Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G54180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006982: response to lipid hydroperoxide0.00E+00
2GO:0010335: response to non-ionic osmotic stress0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
5GO:0090279: regulation of calcium ion import0.00E+00
6GO:0046471: phosphatidylglycerol metabolic process0.00E+00
7GO:0071474: cellular hyperosmotic response0.00E+00
8GO:0034337: RNA folding0.00E+00
9GO:0015995: chlorophyll biosynthetic process9.21E-10
10GO:0055114: oxidation-reduction process1.91E-06
11GO:0010207: photosystem II assembly5.63E-06
12GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.99E-05
13GO:0015994: chlorophyll metabolic process1.05E-04
14GO:0006094: gluconeogenesis1.17E-04
15GO:0010027: thylakoid membrane organization1.46E-04
16GO:0010362: negative regulation of anion channel activity by blue light4.23E-04
17GO:0015969: guanosine tetraphosphate metabolic process4.23E-04
18GO:0046467: membrane lipid biosynthetic process4.23E-04
19GO:1902478: negative regulation of defense response to bacterium, incompatible interaction4.23E-04
20GO:0031426: polycistronic mRNA processing4.23E-04
21GO:0043953: protein transport by the Tat complex4.23E-04
22GO:0010426: DNA methylation on cytosine within a CHH sequence4.23E-04
23GO:0071277: cellular response to calcium ion4.23E-04
24GO:0000481: maturation of 5S rRNA4.23E-04
25GO:0015801: aromatic amino acid transport4.23E-04
26GO:0065002: intracellular protein transmembrane transport4.23E-04
27GO:0043686: co-translational protein modification4.23E-04
28GO:0043087: regulation of GTPase activity4.23E-04
29GO:0071461: cellular response to redox state4.23E-04
30GO:0046167: glycerol-3-phosphate biosynthetic process4.23E-04
31GO:0043007: maintenance of rDNA4.23E-04
32GO:1902458: positive regulation of stomatal opening4.23E-04
33GO:0009704: de-etiolation5.03E-04
34GO:0016559: peroxisome fission5.03E-04
35GO:0015979: photosynthesis6.91E-04
36GO:0042819: vitamin B6 biosynthetic process9.16E-04
37GO:0080005: photosystem stoichiometry adjustment9.16E-04
38GO:0010541: acropetal auxin transport9.16E-04
39GO:0006650: glycerophospholipid metabolic process9.16E-04
40GO:0008616: queuosine biosynthetic process9.16E-04
41GO:0010155: regulation of proton transport9.16E-04
42GO:0006729: tetrahydrobiopterin biosynthetic process9.16E-04
43GO:1903426: regulation of reactive oxygen species biosynthetic process9.16E-04
44GO:0015790: UDP-xylose transport9.16E-04
45GO:0030388: fructose 1,6-bisphosphate metabolic process9.16E-04
46GO:0051262: protein tetramerization9.16E-04
47GO:0009773: photosynthetic electron transport in photosystem I1.16E-03
48GO:0016024: CDP-diacylglycerol biosynthetic process1.33E-03
49GO:0006810: transport1.49E-03
50GO:0006000: fructose metabolic process1.49E-03
51GO:0046168: glycerol-3-phosphate catabolic process1.49E-03
52GO:0034051: negative regulation of plant-type hypersensitive response1.49E-03
53GO:0010160: formation of animal organ boundary1.49E-03
54GO:0044375: regulation of peroxisome size1.49E-03
55GO:0046621: negative regulation of organ growth1.49E-03
56GO:0007568: aging1.99E-03
57GO:0006636: unsaturated fatty acid biosynthetic process2.13E-03
58GO:0009152: purine ribonucleotide biosynthetic process2.15E-03
59GO:0046653: tetrahydrofolate metabolic process2.15E-03
60GO:0010239: chloroplast mRNA processing2.15E-03
61GO:0043481: anthocyanin accumulation in tissues in response to UV light2.15E-03
62GO:0009052: pentose-phosphate shunt, non-oxidative branch2.15E-03
63GO:0033014: tetrapyrrole biosynthetic process2.15E-03
64GO:0006072: glycerol-3-phosphate metabolic process2.15E-03
65GO:0008615: pyridoxine biosynthetic process2.15E-03
66GO:0042823: pyridoxal phosphate biosynthetic process2.15E-03
67GO:2001141: regulation of RNA biosynthetic process2.15E-03
68GO:0044550: secondary metabolite biosynthetic process2.51E-03
69GO:0010600: regulation of auxin biosynthetic process2.89E-03
70GO:0006465: signal peptide processing3.71E-03
71GO:0000304: response to singlet oxygen3.71E-03
