Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G54180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
2GO:0042820: vitamin B6 catabolic process0.00E+00
3GO:0097164: ammonium ion metabolic process0.00E+00
4GO:0018023: peptidyl-lysine trimethylation0.00E+00
5GO:0006399: tRNA metabolic process0.00E+00
6GO:0018160: peptidyl-pyrromethane cofactor linkage0.00E+00
7GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
8GO:0006223: uracil salvage0.00E+00
9GO:0090071: negative regulation of ribosome biogenesis0.00E+00
10GO:0016553: base conversion or substitution editing0.00E+00
11GO:2000121: regulation of removal of superoxide radicals0.00E+00
12GO:0042821: pyridoxal biosynthetic process0.00E+00
13GO:0006412: translation1.75E-15
14GO:0015995: chlorophyll biosynthetic process2.09E-14
15GO:0009735: response to cytokinin1.71E-11
16GO:0042254: ribosome biogenesis3.19E-11
17GO:0032544: plastid translation4.58E-11
18GO:0015979: photosynthesis2.52E-10
19GO:0009658: chloroplast organization4.62E-10
20GO:0010027: thylakoid membrane organization6.85E-10
21GO:0090391: granum assembly9.33E-08
22GO:0010207: photosystem II assembly1.61E-07
23GO:0006782: protoporphyrinogen IX biosynthetic process2.01E-06
24GO:0006783: heme biosynthetic process4.26E-05
25GO:0009773: photosynthetic electron transport in photosystem I9.09E-05
26GO:0045038: protein import into chloroplast thylakoid membrane1.82E-04
27GO:0031365: N-terminal protein amino acid modification1.82E-04
28GO:0016123: xanthophyll biosynthetic process1.82E-04
29GO:0006655: phosphatidylglycerol biosynthetic process2.58E-04
30GO:0010190: cytochrome b6f complex assembly2.58E-04
31GO:1901259: chloroplast rRNA processing3.46E-04
32GO:0042372: phylloquinone biosynthetic process3.46E-04
33GO:0009772: photosynthetic electron transport in photosystem II4.45E-04
34GO:0010196: nonphotochemical quenching4.45E-04
35GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process4.53E-04
36GO:1904966: positive regulation of vitamin E biosynthetic process4.53E-04
37GO:1904964: positive regulation of phytol biosynthetic process4.53E-04
38GO:0042371: vitamin K biosynthetic process4.53E-04
39GO:0043686: co-translational protein modification4.53E-04
40GO:1902458: positive regulation of stomatal opening4.53E-04
41GO:0034337: RNA folding4.53E-04
42GO:0006434: seryl-tRNA aminoacylation4.53E-04
43GO:0009443: pyridoxal 5'-phosphate salvage4.53E-04
44GO:0043489: RNA stabilization4.53E-04
45GO:0042255: ribosome assembly5.55E-04
46GO:0048564: photosystem I assembly5.55E-04
47GO:0006633: fatty acid biosynthetic process7.00E-04
48GO:0032502: developmental process9.19E-04
49GO:0045454: cell redox homeostasis9.32E-04
50GO:0006779: porphyrin-containing compound biosynthetic process9.56E-04
51GO:0018026: peptidyl-lysine monomethylation9.79E-04
52GO:0080183: response to photooxidative stress9.79E-04
53GO:0006529: asparagine biosynthetic process9.79E-04
54GO:0008616: queuosine biosynthetic process9.79E-04
55GO:0006729: tetrahydrobiopterin biosynthetic process9.79E-04
56GO:1903426: regulation of reactive oxygen species biosynthetic process9.79E-04
57GO:0006568: tryptophan metabolic process9.79E-04
58GO:0043039: tRNA aminoacylation9.79E-04
59GO:0019388: galactose catabolic process9.79E-04
60GO:1902326: positive regulation of chlorophyll biosynthetic process9.79E-04
61GO:0070981: L-asparagine biosynthetic process9.79E-04
62GO:0016024: CDP-diacylglycerol biosynthetic process1.47E-03
63GO:0045037: protein import into chloroplast stroma1.47E-03
64GO:0009627: systemic acquired resistance1.55E-03
65GO:0009409: response to cold1.58E-03
66GO:0051604: protein maturation1.59E-03
67GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.59E-03
68GO:0006760: folic acid-containing compound metabolic process1.59E-03
69GO:0006518: peptide metabolic process1.59E-03
