co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
2	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
3	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
4	GO:1905157: positive regulation of photosynthesis	0.00E+00
5	GO:0097275: cellular ammonia homeostasis	0.00E+00
6	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
7	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
8	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
9	GO:0051924: regulation of calcium ion transport	0.00E+00
10	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
11	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
12	GO:0042821: pyridoxal biosynthetic process	0.00E+00
13	GO:0042820: vitamin B6 catabolic process	0.00E+00
14	GO:1901259: chloroplast rRNA processing	4.27E-08
15	GO:0009657: plastid organization	1.75E-05
16	GO:0009658: chloroplast organization	2.82E-05
17	GO:0006021: inositol biosynthetic process	7.90E-05
18	GO:0010027: thylakoid membrane organization	9.31E-05
19	GO:0009955: adaxial/abaxial pattern specification	2.41E-04
20	GO:0006659: phosphatidylserine biosynthetic process	3.57E-04
21	GO:0065002: intracellular protein transmembrane transport	3.57E-04
22	GO:0043686: co-translational protein modification	3.57E-04
23	GO:0043007: maintenance of rDNA	3.57E-04
24	GO:0034337: RNA folding	3.57E-04
25	GO:0005991: trehalose metabolic process	3.57E-04
26	GO:0000476: maturation of 4.5S rRNA	3.57E-04
27	GO:0009443: pyridoxal 5'-phosphate salvage	3.57E-04
28	GO:0000967: rRNA 5'-end processing	3.57E-04
29	GO:1905039: carboxylic acid transmembrane transport	3.57E-04
30	GO:0080112: seed growth	3.57E-04
31	GO:1905200: gibberellic acid transmembrane transport	3.57E-04
32	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	3.57E-04
33	GO:0043953: protein transport by the Tat complex	3.57E-04
34	GO:0032544: plastid translation	4.81E-04
35	GO:0019252: starch biosynthetic process	4.97E-04
36	GO:0006898: receptor-mediated endocytosis	7.77E-04
37	GO:0034755: iron ion transmembrane transport	7.77E-04
38	GO:0018026: peptidyl-lysine monomethylation	7.77E-04
39	GO:0000256: allantoin catabolic process	7.77E-04
40	GO:0071457: cellular response to ozone	7.77E-04
41	GO:1904143: positive regulation of carotenoid biosynthetic process	7.77E-04
42	GO:0034470: ncRNA processing	7.77E-04
43	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.77E-04
44	GO:0015995: chlorophyll biosynthetic process	1.06E-03
45	GO:0006696: ergosterol biosynthetic process	1.26E-03
46	GO:0005977: glycogen metabolic process	1.26E-03
47	GO:0006954: inflammatory response	1.26E-03
48	GO:0010136: ureide catabolic process	1.26E-03
49	GO:0034051: negative regulation of plant-type hypersensitive response	1.26E-03
50	GO:0006168: adenine salvage	1.81E-03
51	GO:0071786: endoplasmic reticulum tubular network organization	1.81E-03
52	GO:0016556: mRNA modification	1.81E-03
53	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.81E-03
54	GO:0045338: farnesyl diphosphate metabolic process	1.81E-03
55	GO:0006166: purine ribonucleoside salvage	1.81E-03
56	GO:0006020: inositol metabolic process	1.81E-03
57	GO:0071484: cellular response to light intensity	1.81E-03
58	GO:0009152: purine ribonucleotide biosynthetic process	1.81E-03
59	GO:0046653: tetrahydrofolate metabolic process	1.81E-03
60	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.81E-03
61	GO:0006145: purine nucleobase catabolic process	1.81E-03
62	GO:0006418: tRNA aminoacylation for protein translation	2.03E-03
63	GO:0010114: response to red light	2.24E-03
64	GO:0071483: cellular response to blue light	2.44E-03
65	GO:0010021: amylopectin biosynthetic process	2.44E-03
66	GO:0071486: cellular response to high light intensity	2.44E-03
67	GO:0009765: photosynthesis, light harvesting	2.44E-03
68	GO:0010107: potassium ion import	2.44E-03