72GO:0080110: sporopollenin biosynthetic process3.71E-03
73GO:0019722: calcium-mediated signaling3.71E-03
74GO:0006564: L-serine biosynthetic process3.71E-03
75GO:0009904: chloroplast accumulation movement3.71E-03
76GO:0045038: protein import into chloroplast thylakoid membrane3.71E-03
77GO:0031365: N-terminal protein amino acid modification3.71E-03
78GO:0009107: lipoate biosynthetic process3.71E-03
79GO:0006655: phosphatidylglycerol biosynthetic process4.59E-03
80GO:0060918: auxin transport4.59E-03
81GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.59E-03
82GO:0042549: photosystem II stabilization4.59E-03
83GO:0006520: cellular amino acid metabolic process4.69E-03
84GO:0009791: post-embryonic development5.42E-03
85GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.53E-03
86GO:1901259: chloroplast rRNA processing5.53E-03
87GO:0000054: ribosomal subunit export from nucleus5.53E-03
88GO:0009903: chloroplast avoidance movement5.53E-03
89GO:0010189: vitamin E biosynthetic process5.53E-03
90GO:0009658: chloroplast organization6.21E-03
91GO:0048437: floral organ development6.54E-03
92GO:1900057: positive regulation of leaf senescence6.54E-03
93GO:0050829: defense response to Gram-negative bacterium6.54E-03
94GO:0006400: tRNA modification6.54E-03
95GO:0010161: red light signaling pathway6.54E-03
96GO:0007267: cell-cell signaling7.48E-03
97GO:0007155: cell adhesion7.60E-03
98GO:0010928: regulation of auxin mediated signaling pathway7.60E-03
99GO:0009690: cytokinin metabolic process7.60E-03
100GO:0032508: DNA duplex unwinding7.60E-03
101GO:2000070: regulation of response to water deprivation7.60E-03
102GO:0009932: cell tip growth8.73E-03
103GO:0006002: fructose 6-phosphate metabolic process8.73E-03
104GO:0071482: cellular response to light stimulus8.73E-03
105GO:0015996: chlorophyll catabolic process8.73E-03
106GO:0007186: G-protein coupled receptor signaling pathway8.73E-03
107GO:0009657: plastid organization8.73E-03
108GO:0006526: arginine biosynthetic process8.73E-03
109GO:0009821: alkaloid biosynthetic process9.92E-03
110GO:0051865: protein autoubiquitination9.92E-03
111GO:0090305: nucleic acid phosphodiester bond hydrolysis9.92E-03
112GO:0006098: pentose-phosphate shunt9.92E-03
113GO:0010206: photosystem II repair9.92E-03
114GO:0090333: regulation of stomatal closure9.92E-03
115GO:0010411: xyloglucan metabolic process9.92E-03
116GO:0048507: meristem development9.92E-03
117GO:0006783: heme biosynthetic process9.92E-03
118GO:0009638: phototropism1.12E-02
119GO:0006779: porphyrin-containing compound biosynthetic process1.12E-02
120GO:0006811: ion transport1.21E-02
121GO:0005975: carbohydrate metabolic process1.22E-02
122GO:0006535: cysteine biosynthetic process from serine1.24E-02
123GO:0043069: negative regulation of programmed cell death1.24E-02
124GO:0006352: DNA-templated transcription, initiation1.38E-02
125GO:0006415: translational termination1.38E-02
126GO:0016051: carbohydrate biosynthetic process1.40E-02
127GO:0009637: response to blue light1.40E-02
128GO:0034599: cellular response to oxidative stress1.46E-02
129GO:0032259: methylation1.46E-02
130GO:0008361: regulation of cell size1.52E-02
131GO:0045037: protein import into chloroplast stroma1.52E-02
132GO:0005986: sucrose biosynthetic process1.66E-02
133GO:0006631: fatty acid metabolic process1.66E-02
134GO:0030048: actin filament-based movement1.66E-02
135GO:0009785: blue light signaling pathway1.66E-02
136GO:0018107: peptidyl-threonine phosphorylation1.66E-02
137GO:0009718: anthocyanin-containing compound biosynthetic process1.66E-02
138GO:0009725: response to hormone1.66E-02
139GO:0009767: photosynthetic electron transport chain1.66E-02
140GO:0034605: cellular response to heat1.81E-02
141GO:0010143: cutin biosynthetic process1.81E-02
142GO:0010020: chloroplast fission1.81E-02
143GO:0019253: reductive pentose-phosphate cycle1.81E-02
144GO:0010540: basipetal auxin transport1.81E-02
145GO:0009266: response to temperature stimulus1.81E-02
146GO:0042546: cell wall biogenesis1.88E-02
147GO:0007031: peroxisome organization1.96E-02