70GO:0006006: glucose metabolic process1.67E-03
71GO:0006165: nucleoside diphosphate phosphorylation2.31E-03
72GO:0006228: UTP biosynthetic process2.31E-03
73GO:0009590: detection of gravity2.31E-03
74GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.31E-03
75GO:2001141: regulation of RNA biosynthetic process2.31E-03
76GO:0071484: cellular response to light intensity2.31E-03
77GO:0051085: chaperone mediated protein folding requiring cofactor2.31E-03
78GO:0009052: pentose-phosphate shunt, non-oxidative branch2.31E-03
79GO:0006241: CTP biosynthetic process2.31E-03
80GO:0019344: cysteine biosynthetic process2.61E-03
81GO:0009790: embryo development2.89E-03
82GO:0006021: inositol biosynthetic process3.10E-03
83GO:0030007: cellular potassium ion homeostasis3.10E-03
84GO:0044206: UMP salvage3.10E-03
85GO:0010037: response to carbon dioxide3.10E-03
86GO:0015976: carbon utilization3.10E-03
87GO:0009765: photosynthesis, light harvesting3.10E-03
88GO:0006183: GTP biosynthetic process3.10E-03
89GO:2000122: negative regulation of stomatal complex development3.10E-03
90GO:0046656: folic acid biosynthetic process3.10E-03
91GO:0007005: mitochondrion organization3.47E-03
92GO:0032543: mitochondrial translation3.98E-03
93GO:0016120: carotene biosynthetic process3.98E-03
94GO:0010236: plastoquinone biosynthetic process3.98E-03
95GO:0043097: pyrimidine nucleoside salvage3.98E-03
96GO:0009247: glycolipid biosynthetic process3.98E-03
97GO:0034052: positive regulation of plant-type hypersensitive response3.98E-03
98GO:0016117: carotenoid biosynthetic process4.46E-03
99GO:0000413: protein peptidyl-prolyl isomerization4.82E-03
100GO:0006206: pyrimidine nucleobase metabolic process4.92E-03
101GO:0032973: amino acid export4.92E-03
102GO:0009117: nucleotide metabolic process4.92E-03
103GO:0046855: inositol phosphate dephosphorylation4.92E-03
104GO:0017148: negative regulation of translation5.94E-03
105GO:0046654: tetrahydrofolate biosynthetic process5.94E-03
106GO:0010189: vitamin E biosynthetic process5.94E-03
107GO:0009854: oxidative photosynthetic carbon pathway5.94E-03
108GO:0010019: chloroplast-nucleus signaling pathway5.94E-03
109GO:0010555: response to mannitol5.94E-03
110GO:0009955: adaxial/abaxial pattern specification5.94E-03
111GO:0071470: cellular response to osmotic stress5.94E-03
112GO:0042026: protein refolding5.94E-03
113GO:0042742: defense response to bacterium6.21E-03
114GO:0006400: tRNA modification7.03E-03
115GO:0006826: iron ion transport7.03E-03
116GO:0043090: amino acid import7.03E-03
117GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.03E-03
118GO:0006457: protein folding7.30E-03
119GO:0043068: positive regulation of programmed cell death8.18E-03
120GO:0006605: protein targeting8.18E-03
121GO:0019375: galactolipid biosynthetic process8.18E-03
122GO:0006353: DNA-templated transcription, termination8.18E-03
123GO:2000070: regulation of response to water deprivation8.18E-03
124GO:0005978: glycogen biosynthetic process8.18E-03
125GO:0009819: drought recovery8.18E-03
126GO:0009642: response to light intensity8.18E-03
127GO:0009657: plastid organization9.38E-03
128GO:0017004: cytochrome complex assembly9.38E-03
129GO:0071482: cellular response to light stimulus9.38E-03
130GO:0015996: chlorophyll catabolic process9.38E-03
131GO:0007186: G-protein coupled receptor signaling pathway9.38E-03
132GO:0048589: developmental growth1.07E-02
133GO:0009245: lipid A biosynthetic process1.07E-02
134GO:0010206: photosystem II repair1.07E-02
135GO:0080144: amino acid homeostasis1.07E-02
136GO:0034765: regulation of ion transmembrane transport1.07E-02
137GO:0006535: cysteine biosynthetic process from serine1.34E-02
138GO:0010119: regulation of stomatal movement1.41E-02
139GO:0006352: DNA-templated transcription, initiation1.48E-02
140GO:0006415: translational termination1.48E-02