69	GO:0032543: mitochondrial translation	3.11E-03
70	GO:0098719: sodium ion import across plasma membrane	3.11E-03
71	GO:0006564: L-serine biosynthetic process	3.11E-03
72	GO:0009904: chloroplast accumulation movement	3.11E-03
73	GO:0031365: N-terminal protein amino acid modification	3.11E-03
74	GO:0044209: AMP salvage	3.11E-03
75	GO:0006465: signal peptide processing	3.11E-03
76	GO:0071493: cellular response to UV-B	3.11E-03
77	GO:0000741: karyogamy	3.85E-03
78	GO:0009228: thiamine biosynthetic process	3.85E-03
79	GO:0046855: inositol phosphate dephosphorylation	3.85E-03
80	GO:0009643: photosynthetic acclimation	3.85E-03
81	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.85E-03
82	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.85E-03
83	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.85E-03
84	GO:1902456: regulation of stomatal opening	3.85E-03
85	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.85E-03
86	GO:0055114: oxidation-reduction process	4.01E-03
87	GO:0009791: post-embryonic development	4.20E-03
88	GO:0048280: vesicle fusion with Golgi apparatus	4.64E-03
89	GO:0009903: chloroplast avoidance movement	4.64E-03
90	GO:0071333: cellular response to glucose stimulus	4.64E-03
91	GO:0032502: developmental process	4.81E-03
92	GO:1901657: glycosyl compound metabolic process	5.12E-03
93	GO:0009769: photosynthesis, light harvesting in photosystem II	5.48E-03
94	GO:1900056: negative regulation of leaf senescence	5.48E-03
95	GO:0009645: response to low light intensity stimulus	5.48E-03
96	GO:0006353: DNA-templated transcription, termination	6.37E-03
97	GO:0010078: maintenance of root meristem identity	6.37E-03
98	GO:0070413: trehalose metabolism in response to stress	6.37E-03
99	GO:0055075: potassium ion homeostasis	6.37E-03
100	GO:0052543: callose deposition in cell wall	6.37E-03
101	GO:0048564: photosystem I assembly	6.37E-03
102	GO:0043562: cellular response to nitrogen levels	7.30E-03
103	GO:0015996: chlorophyll catabolic process	7.30E-03
104	GO:0019430: removal of superoxide radicals	7.30E-03
105	GO:0009416: response to light stimulus	7.52E-03
106	GO:0046685: response to arsenic-containing substance	8.29E-03
107	GO:0009821: alkaloid biosynthetic process	8.29E-03
108	GO:0090333: regulation of stomatal closure	8.29E-03
109	GO:0009813: flavonoid biosynthetic process	8.94E-03
110	GO:0051453: regulation of intracellular pH	9.31E-03
111	GO:0005982: starch metabolic process	9.31E-03
112	GO:0006779: porphyrin-containing compound biosynthetic process	9.31E-03
113	GO:0010380: regulation of chlorophyll biosynthetic process	9.31E-03
114	GO:0009641: shade avoidance	1.04E-02
115	GO:0006896: Golgi to vacuole transport	1.04E-02
116	GO:0006782: protoporphyrinogen IX biosynthetic process	1.04E-02
117	GO:0015770: sucrose transport	1.15E-02
118	GO:0006879: cellular iron ion homeostasis	1.15E-02
119	GO:0006415: translational termination	1.15E-02
120	GO:0009684: indoleacetic acid biosynthetic process	1.15E-02
121	GO:0019684: photosynthesis, light reaction	1.15E-02
122	GO:0009773: photosynthetic electron transport in photosystem I	1.15E-02
123	GO:0006790: sulfur compound metabolic process	1.27E-02
124	GO:0016024: CDP-diacylglycerol biosynthetic process	1.27E-02
125	GO:0009767: photosynthetic electron transport chain	1.39E-02
126	GO:0010588: cotyledon vascular tissue pattern formation	1.39E-02
127	GO:0030048: actin filament-based movement	1.39E-02
128	GO:0051707: response to other organism	1.40E-02
129	GO:0007015: actin filament organization	1.51E-02
130	GO:0010223: secondary shoot formation	1.51E-02
131	GO:0048467: gynoecium development	1.51E-02
132	GO:0010143: cutin biosynthetic process	1.51E-02
133	GO:0006855: drug transmembrane transport	1.63E-02
134	GO:0046854: phosphatidylinositol phosphorylation	1.64E-02
135	GO:0019853: L-ascorbic acid biosynthetic process	1.64E-02
