co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G23880

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015822: ornithine transport	0.00E+00
2	GO:1901485: positive regulation of transcription factor catabolic process	0.00E+00
3	GO:0090393: sepal giant cell development	0.00E+00
4	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
5	GO:0006546: glycine catabolic process	3.78E-05
6	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.23E-04
7	GO:0045489: pectin biosynthetic process	1.76E-04
8	GO:0052543: callose deposition in cell wall	2.06E-04
9	GO:0006723: cuticle hydrocarbon biosynthetic process	2.32E-04
10	GO:0033481: galacturonate biosynthetic process	2.32E-04
11	GO:0000066: mitochondrial ornithine transport	2.32E-04
12	GO:1901349: glucosinolate transport	2.32E-04
13	GO:0090449: phloem glucosinolate loading	2.32E-04
14	GO:0071370: cellular response to gibberellin stimulus	2.32E-04
15	GO:0007267: cell-cell signaling	3.33E-04
16	GO:0043069: negative regulation of programmed cell death	4.30E-04
17	GO:0080167: response to karrikin	4.51E-04
18	GO:0000038: very long-chain fatty acid metabolic process	4.97E-04
19	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.15E-04
20	GO:2000123: positive regulation of stomatal complex development	5.15E-04
21	GO:0007154: cell communication	5.15E-04
22	GO:0030036: actin cytoskeleton organization	6.45E-04
23	GO:0071555: cell wall organization	6.98E-04
24	GO:0006633: fatty acid biosynthetic process	7.19E-04
25	GO:0016051: carbohydrate biosynthetic process	7.38E-04
26	GO:0005977: glycogen metabolic process	8.37E-04
27	GO:0006011: UDP-glucose metabolic process	8.37E-04
28	GO:0033591: response to L-ascorbic acid	8.37E-04
29	GO:0006000: fructose metabolic process	8.37E-04
30	GO:0043447: alkane biosynthetic process	8.37E-04
31	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	8.37E-04
32	GO:0006833: water transport	9.01E-04
33	GO:0042546: cell wall biogenesis	1.06E-03
34	GO:0032877: positive regulation of DNA endoreduplication	1.19E-03
35	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.19E-03
36	GO:0006166: purine ribonucleoside salvage	1.19E-03
37	GO:0032456: endocytic recycling	1.19E-03
38	GO:0051016: barbed-end actin filament capping	1.19E-03
39	GO:0006168: adenine salvage	1.19E-03
40	GO:0019722: calcium-mediated signaling	1.55E-03
41	GO:0010037: response to carbon dioxide	1.59E-03
42	GO:0006542: glutamine biosynthetic process	1.59E-03
43	GO:0019676: ammonia assimilation cycle	1.59E-03
44	GO:0015976: carbon utilization	1.59E-03
45	GO:0019464: glycine decarboxylation via glycine cleavage system	1.59E-03
46	GO:0009765: photosynthesis, light harvesting	1.59E-03
47	GO:0006749: glutathione metabolic process	1.59E-03
48	GO:2000122: negative regulation of stomatal complex development	1.59E-03
49	GO:2000038: regulation of stomatal complex development	1.59E-03
50	GO:0034220: ion transmembrane transport	1.81E-03
51	GO:0042335: cuticle development	1.81E-03
52	GO:0000271: polysaccharide biosynthetic process	1.81E-03
53	GO:0009741: response to brassinosteroid	1.95E-03
54	GO:0044209: AMP salvage	2.03E-03
55	GO:0010375: stomatal complex patterning	2.03E-03
56	GO:2000762: regulation of phenylpropanoid metabolic process	2.03E-03
57	GO:0010942: positive regulation of cell death	2.50E-03
58	GO:1900425: negative regulation of defense response to bacterium	2.50E-03
59	GO:0007264: small GTPase mediated signal transduction	2.56E-03
60	GO:0010583: response to cyclopentenone	2.56E-03
61	GO:0010555: response to mannitol	3.00E-03
62	GO:2000067: regulation of root morphogenesis	3.00E-03
63	GO:0045926: negative regulation of growth	3.00E-03
64	GO:0051510: regulation of unidimensional cell growth	3.54E-03
65	GO:0050829: defense response to Gram-negative bacterium	3.54E-03
66	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.65E-03
67	GO:0045010: actin nucleation	4.10E-03
68	GO:0008610: lipid biosynthetic process	4.10E-03
69	GO:0009850: auxin metabolic process	4.10E-03
70	GO:0009817: defense response to fungus, incompatible interaction	4.50E-03
71	GO:0006002: fructose 6-phosphate metabolic process	4.70E-03
72	GO:0022900: electron transport chain	4.70E-03
73	GO:0007186: G-protein coupled receptor signaling pathway	4.70E-03
74	GO:0010218: response to far red light	4.97E-03
75	GO:0007568: aging	5.21E-03
76	GO:0010119: regulation of stomatal movement	5.21E-03
77	GO:0006810: transport	5.24E-03
78	GO:0009056: catabolic process	5.32E-03
