Gene: AT5G48900
     

Gene description


TAIR ID: AT5G48900

Short description: Pectin lyase-like superfamily protein

Pathogen responsiveness: 1.16

General responsiveness: -0.27

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


pectin catabolic process


GO cellular component


extracellular region


GO molecular function


pectate lyase activity, metal ion binding, lyase activity


Protein domain


PfamPF00544, Pectate lyase
SMARTSM00656, Amb_all

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT4G23810, AT2G43010, AT4G36990

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


37 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE11807Col, WT, water 4 hCol, WT, Flg22 4 h-1.842.53E-02
GSE11807Col, erf104 ko, water 4 hCol, erf104 ko, Flg22 4 h-1.873.58E-02
GSE11807Col, mpk6 ko, water 4 hCol, mpk6 ko, Flg22 4 h-2.013.22E-02
GSE12856Col, WT, controlCol, WT, Bg h-1.871.58E-05
GSE12856Col, ataf1, controlCol, ataf1, Bg h-1.702.91E-05
GSE13739Col, WT, control 0 hCol, WT, G.orontii 5 d-1.741.61E-03
GSE13739Col, WT, control 7 dCol, WT, G.orontii 7 d-1.502.83E-03
GSE13739Col, eds, control 7 dCol, eds, G.orontii 7 d-2.001.73E-04
GSE17464Laer, controlLaer, PstDC3000 12 h1.561.04E-02
GSE17464Penta, controlPenta, PstDC3000 12 h2.627.83E-06
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h-3.004.03E-05
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h-3.289.03E-06
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h-3.082.55E-05
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-3.783.11E-12
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-4.103.36E-06
GSE37269Ler0, WT, controlLer0, WT, TEV 21 d-2.621.88E-03
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.911.50E-02
GSE37269Wt1, WT, controlWt1, WT, TEV 21 d-2.013.98E-02
GSE40544Col, WT, controlCol, WT, PstDC3000 AvrRpt2-3.908.27E-07
GSE40544Col, WT, controlCol, WT, PstDC3000 EV-3.876.37E-07
GSE40544Col, Sid2, controlCol, Sid2, PstDC3000 AvrRpt2-3.996.29E-07
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-3.922.29E-12
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h-1.862.25E-07
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-3.511.58E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-3.922.60E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-3.234.93E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-4.179.07E-13
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h-1.551.29E-08
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-2.602.48E-12
GSE50526Col, WT, mock 24 hCol, WT, A. brassicicola 24 h-3.624.42E-05
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h-1.565.53E-07
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-3.543.57E-05
GSE5520Col, WT, control 10 hCol, WT, Cor- hrpS- 10 h-2.601.07E-02
GSE5520Col, WT, control 24 hCol, WT, PstDC3000 24 h-2.258.73E-03
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-3.388.19E-04
GSE6556Col, WT, controlCol, WT, PstDC3000 AvrRpt2 48 h-1.651.52E-03
GSE6556Col, gh3.5, controlCol, gh3.5, PstDC3000 AvrRpt2 48 h-3.618.05E-07






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