141GO:0019684: photosynthesis, light reaction1.48E-02
142GO:0009073: aromatic amino acid family biosynthetic process1.48E-02
143GO:0043085: positive regulation of catalytic activity1.48E-02
144GO:0034599: cellular response to oxidative stress1.62E-02
145GO:0006790: sulfur compound metabolic process1.63E-02
146GO:0010628: positive regulation of gene expression1.79E-02
147GO:0009767: photosynthetic electron transport chain1.79E-02
148GO:0019253: reductive pentose-phosphate cycle1.95E-02
149GO:0006541: glutamine metabolic process1.95E-02
150GO:0010020: chloroplast fission1.95E-02
151GO:0010039: response to iron ion2.12E-02
152GO:0046854: phosphatidylinositol phosphorylation2.12E-02
153GO:0019853: L-ascorbic acid biosynthetic process2.12E-02
154GO:0010167: response to nitrate2.12E-02
155GO:0007010: cytoskeleton organization2.46E-02
156GO:0009116: nucleoside metabolic process2.46E-02
157GO:0000027: ribosomal large subunit assembly2.46E-02
158GO:0042538: hyperosmotic salinity response2.52E-02
159GO:0007017: microtubule-based process2.64E-02
160GO:0051260: protein homooligomerization2.82E-02
161GO:0019915: lipid storage2.82E-02
162GO:0061077: chaperone-mediated protein folding2.82E-02
163GO:0009814: defense response, incompatible interaction3.01E-02
164GO:0016226: iron-sulfur cluster assembly3.01E-02
165GO:0009411: response to UV3.20E-02
166GO:0006012: galactose metabolic process3.20E-02
167GO:0009306: protein secretion3.40E-02
168GO:0080167: response to karrikin3.69E-02
169GO:0042335: cuticle development3.81E-02
170GO:0008033: tRNA processing3.81E-02
171GO:0006662: glycerol ether metabolic process4.01E-02
172GO:0010182: sugar mediated signaling pathway4.01E-02
173GO:0009741: response to brassinosteroid4.01E-02
174GO:0009416: response to light stimulus4.22E-02
175GO:0015986: ATP synthesis coupled proton transport4.23E-02
176GO:0009646: response to absence of light4.23E-02
177GO:0019252: starch biosynthetic process4.44E-02
178GO:0008654: phospholipid biosynthetic process4.44E-02
RankGO TermAdjusted P value
1GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
4GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
5GO:0004418: hydroxymethylbilane synthase activity0.00E+00
6GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
7GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
8GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
9GO:0046408: chlorophyll synthetase activity0.00E+00
10GO:0005048: signal sequence binding0.00E+00
11GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
12GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
13GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
14GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
15GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
16GO:0008887: glycerate kinase activity0.00E+00
17GO:0045550: geranylgeranyl reductase activity0.00E+00
18GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
19GO:0015269: calcium-activated potassium channel activity0.00E+00
20GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
21GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
22GO:0019843: rRNA binding6.47E-21
23GO:0003735: structural constituent of ribosome5.97E-18
24GO:0016851: magnesium chelatase activity4.48E-07
25GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.66E-07
26GO:0005528: FK506 binding2.60E-04
27GO:0051920: peroxiredoxin activity3.46E-04
28GO:0004071: aspartate-ammonia ligase activity4.53E-04
29GO:0042586: peptide deformylase activity4.53E-04
30GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.53E-04
31GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.53E-04
32GO:0010347: L-galactose-1-phosphate phosphatase activity4.53E-04
33GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.53E-04
34GO:0030794: (S)-coclaurine-N-methyltransferase activity4.53E-04
