gene detail

Gene description

TAIR ID: AT5G54180

Short description: plastid transcriptionally active 15

Pathogen responsiveness: -0.94

General responsiveness: 0.14

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

regulation of transcription, DNA-templated, ribosome assembly, developmental process, RNA splicing, DNA-templated transcription, termination, chloroplast organization

GO cellular component

chloroplast, nucleoid, mitochondrion, plastid chromosome

GO molecular function

single-stranded RNA binding, rRNA binding, double-stranded DNA binding

Protein domain

Pfam	PF02536, mTERF
SMART	SM00733, Mterf

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G41315, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

10 conditions

Show entries

Search:

Series	Control	Treatment	Log₂FC	Adj. P value
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.55	6.17E-05
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.65	2.48E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.70	1.92E-12
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.74	5.10E-04
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-1.74	1.86E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.85	2.05E-04
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	-1.89	3.10E-04
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-2.01	1.36E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.08	9.85E-14
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.11	4.44E-10

Showing 1 to 10 of 10 entries

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