136	GO:0009901: anther dehiscence	1.64E-02
137	GO:0006636: unsaturated fatty acid biosynthetic process	1.77E-02
138	GO:0006364: rRNA processing	1.89E-02
139	GO:0005992: trehalose biosynthetic process	1.90E-02
140	GO:0080147: root hair cell development	1.90E-02
141	GO:0009768: photosynthesis, light harvesting in photosystem I	2.04E-02
142	GO:0016114: terpenoid biosynthetic process	2.18E-02
143	GO:0019915: lipid storage	2.18E-02
144	GO:0009269: response to desiccation	2.18E-02
145	GO:0048367: shoot system development	2.31E-02
146	GO:0030433: ubiquitin-dependent ERAD pathway	2.33E-02
147	GO:0006730: one-carbon metabolic process	2.33E-02
148	GO:0019748: secondary metabolic process	2.33E-02
149	GO:0016226: iron-sulfur cluster assembly	2.33E-02
150	GO:0006012: galactose metabolic process	2.48E-02
151	GO:0071215: cellular response to abscisic acid stimulus	2.48E-02
152	GO:0009686: gibberellin biosynthetic process	2.48E-02
153	GO:0009306: protein secretion	2.63E-02
154	GO:0016117: carotenoid biosynthetic process	2.79E-02
155	GO:0015979: photosynthesis	2.79E-02
156	GO:0042147: retrograde transport, endosome to Golgi	2.79E-02
157	GO:0080022: primary root development	2.95E-02
158	GO:0010087: phloem or xylem histogenesis	2.95E-02
159	GO:0006662: glycerol ether metabolic process	3.11E-02
160	GO:0010197: polar nucleus fusion	3.11E-02
161	GO:0010182: sugar mediated signaling pathway	3.11E-02
162	GO:0009741: response to brassinosteroid	3.11E-02
163	GO:0010268: brassinosteroid homeostasis	3.11E-02
164	GO:0009958: positive gravitropism	3.11E-02
165	GO:0006885: regulation of pH	3.11E-02
166	GO:0006520: cellular amino acid metabolic process	3.11E-02
167	GO:0071472: cellular response to salt stress	3.11E-02
168	GO:0006814: sodium ion transport	3.27E-02
169	GO:0009646: response to absence of light	3.27E-02
170	GO:0008654: phospholipid biosynthetic process	3.44E-02
171	GO:0009851: auxin biosynthetic process	3.44E-02
172	GO:0006623: protein targeting to vacuole	3.44E-02
173	GO:0048825: cotyledon development	3.44E-02
174	GO:0009058: biosynthetic process	3.55E-02
175	GO:0006891: intra-Golgi vesicle-mediated transport	3.61E-02
176	GO:0016132: brassinosteroid biosynthetic process	3.61E-02
177	GO:0071554: cell wall organization or biogenesis	3.61E-02
178	GO:0009630: gravitropism	3.78E-02
179	GO:0009790: embryo development	3.92E-02
180	GO:0009567: double fertilization forming a zygote and endosperm	4.14E-02
181	GO:0016125: sterol metabolic process	4.14E-02
182	GO:0009793: embryo development ending in seed dormancy	4.22E-02
183	GO:0006413: translational initiation	4.32E-02
184	GO:0016126: sterol biosynthetic process	4.69E-02
185	GO:0009607: response to biotic stimulus	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
2	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
3	GO:0004823: leucine-tRNA ligase activity	0.00E+00
4	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
5	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
6	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
7	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
8	GO:0090711: FMN hydrolase activity	0.00E+00
9	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
10	GO:0002161: aminoacyl-tRNA editing activity	2.02E-05
11	GO:0009011: starch synthase activity	7.90E-05
12	GO:0034256: chlorophyll(ide) b reductase activity	3.57E-04
13	GO:0042586: peptide deformylase activity	3.57E-04
14	GO:0005080: protein kinase C binding	3.57E-04
15	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.57E-04
16	GO:0045486: naringenin 3-dioxygenase activity	3.57E-04
17	GO:1905201: gibberellin transmembrane transporter activity	3.57E-04
18	GO:0051777: ent-kaurenoate oxidase activity	3.57E-04
19	GO:0004856: xylulokinase activity	3.57E-04
20	GO:0004033: aldo-keto reductase (NADP) activity	3.92E-04