148GO:0042343: indole glucosinolate metabolic process1.96E-02
149GO:0019762: glucosinolate catabolic process2.12E-02
150GO:0019344: cysteine biosynthetic process2.29E-02
151GO:0006289: nucleotide-excision repair2.29E-02
152GO:0042254: ribosome biogenesis2.54E-02
153GO:0006857: oligopeptide transport2.61E-02
154GO:0061077: chaperone-mediated protein folding2.62E-02
155GO:0006306: DNA methylation2.62E-02
156GO:0031408: oxylipin biosynthetic process2.62E-02
157GO:0003333: amino acid transmembrane transport2.62E-02
158GO:0048511: rhythmic process2.62E-02
159GO:0098542: defense response to other organism2.62E-02
160GO:0010017: red or far-red light signaling pathway2.80E-02
161GO:0016226: iron-sulfur cluster assembly2.80E-02
162GO:0030433: ubiquitin-dependent ERAD pathway2.80E-02
163GO:0080092: regulation of pollen tube growth2.80E-02
164GO:0006096: glycolytic process2.88E-02
165GO:0010584: pollen exine formation3.16E-02
166GO:0006817: phosphate ion transport3.16E-02
167GO:0048443: stamen development3.16E-02
168GO:0009561: megagametogenesis3.16E-02
169GO:0009306: protein secretion3.16E-02
170GO:0009735: response to cytokinin3.19E-02
171GO:0042335: cuticle development3.54E-02
172GO:0006606: protein import into nucleus3.54E-02
173GO:0009958: positive gravitropism3.73E-02
174GO:0045489: pectin biosynthetic process3.73E-02
175GO:0010182: sugar mediated signaling pathway3.73E-02
176GO:0009741: response to brassinosteroid3.73E-02
177GO:0009646: response to absence of light3.93E-02
178GO:0019252: starch biosynthetic process4.13E-02
179GO:0008654: phospholipid biosynthetic process4.13E-02
180GO:0000302: response to reactive oxygen species4.33E-02
181GO:0007264: small GTPase mediated signal transduction4.54E-02
182GO:0032502: developmental process4.54E-02
183GO:0009058: biosynthetic process4.56E-02
184GO:0042744: hydrogen peroxide catabolic process4.92E-02
185GO:0009567: double fertilization forming a zygote and endosperm4.96E-02
186GO:0009639: response to red or far red light4.96E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
3GO:0045550: geranylgeranyl reductase activity0.00E+00
4GO:0050613: delta14-sterol reductase activity0.00E+00
5GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
6GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
7GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
8GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
9GO:0016491: oxidoreductase activity5.04E-06
10GO:0018708: thiol S-methyltransferase activity7.99E-06
11GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor5.99E-05
12GO:0016851: magnesium chelatase activity5.99E-05
13GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.05E-04
14GO:0004332: fructose-bisphosphate aldolase activity2.32E-04
15GO:0000293: ferric-chelate reductase activity2.32E-04
16GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.32E-04
17GO:0005227: calcium activated cation channel activity4.23E-04
18GO:0080132: fatty acid alpha-hydroxylase activity4.23E-04
19GO:0004325: ferrochelatase activity4.23E-04
20GO:0042586: peptide deformylase activity4.23E-04
21GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.23E-04
22GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.23E-04
23GO:0048038: quinone binding7.45E-04
24GO:0015173: aromatic amino acid transmembrane transporter activity9.16E-04
25GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.16E-04
26GO:0008479: queuine tRNA-ribosyltransferase activity9.16E-04
27GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity9.16E-04
28GO:0043024: ribosomal small subunit binding9.16E-04
29GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity9.16E-04
30GO:0005464: UDP-xylose transmembrane transporter activity9.16E-04
31GO:0019172: glyoxalase III activity9.16E-04
32GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity9.16E-04
33GO:0008728: GTP diphosphokinase activity9.16E-04
34GO:0050017: L-3-cyanoalanine synthase activity9.16E-04
35GO:0047746: chlorophyllase activity9.16E-04
36GO:0042389: omega-3 fatty acid desaturase activity9.16E-04
37GO:0009977: proton motive force dependent protein transmembrane transporter activity9.16E-04