35GO:0004425: indole-3-glycerol-phosphate synthase activity4.53E-04
36GO:0004560: alpha-L-fucosidase activity4.53E-04
37GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.53E-04
38GO:0004828: serine-tRNA ligase activity4.53E-04
39GO:0009374: biotin binding4.53E-04
40GO:0004033: aldo-keto reductase (NADP) activity5.55E-04
41GO:0016209: antioxidant activity5.55E-04
42GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity9.79E-04
43GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity9.79E-04
44GO:0102083: 7,8-dihydromonapterin aldolase activity9.79E-04
45GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity9.79E-04
46GO:0052832: inositol monophosphate 3-phosphatase activity9.79E-04
47GO:0008479: queuine tRNA-ribosyltransferase activity9.79E-04
48GO:0016630: protochlorophyllide reductase activity9.79E-04
49GO:0008934: inositol monophosphate 1-phosphatase activity9.79E-04
50GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity9.79E-04
51GO:0004614: phosphoglucomutase activity9.79E-04
52GO:0004150: dihydroneopterin aldolase activity9.79E-04
53GO:0052833: inositol monophosphate 4-phosphatase activity9.79E-04
54GO:0004148: dihydrolipoyl dehydrogenase activity1.59E-03
55GO:0004751: ribose-5-phosphate isomerase activity1.59E-03
56GO:0070402: NADPH binding1.59E-03
57GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.59E-03
58GO:0008266: poly(U) RNA binding1.88E-03
59GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.31E-03
60GO:0004550: nucleoside diphosphate kinase activity2.31E-03
61GO:0043023: ribosomal large subunit binding2.31E-03
62GO:0008097: 5S rRNA binding2.31E-03
63GO:0035529: NADH pyrophosphatase activity2.31E-03
64GO:0035250: UDP-galactosyltransferase activity2.31E-03
65GO:0016149: translation release factor activity, codon specific2.31E-03
66GO:0043495: protein anchor3.10E-03
67GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.10E-03
68GO:0004659: prenyltransferase activity3.10E-03
69GO:0016279: protein-lysine N-methyltransferase activity3.10E-03
70GO:0001053: plastid sigma factor activity3.10E-03
71GO:0004845: uracil phosphoribosyltransferase activity3.10E-03
72GO:0016987: sigma factor activity3.10E-03
73GO:1990137: plant seed peroxidase activity3.10E-03
74GO:0004040: amidase activity3.98E-03
75GO:0003989: acetyl-CoA carboxylase activity3.98E-03
76GO:0003959: NADPH dehydrogenase activity3.98E-03
77GO:0030414: peptidase inhibitor activity3.98E-03
78GO:0003727: single-stranded RNA binding4.12E-03
79GO:0016462: pyrophosphatase activity4.92E-03
80GO:0015271: outward rectifier potassium channel activity4.92E-03
81GO:0004605: phosphatidate cytidylyltransferase activity4.92E-03
82GO:0031177: phosphopantetheine binding4.92E-03
83GO:0016208: AMP binding4.92E-03
84GO:0005509: calcium ion binding5.22E-03
85GO:0003690: double-stranded DNA binding5.40E-03
86GO:0004124: cysteine synthase activity5.94E-03
87GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.94E-03
88GO:0004849: uridine kinase activity5.94E-03
89GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.94E-03
90GO:0000035: acyl binding5.94E-03
91GO:0008235: metalloexopeptidase activity7.03E-03
92GO:0019899: enzyme binding7.03E-03
93GO:0004601: peroxidase activity7.27E-03
94GO:0008312: 7S RNA binding8.18E-03
95GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process8.18E-03
96GO:0004034: aldose 1-epimerase activity8.18E-03
97GO:0008237: metallopeptidase activity8.30E-03
98GO:0005200: structural constituent of cytoskeleton8.30E-03
99GO:0015035: protein disulfide oxidoreductase activity8.42E-03
100GO:0005267: potassium channel activity9.38E-03
101GO:0003747: translation release factor activity1.07E-02
102GO:0008047: enzyme activator activity1.34E-02
103GO:0004222: metalloendopeptidase activity1.35E-02
104GO:0003729: mRNA binding1.45E-02