79	GO:0000902: cell morphogenesis	5.32E-03
80	GO:0009637: response to blue light	5.71E-03
81	GO:0009638: phototropism	5.97E-03
82	GO:0009870: defense response signaling pathway, resistance gene-dependent	6.65E-03
83	GO:0009750: response to fructose	7.35E-03
84	GO:0009773: photosynthetic electron transport in photosystem I	7.35E-03
85	GO:0010114: response to red light	7.36E-03
86	GO:0009744: response to sucrose	7.36E-03
87	GO:0016024: CDP-diacylglycerol biosynthetic process	8.08E-03
88	GO:0018107: peptidyl-threonine phosphorylation	8.84E-03
89	GO:0009725: response to hormone	8.84E-03
90	GO:0006094: gluconeogenesis	8.84E-03
91	GO:0009767: photosynthetic electron transport chain	8.84E-03
92	GO:0005986: sucrose biosynthetic process	8.84E-03
93	GO:0007049: cell cycle	9.21E-03
94	GO:0009416: response to light stimulus	9.58E-03
95	GO:0010143: cutin biosynthetic process	9.62E-03
96	GO:0019253: reductive pentose-phosphate cycle	9.62E-03
97	GO:0009225: nucleotide-sugar metabolic process	1.04E-02
98	GO:0042343: indole glucosinolate metabolic process	1.04E-02
99	GO:0005985: sucrose metabolic process	1.04E-02
100	GO:0010025: wax biosynthetic process	1.13E-02
101	GO:0005992: trehalose biosynthetic process	1.21E-02
102	GO:0009768: photosynthesis, light harvesting in photosystem I	1.30E-02
103	GO:0098542: defense response to other organism	1.39E-02
104	GO:0010017: red or far-red light signaling pathway	1.48E-02
105	GO:0051726: regulation of cell cycle	1.50E-02
106	GO:0009742: brassinosteroid mediated signaling pathway	1.50E-02
107	GO:0048653: anther development	1.87E-02
108	GO:0000226: microtubule cytoskeleton organization	1.87E-02
109	GO:0080022: primary root development	1.87E-02
110	GO:0009958: positive gravitropism	1.97E-02
111	GO:0007059: chromosome segregation	2.07E-02
112	GO:0019252: starch biosynthetic process	2.18E-02
113	GO:0009791: post-embryonic development	2.18E-02
114	GO:0009749: response to glucose	2.18E-02
115	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.29E-02
116	GO:0071554: cell wall organization or biogenesis	2.29E-02
117	GO:0040008: regulation of growth	2.34E-02
118	GO:0048235: pollen sperm cell differentiation	2.40E-02
119	GO:0019760: glucosinolate metabolic process	2.62E-02
120	GO:0009734: auxin-activated signaling pathway	2.66E-02
121	GO:0051607: defense response to virus	2.86E-02
122	GO:0016126: sterol biosynthetic process	2.98E-02
123	GO:0009733: response to auxin	3.26E-02
124	GO:0010411: xyloglucan metabolic process	3.34E-02
125	GO:0016311: dephosphorylation	3.47E-02
126	GO:0018298: protein-chromophore linkage	3.59E-02
127	GO:0000160: phosphorelay signal transduction system	3.72E-02
128	GO:0009407: toxin catabolic process	3.85E-02
129	GO:0051301: cell division	3.93E-02
130	GO:0009860: pollen tube growth	4.08E-02
131	GO:0009853: photorespiration	4.25E-02
132	GO:0006839: mitochondrial transport	4.67E-02
133	GO:0006631: fatty acid metabolic process	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
2	GO:0080132: fatty acid alpha-hydroxylase activity	0.00E+00
3	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
4	GO:0050613: delta14-sterol reductase activity	0.00E+00
5	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
6	GO:0019901: protein kinase binding	2.16E-04
7	GO:0090448: glucosinolate:proton symporter activity	2.32E-04
8	GO:0008252: nucleotidase activity	2.32E-04
9	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	2.32E-04
10	GO:0004047: aminomethyltransferase activity	5.15E-04
11	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.15E-04
12	GO:0000064: L-ornithine transmembrane transporter activity	5.15E-04
13	GO:0048531: beta-1,3-galactosyltransferase activity	5.15E-04
14	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	8.37E-04
15	GO:0001664: G-protein coupled receptor binding	8.37E-04
16	GO:0031683: G-protein beta/gamma-subunit complex binding	8.37E-04
17	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	9.01E-04
18	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	9.01E-04
19	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	9.01E-04
20	GO:0001872: (1->3)-beta-D-glucan binding	1.19E-03
21	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.19E-03
22	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.19E-03
23	GO:0003999: adenine phosphoribosyltransferase activity	1.19E-03
24	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.31E-03
