co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0009657: plastid organization	5.65E-06
5	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	1.97E-05
6	GO:1904966: positive regulation of vitamin E biosynthetic process	1.97E-05
7	GO:1904964: positive regulation of phytol biosynthetic process	1.97E-05
8	GO:0042371: vitamin K biosynthetic process	1.97E-05
9	GO:0006434: seryl-tRNA aminoacylation	1.97E-05
10	GO:0043039: tRNA aminoacylation	5.10E-05
11	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.10E-05
12	GO:0006424: glutamyl-tRNA aminoacylation	1.36E-04
13	GO:0015995: chlorophyll biosynthetic process	1.66E-04
14	GO:0048481: plant ovule development	1.85E-04
15	GO:0015979: photosynthesis	1.94E-04
16	GO:0032543: mitochondrial translation	2.40E-04
17	GO:0010236: plastoquinone biosynthetic process	2.40E-04
18	GO:0006461: protein complex assembly	2.40E-04
19	GO:0010190: cytochrome b6f complex assembly	2.97E-04
20	GO:0042372: phylloquinone biosynthetic process	3.57E-04
21	GO:1901259: chloroplast rRNA processing	3.57E-04
22	GO:0006400: tRNA modification	4.19E-04
23	GO:0009772: photosynthetic electron transport in photosystem II	4.19E-04
24	GO:0045010: actin nucleation	4.84E-04
25	GO:0048564: photosystem I assembly	4.84E-04
26	GO:0045292: mRNA cis splicing, via spliceosome	4.84E-04
27	GO:0042255: ribosome assembly	4.84E-04
28	GO:0006353: DNA-templated transcription, termination	4.84E-04
29	GO:0000373: Group II intron splicing	6.19E-04
30	GO:1900865: chloroplast RNA modification	6.90E-04
31	GO:0031425: chloroplast RNA processing	6.90E-04
32	GO:0030036: actin cytoskeleton organization	9.90E-04
33	GO:0009451: RNA modification	9.98E-04
34	GO:0006508: proteolysis	1.02E-03
35	GO:0010207: photosystem II assembly	1.07E-03
36	GO:0006418: tRNA aminoacylation for protein translation	1.41E-03
37	GO:0009658: chloroplast organization	1.48E-03
38	GO:0007005: mitochondrion organization	1.59E-03
39	GO:0008033: tRNA processing	1.98E-03
40	GO:0080156: mitochondrial mRNA modification	2.40E-03
41	GO:0032502: developmental process	2.50E-03
42	GO:0010090: trichome morphogenesis	2.61E-03
43	GO:0018298: protein-chromophore linkage	3.68E-03
44	GO:0009790: embryo development	1.05E-02
45	GO:0008380: RNA splicing	1.34E-02
46	GO:0006397: mRNA processing	2.55E-02
47	GO:0008152: metabolic process	2.65E-02
48	GO:0009735: response to cytokinin	3.49E-02
49	GO:0055085: transmembrane transport	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
5	GO:0008237: metallopeptidase activity	1.98E-06
6	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.97E-05
7	GO:0004828: serine-tRNA ligase activity	1.97E-05
8	GO:0003867: 4-aminobutyrate transaminase activity	1.97E-05
9	GO:0004176: ATP-dependent peptidase activity	4.08E-05
10	GO:0016630: protochlorophyllide reductase activity	5.10E-05
11	GO:0002161: aminoacyl-tRNA editing activity	9.05E-05
12	GO:0003723: RNA binding	1.74E-04
13	GO:0004659: prenyltransferase activity	1.86E-04
14	GO:0043495: protein anchor	1.86E-04
15	GO:0003959: NADPH dehydrogenase activity	2.40E-04
16	GO:0004519: endonuclease activity	3.07E-04
17	GO:0019899: enzyme binding	4.19E-04
18	GO:0004033: aldo-keto reductase (NADP) activity	4.84E-04
19	GO:0019843: rRNA binding	7.20E-04
20	GO:0000049: tRNA binding	9.12E-04
21	GO:0022891: substrate-specific transmembrane transporter activity	1.68E-03
22	GO:0003727: single-stranded RNA binding	1.78E-03
23	GO:0004812: aminoacyl-tRNA ligase activity	1.88E-03
24	GO:0016168: chlorophyll binding	3.19E-03
25	GO:0004222: metalloendopeptidase activity	3.93E-03
26	GO:0051539: 4 iron, 4 sulfur cluster binding	4.72E-03
27	GO:0016740: transferase activity	5.73E-03
28	GO:0003690: double-stranded DNA binding	6.46E-03
29	GO:0080043: quercetin 3-O-glucosyltransferase activity	7.56E-03
30	GO:0080044: quercetin 7-O-glucosyltransferase activity	7.56E-03
31	GO:0008194: UDP-glycosyltransferase activity	1.28E-02
32	GO:0042802: identical protein binding	1.40E-02
33	GO:0003729: mRNA binding	1.42E-02
34	GO:0004601: peroxidase activity	1.61E-02
35	GO:0016887: ATPase activity	3.38E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.37E-17
2	GO:0009535: chloroplast thylakoid membrane	1.68E-08
3	GO:0009941: chloroplast envelope	3.06E-07
4	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.97E-05
5	GO:0042651: thylakoid membrane	3.65E-05
6	GO:0009523: photosystem II	8.58E-05
7	GO:0009570: chloroplast stroma	1.16E-04
8	GO:0031969: chloroplast membrane	1.62E-04
9	GO:0031977: thylakoid lumen	2.83E-04
10	GO:0031209: SCAR complex	2.97E-04
11	GO:0043231: intracellular membrane-bounded organelle	3.12E-04
12	GO:0009533: chloroplast stromal thylakoid	4.19E-04
13	GO:0009579: thylakoid	7.16E-04
14	GO:0009543: chloroplast thylakoid lumen	7.20E-04
15	GO:0009534: chloroplast thylakoid	7.26E-04
16	GO:0030095: chloroplast photosystem II	1.07E-03
17	GO:0009536: plastid	1.77E-03
18	GO:0005739: mitochondrion	2.19E-03
19	GO:0030529: intracellular ribonucleoprotein complex	3.07E-03
20	GO:0005840: ribosome	9.97E-03