indole-3-acetate esterase activity	5.63E-03
44	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.63E-03
45	GO:0004332: fructose-bisphosphate aldolase activity	5.63E-03
46	GO:0004709: MAP kinase kinase kinase activity	5.63E-03
47	GO:0004130: cytochrome-c peroxidase activity	5.63E-03
48	GO:0016688: L-ascorbate peroxidase activity	5.63E-03
49	GO:0019900: kinase binding	6.79E-03
50	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	6.79E-03
51	GO:0016832: aldehyde-lyase activity	6.79E-03
52	GO:0008173: RNA methyltransferase activity	1.08E-02
53	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.22E-02
54	GO:0003747: translation release factor activity	1.22E-02
55	GO:0030247: polysaccharide binding	1.34E-02
56	GO:0030234: enzyme regulator activity	1.54E-02
57	GO:0004673: protein histidine kinase activity	1.54E-02
58	GO:0004805: trehalose-phosphatase activity	1.54E-02
59	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.63E-02
60	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.70E-02
61	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.72E-02
62	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.88E-02
63	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.88E-02
64	GO:0004871: signal transducer activity	1.90E-02
65	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.91E-02
66	GO:0000155: phosphorelay sensor kinase activity	2.05E-02
67	GO:0050661: NADP binding	2.15E-02
68	GO:0003677: DNA binding	2.21E-02
69	GO:0008146: sulfotransferase activity	2.43E-02
70	GO:0003712: transcription cofactor activity	2.43E-02
71	GO:0009055: electron carrier activity	2.69E-02
72	GO:0051536: iron-sulfur cluster binding	2.83E-02
73	GO:0031418: L-ascorbic acid binding	2.83E-02
74	GO:0043424: protein histidine kinase binding	3.03E-02
75	GO:0005345: purine nucleobase transmembrane transporter activity	3.03E-02
76	GO:0010333: terpene synthase activity	3.24E-02
77	GO:0003964: RNA-directed DNA polymerase activity	3.24E-02
78	GO:0003690: double-stranded DNA binding	3.39E-02
79	GO:0003777: microtubule motor activity	3.63E-02
80	GO:0016788: hydrolase activity, acting on ester bonds	3.68E-02
81	GO:0003727: single-stranded RNA binding	3.90E-02
82	GO:0008514: organic anion transmembrane transporter activity	3.90E-02
83	GO:0016874: ligase activity	4.38E-02
84	GO:0005199: structural constituent of cell wall	4.61E-02
85	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.61E-02
86	GO:0001085: RNA polymerase II transcription factor binding	4.61E-02
87	GO:0015035: protein disulfide oxidoreductase activity	4.79E-02
88	GO:0050662: coenzyme binding	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0071821: FANCM-MHF complex	5.15E-04
3	GO:0043240: Fanconi anaemia nuclear complex	5.15E-04
4	GO:0030139: endocytic vesicle	1.81E-03
5	GO:0046658: anchored component of plasma membrane	1.89E-03
6	GO:0032585: multivesicular body membrane	2.63E-03
7	GO:0032432: actin filament bundle	2.63E-03
8	GO:0009654: photosystem II oxygen evolving complex	3.49E-03
9	GO:0009544: chloroplast ATP synthase complex	3.54E-03
10	GO:0019898: extrinsic component of membrane	7.28E-03
11	GO:0009986: cell surface	8.04E-03
12	GO:0009501: amyloplast	9.36E-03
13	GO:0010494: cytoplasmic stress granule	1.22E-02
14	GO:0042644: chloroplast nucleoid	1.22E-02
15	GO:0031225: anchored component of membrane	1.53E-02
16	GO:0005884: actin filament	1.70E-02
17	GO:0005578: proteinaceous extracellular matrix	2.05E-02
18	GO:0030095: chloroplast photosystem II	2.24E-02
19	GO:0009507: chloroplast	2.71E-02
20	GO:0042651: thylakoid membrane	3.03E-02
21	GO:0005871: kinesin complex	4.13E-02