25	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.59E-03
26	GO:0008453: alanine-glyoxylate transaminase activity	1.59E-03
27	GO:0050378: UDP-glucuronate 4-epimerase activity	1.59E-03
28	GO:0004356: glutamate-ammonia ligase activity	2.03E-03
29	GO:0009922: fatty acid elongase activity	2.03E-03
30	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.50E-03
31	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.50E-03
32	GO:0042578: phosphoric ester hydrolase activity	2.50E-03
33	GO:0016759: cellulose synthase activity	2.90E-03
34	GO:0016758: transferase activity, transferring hexosyl groups	2.95E-03
35	GO:0019900: kinase binding	3.00E-03
36	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.00E-03
37	GO:0015250: water channel activity	3.46E-03
38	GO:0016621: cinnamoyl-CoA reductase activity	3.54E-03
39	GO:0030247: polysaccharide binding	4.07E-03
40	GO:0004564: beta-fructofuranosidase activity	4.10E-03
41	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.97E-03
42	GO:0004575: sucrose alpha-glucosidase activity	5.97E-03
43	GO:0004805: trehalose-phosphatase activity	6.65E-03
44	GO:0004860: protein kinase inhibitor activity	7.35E-03
45	GO:0004089: carbonate dehydratase activity	8.84E-03
46	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.62E-03
47	GO:0003824: catalytic activity	9.91E-03
48	GO:0016757: transferase activity, transferring glycosyl groups	9.96E-03
49	GO:0031409: pigment binding	1.13E-02
50	GO:0008134: transcription factor binding	1.21E-02
51	GO:0004871: signal transducer activity	1.40E-02
52	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.46E-02
53	GO:0003924: GTPase activity	1.73E-02
54	GO:0008080: N-acetyltransferase activity	1.97E-02
55	GO:0005525: GTP binding	2.02E-02
56	GO:0004872: receptor activity	2.18E-02
57	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.29E-02
58	GO:0048038: quinone binding	2.29E-02
59	GO:0051015: actin filament binding	2.51E-02
60	GO:0000156: phosphorelay response regulator activity	2.51E-02
61	GO:0016791: phosphatase activity	2.62E-02
62	GO:0005506: iron ion binding	2.69E-02
63	GO:0008483: transaminase activity	2.74E-02
64	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.74E-02
65	GO:0005200: structural constituent of cytoskeleton	2.74E-02
66	GO:0016413: O-acetyltransferase activity	2.86E-02
67	GO:0016168: chlorophyll binding	3.10E-02
68	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.34E-02
69	GO:0046982: protein heterodimerization activity	3.72E-02
70	GO:0003993: acid phosphatase activity	4.39E-02
71	GO:0004364: glutathione transferase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009505: plant-type cell wall	7.42E-05
2	GO:0046658: anchored component of plasma membrane	2.24E-04
3	GO:0009344: nitrite reductase complex [NAD(P)H]	2.32E-04
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.09E-04
5	GO:0031225: anchored component of membrane	3.87E-04
6	GO:0005886: plasma membrane	6.85E-04
7	GO:0005775: vacuolar lumen	1.19E-03
8	GO:0035619: root hair tip	1.19E-03
9	GO:0005960: glycine cleavage complex	1.19E-03
10	GO:0009506: plasmodesma	1.48E-03
11	GO:0048046: apoplast	1.50E-03
12	GO:0032588: trans-Golgi network membrane	2.50E-03
13	GO:0016021: integral component of membrane	2.78E-03
14	GO:0005794: Golgi apparatus	3.96E-03
15	GO:0000139: Golgi membrane	4.47E-03
16	GO:0031901: early endosome membrane	5.32E-03
17	GO:0031902: late endosome membrane	6.78E-03
18	GO:0005765: lysosomal membrane	7.35E-03
19	GO:0048471: perinuclear region of cytoplasm	7.35E-03
20	GO:0019013: viral nucleocapsid	8.84E-03
21	GO:0030095: chloroplast photosystem II	9.62E-03
22	GO:0030076: light-harvesting complex	1.04E-02
23	GO:0030176: integral component of endoplasmic reticulum membrane	1.04E-02
24	GO:0009534: chloroplast thylakoid	1.27E-02
25	GO:0009654: photosystem II oxygen evolving complex	1.30E-02
26	GO:0005789: endoplasmic reticulum membrane	1.75E-02
27	GO:0009543: chloroplast thylakoid lumen	1.78E-02
28	GO:0009941: chloroplast envelope	1.97E-02
29	GO:0009522: photosystem I	2.07E-02
30	GO:0009523: photosystem II	2.18E-02
31	GO:0019898: extrinsic component of membrane	2.18E-02
32	GO:0032580: Golgi cisterna membrane	2.62E-02
33	GO:0005576: extracellular region	2.80E-02
34	GO:0009535: chloroplast thylakoid membrane	3.33E-02
35	GO:0009570: chloroplast stroma	3.86E-02
36	GO:0000325: plant-type vacuole	3.98E-02
37	GO:0000786: nucleosome	4.12E-02
38	GO:0009579: thylakoid	4.41E-02
39	GO:0005819: spindle	4.53E-02