21	GO:0004512: inositol-3-phosphate synthase activity	7.77E-04
22	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	7.77E-04
23	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	7.77E-04
24	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.77E-04
25	GO:0004617: phosphoglycerate dehydrogenase activity	7.77E-04
26	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	7.77E-04
27	GO:0052832: inositol monophosphate 3-phosphatase activity	7.77E-04
28	GO:0033201: alpha-1,4-glucan synthase activity	7.77E-04
29	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	7.77E-04
30	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	7.77E-04
31	GO:0008934: inositol monophosphate 1-phosphatase activity	7.77E-04
32	GO:0019172: glyoxalase III activity	7.77E-04
33	GO:0019156: isoamylase activity	7.77E-04
34	GO:0052833: inositol monophosphate 4-phosphatase activity	7.77E-04
35	GO:0015386: potassium:proton antiporter activity	9.13E-04
36	GO:0004751: ribose-5-phosphate isomerase activity	1.26E-03
37	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.26E-03
38	GO:0070402: NADPH binding	1.26E-03
39	GO:0008864: formyltetrahydrofolate deformylase activity	1.26E-03
40	GO:0004373: glycogen (starch) synthase activity	1.26E-03
41	GO:0004848: ureidoglycolate hydrolase activity	1.26E-03
42	GO:0004148: dihydrolipoyl dehydrogenase activity	1.26E-03
43	GO:0022890: inorganic cation transmembrane transporter activity	1.81E-03
44	GO:0016851: magnesium chelatase activity	1.81E-03
45	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.81E-03
46	GO:0003999: adenine phosphoribosyltransferase activity	1.81E-03
47	GO:0016149: translation release factor activity, codon specific	1.81E-03
48	GO:0016279: protein-lysine N-methyltransferase activity	2.44E-03
49	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.44E-03
50	GO:0004045: aminoacyl-tRNA hydrolase activity	2.44E-03
51	GO:0080032: methyl jasmonate esterase activity	2.44E-03
52	GO:0045430: chalcone isomerase activity	2.44E-03
53	GO:0016846: carbon-sulfur lyase activity	3.11E-03
54	GO:0005275: amine transmembrane transporter activity	3.11E-03
55	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.11E-03
56	GO:0004812: aminoacyl-tRNA ligase activity	3.13E-03
57	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.85E-03
58	GO:0004784: superoxide dismutase activity	3.85E-03
59	GO:0015081: sodium ion transmembrane transporter activity	3.85E-03
60	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.85E-03
61	GO:0080030: methyl indole-3-acetate esterase activity	3.85E-03
62	GO:0004556: alpha-amylase activity	3.85E-03
63	GO:0004462: lactoylglutathione lyase activity	3.85E-03
64	GO:0016788: hydrolase activity, acting on ester bonds	4.34E-03
65	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.64E-03
66	GO:0008195: phosphatidate phosphatase activity	4.64E-03
67	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.64E-03
68	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.64E-03
69	GO:0016791: phosphatase activity	5.46E-03
70	GO:0019843: rRNA binding	6.85E-03
71	GO:0008135: translation factor activity, RNA binding	7.30E-03
72	GO:0102483: scopolin beta-glucosidase activity	7.67E-03
73	GO:0003747: translation release factor activity	8.29E-03
74	GO:0015238: drug transmembrane transporter activity	8.94E-03
75	GO:0016844: strictosidine synthase activity	9.31E-03
76	GO:0005381: iron ion transmembrane transporter activity	9.31E-03
77	GO:0003993: acid phosphatase activity	1.13E-02
78	GO:0008559: xenobiotic-transporting ATPase activity	1.15E-02
79	GO:0047372: acylglycerol lipase activity	1.15E-02
80	GO:0008515: sucrose transmembrane transporter activity	1.15E-02
81	GO:0008422: beta-glucosidase activity	1.18E-02
82	GO:0000049: tRNA binding	1.27E-02
83	GO:0008378: galactosyltransferase activity	1.27E-02