38GO:0004617: phosphoglycerate dehydrogenase activity9.16E-04
39GO:0010277: chlorophyllide a oxygenase [overall] activity1.49E-03
40GO:0005504: fatty acid binding1.49E-03
41GO:0016992: lipoate synthase activity1.49E-03
42GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.49E-03
43GO:0004751: ribose-5-phosphate isomerase activity1.49E-03
44GO:0030267: glyoxylate reductase (NADP) activity1.49E-03
45GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.49E-03
46GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.49E-03
47GO:0008864: formyltetrahydrofolate deformylase activity1.49E-03
48GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.49E-03
49GO:0004565: beta-galactosidase activity1.51E-03
50GO:0031072: heat shock protein binding1.51E-03
51GO:0019843: rRNA binding1.95E-03
52GO:0048027: mRNA 5'-UTR binding2.15E-03
53GO:0009882: blue light photoreceptor activity2.15E-03
54GO:0005528: FK506 binding2.36E-03
55GO:0016987: sigma factor activity2.89E-03
56GO:0070628: proteasome binding2.89E-03
57GO:0045430: chalcone isomerase activity2.89E-03
58GO:0001053: plastid sigma factor activity2.89E-03
59GO:0005275: amine transmembrane transporter activity3.71E-03
60GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.77E-03
61GO:0051287: NAD binding3.95E-03
62GO:0031593: polyubiquitin binding4.59E-03
63GO:0004130: cytochrome-c peroxidase activity4.59E-03
64GO:0035673: oligopeptide transmembrane transporter activity4.59E-03
65GO:0004462: lactoylglutathione lyase activity4.59E-03
66GO:0042578: phosphoric ester hydrolase activity4.59E-03
67GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.59E-03
68GO:0042802: identical protein binding4.60E-03
69GO:0005506: iron ion binding4.80E-03
70GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.53E-03
71GO:0005261: cation channel activity5.53E-03
72GO:0003886: DNA (cytosine-5-)-methyltransferase activity5.53E-03
73GO:0004124: cysteine synthase activity5.53E-03
74GO:0016762: xyloglucan:xyloglucosyl transferase activity5.80E-03
75GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.73E-03
76GO:0008135: translation factor activity, RNA binding8.73E-03
77GO:0005525: GTP binding9.52E-03
78GO:0071949: FAD binding9.92E-03
79GO:0016798: hydrolase activity, acting on glycosyl bonds9.92E-03
80GO:0016844: strictosidine synthase activity1.12E-02
81GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.27E-02
82GO:0005089: Rho guanyl-nucleotide exchange factor activity1.38E-02
83GO:0003746: translation elongation factor activity1.40E-02
84GO:0015198: oligopeptide transporter activity1.52E-02
85GO:0010329: auxin efflux transmembrane transporter activity1.66E-02
86GO:0005315: inorganic phosphate transmembrane transporter activity1.66E-02
87GO:0000155: phosphorelay sensor kinase activity1.66E-02
88GO:0031624: ubiquitin conjugating enzyme binding1.81E-02
89GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.81E-02
90GO:0008266: poly(U) RNA binding1.81E-02
91GO:0003774: motor activity1.81E-02
92GO:0035091: phosphatidylinositol binding1.95E-02
93GO:0051537: 2 iron, 2 sulfur cluster binding1.95E-02
94GO:0043130: ubiquitin binding2.29E-02
95GO:0051536: iron-sulfur cluster binding2.29E-02
96GO:0008168: methyltransferase activity2.37E-02
97GO:0016787: hydrolase activity2.49E-02
98GO:0016788: hydrolase activity, acting on ester bonds2.54E-02
99GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.80E-02
100GO:0016887: ATPase activity2.98E-02
101GO:0003727: single-stranded RNA binding3.16E-02
102GO:0020037: heme binding3.36E-02
103GO:0051082: unfolded protein binding3.47E-02
104GO:0052689: carboxylic ester hydrolase activity3.68E-02
105GO:0050662: coenzyme binding3.93E-02
106GO:0010181: FMN binding3.93E-02
107GO:0004872: receptor activity4.13E-02
108GO:0004518: nuclease activity4.54E-02
109GO:0005215: transporter activity4.55E-02
110GO:0030170: pyridoxal phosphate binding4.80E-02
111GO:0003684: damaged DNA binding4.96E-02
112GO:0016791: phosphatase activity4.96E-02
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Gene type



Gene DE type