105GO:0008794: arsenate reductase (glutaredoxin) activity1.48E-02
106GO:0004177: aminopeptidase activity1.48E-02
107GO:0044183: protein binding involved in protein folding1.48E-02
108GO:0003723: RNA binding1.49E-02
109GO:0051539: 4 iron, 4 sulfur cluster binding1.77E-02
110GO:0004089: carbonate dehydratase activity1.79E-02
111GO:0031072: heat shock protein binding1.79E-02
112GO:0051537: 2 iron, 2 sulfur cluster binding2.17E-02
113GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.29E-02
114GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.29E-02
115GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.29E-02
116GO:0051536: iron-sulfur cluster binding2.46E-02
117GO:0005216: ion channel activity2.64E-02
118GO:0004176: ATP-dependent peptidase activity2.82E-02
119GO:0016491: oxidoreductase activity2.91E-02
120GO:0022891: substrate-specific transmembrane transporter activity3.20E-02
121GO:0047134: protein-disulfide reductase activity3.60E-02
122GO:0051082: unfolded protein binding3.84E-02
123GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.01E-02
124GO:0052689: carboxylic ester hydrolase activity4.18E-02
125GO:0010181: FMN binding4.23E-02
126GO:0004791: thioredoxin-disulfide reductase activity4.23E-02
127GO:0016853: isomerase activity4.23E-02
128GO:0016762: xyloglucan:xyloglucosyl transferase activity4.66E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009575: chromoplast stroma0.00E+00
4GO:0009507: chloroplast1.72E-106
5GO:0009570: chloroplast stroma1.94E-71
6GO:0009941: chloroplast envelope2.84E-57
7GO:0009535: chloroplast thylakoid membrane8.45E-49
8GO:0009579: thylakoid6.78E-36
9GO:0009543: chloroplast thylakoid lumen1.63E-22
10GO:0005840: ribosome1.65E-21
11GO:0009534: chloroplast thylakoid1.86E-18
12GO:0031977: thylakoid lumen1.20E-14
13GO:0009654: photosystem II oxygen evolving complex2.16E-10
14GO:0009536: plastid2.20E-08
15GO:0019898: extrinsic component of membrane1.53E-07
16GO:0031969: chloroplast membrane2.55E-07
17GO:0000311: plastid large ribosomal subunit3.94E-06
18GO:0048046: apoplast5.20E-06
19GO:0030095: chloroplast photosystem II7.00E-06
20GO:0010319: stromule1.01E-05
21GO:0010007: magnesium chelatase complex3.12E-05
22GO:0042651: thylakoid membrane2.98E-04
23GO:0009706: chloroplast inner membrane3.05E-04
24GO:0015935: small ribosomal subunit3.39E-04
25GO:0015934: large ribosomal subunit3.48E-04
26GO:0009344: nitrite reductase complex [NAD(P)H]4.53E-04
27GO:0009547: plastid ribosome4.53E-04
28GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.53E-04
29GO:0080085: signal recognition particle, chloroplast targeting9.79E-04
30GO:0009509: chromoplast1.59E-03
31GO:0009317: acetyl-CoA carboxylase complex1.59E-03
32GO:0009528: plastid inner membrane1.59E-03
33GO:0009527: plastid outer membrane3.10E-03
34GO:0009526: plastid envelope3.10E-03
35GO:0009532: plastid stroma3.17E-03
36GO:0055035: plastid thylakoid membrane3.98E-03
37GO:0022626: cytosolic ribosome4.03E-03
38GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.92E-03
39GO:0009533: chloroplast stromal thylakoid7.03E-03
40GO:0009538: photosystem I reaction center8.18E-03
41GO:0005786: signal recognition particle, endoplasmic reticulum targeting9.38E-03
42GO:0005811: lipid particle9.38E-03
43GO:0009539: photosystem II reaction center9.38E-03
44GO:0010287: plastoglobule1.01E-02
45GO:0045298: tubulin complex1.07E-02
46GO:0005763: mitochondrial small ribosomal subunit1.07E-02
47GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.07E-02
48GO:0016020: membrane1.10E-02
49GO:0009707: chloroplast outer membrane1.22E-02
50GO:0032040: small-subunit processome1.63E-02
51GO:0005618: cell wall2.34E-02
52GO:0022625: cytosolic large ribosomal subunit3.93E-02
53GO:0009523: photosystem II4.44E-02
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Gene type



Gene DE type