84	GO:0004089: carbonate dehydratase activity	1.39E-02
85	GO:0031072: heat shock protein binding	1.39E-02
86	GO:0003725: double-stranded RNA binding	1.39E-02
87	GO:0004022: alcohol dehydrogenase (NAD) activity	1.39E-02
88	GO:0016787: hydrolase activity	1.46E-02
89	GO:0016491: oxidoreductase activity	1.48E-02
90	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.51E-02
91	GO:0003774: motor activity	1.51E-02
92	GO:0043621: protein self-association	1.51E-02
93	GO:0051119: sugar transmembrane transporter activity	1.64E-02
94	GO:0031409: pigment binding	1.77E-02
95	GO:0005525: GTP binding	1.78E-02
96	GO:0004672: protein kinase activity	1.82E-02
97	GO:0051536: iron-sulfur cluster binding	1.90E-02
98	GO:0031418: L-ascorbic acid binding	1.90E-02
99	GO:0005528: FK506 binding	1.90E-02
100	GO:0015079: potassium ion transmembrane transporter activity	2.04E-02
101	GO:0003723: RNA binding	2.38E-02
102	GO:0003727: single-stranded RNA binding	2.63E-02
103	GO:0047134: protein-disulfide reductase activity	2.79E-02
104	GO:0003824: catalytic activity	2.95E-02
105	GO:0005215: transporter activity	2.99E-02
106	GO:0003713: transcription coactivator activity	3.11E-02
107	GO:0004791: thioredoxin-disulfide reductase activity	3.27E-02
108	GO:0015299: solute:proton antiporter activity	3.27E-02
109	GO:0048038: quinone binding	3.61E-02
110	GO:0015385: sodium:proton antiporter activity	3.96E-02
111	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.96E-02
112	GO:0008565: protein transporter activity	4.02E-02
113	GO:0008237: metallopeptidase activity	4.32E-02
114	GO:0015297: antiporter activity	4.42E-02
115	GO:0016597: amino acid binding	4.50E-02
116	GO:0016413: O-acetyltransferase activity	4.50E-02
117	GO:0016168: chlorophyll binding	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009507: chloroplast	9.14E-23
3	GO:0009570: chloroplast stroma	1.53E-09
4	GO:0009535: chloroplast thylakoid membrane	1.62E-08
5	GO:0033281: TAT protein transport complex	2.02E-05
6	GO:0031969: chloroplast membrane	5.31E-05
7	GO:0005787: signal peptidase complex	3.57E-04
8	GO:0009344: nitrite reductase complex [NAD(P)H]	3.57E-04
9	GO:0031361: integral component of thylakoid membrane	3.57E-04
10	GO:0009941: chloroplast envelope	4.17E-04
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.76E-04
12	GO:0010007: magnesium chelatase complex	1.26E-03
13	GO:0009543: chloroplast thylakoid lumen	1.32E-03
14	GO:0030095: chloroplast photosystem II	1.33E-03
15	GO:0030658: transport vesicle membrane	1.81E-03
16	GO:0071782: endoplasmic reticulum tubular network	1.81E-03
17	GO:0042646: plastid nucleoid	1.81E-03
18	GO:0031977: thylakoid lumen	2.02E-03
19	GO:0009654: photosystem II oxygen evolving complex	2.03E-03
20	GO:0009517: PSII associated light-harvesting complex II	2.44E-03
21	GO:0009534: chloroplast thylakoid	3.14E-03
22	GO:0009522: photosystem I	3.92E-03
23	GO:0019898: extrinsic component of membrane	4.20E-03
24	GO:0012507: ER to Golgi transport vesicle membrane	6.37E-03
25	GO:0009501: amyloplast	6.37E-03
26	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	6.37E-03
27	GO:0031982: vesicle	6.37E-03
28	GO:0005789: endoplasmic reticulum membrane	7.12E-03
29	GO:0005763: mitochondrial small ribosomal subunit	8.29E-03
30	GO:0042644: chloroplast nucleoid	8.29E-03
31	GO:0009579: thylakoid	1.03E-02
32	GO:0016459: myosin complex	1.04E-02
33	GO:0032040: small-subunit processome	1.27E-02
34	GO:0030076: light-harvesting complex	1.64E-02
35	GO:0015935: small ribosomal subunit	2.18E-02
36	GO:0009706: chloroplast inner membrane	2.69E-02
37	GO:0010287: plastoglobule	3.19E-02
38	GO:0009523: photosystem II	3.44E-02
39	GO:0005623: cell	3.46E-02
40	GO:0005783: endoplasmic reticulum	3.77E-02
41	GO:0009295: nucleoid	4.32E-02
42	GO:0009705: plant-type vacuole membrane	4.63E-02
43	GO:0030529: intracellular ribonucleoprotein complex	4.69E-02