Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G48900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090071: negative regulation of ribosome biogenesis0.00E+00
2GO:0016553: base conversion or substitution editing0.00E+00
3GO:0042493: response to drug0.00E+00
4GO:0042371: vitamin K biosynthetic process0.00E+00
5GO:1905499: trichome papilla formation0.00E+00
6GO:0002184: cytoplasmic translational termination0.00E+00
7GO:0045014: negative regulation of transcription by glucose0.00E+00
8GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
9GO:0006412: translation3.13E-12
10GO:0042254: ribosome biogenesis3.90E-10
11GO:0015995: chlorophyll biosynthetic process5.68E-09
12GO:0032544: plastid translation1.61E-07
13GO:0015979: photosynthesis4.47E-07
14GO:0009735: response to cytokinin1.08E-06
15GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.02E-05
16GO:0090391: granum assembly1.57E-05
17GO:0010206: photosystem II repair1.73E-05
18GO:0009828: plant-type cell wall loosening4.55E-05
19GO:0006833: water transport1.02E-04
20GO:0009826: unidimensional cell growth1.10E-04
21GO:0010196: nonphotochemical quenching2.54E-04
22GO:0009772: photosynthetic electron transport in photosystem II2.54E-04
23GO:0042335: cuticle development2.86E-04
24GO:0034220: ion transmembrane transport2.86E-04
25GO:0043489: RNA stabilization3.11E-04
26GO:0042759: long-chain fatty acid biosynthetic process3.11E-04
27GO:0071588: hydrogen peroxide mediated signaling pathway3.11E-04
28GO:0060627: regulation of vesicle-mediated transport3.11E-04
29GO:0009958: positive gravitropism3.16E-04
30GO:0009664: plant-type cell wall organization3.60E-04
31GO:0006949: syncytium formation6.53E-04
32GO:0010027: thylakoid membrane organization6.71E-04
33GO:0043255: regulation of carbohydrate biosynthetic process6.81E-04
34GO:0010115: regulation of abscisic acid biosynthetic process6.81E-04
35GO:0010541: acropetal auxin transport6.81E-04
36GO:0001736: establishment of planar polarity6.81E-04
37GO:0006568: tryptophan metabolic process6.81E-04
38GO:0009773: photosynthetic electron transport in photosystem I7.52E-04
39GO:0018119: peptidyl-cysteine S-nitrosylation7.52E-04
40GO:0016024: CDP-diacylglycerol biosynthetic process8.60E-04
41GO:0010143: cutin biosynthetic process1.09E-03
42GO:0010207: photosystem II assembly1.09E-03
43GO:0010160: formation of animal organ boundary1.10E-03
44GO:0015840: urea transport1.10E-03
45GO:0080055: low-affinity nitrate transport1.10E-03
46GO:0045493: xylan catabolic process1.10E-03
47GO:0009825: multidimensional cell growth1.22E-03
48GO:0010025: wax biosynthetic process1.36E-03
49GO:0051017: actin filament bundle assembly1.50E-03
50GO:0006869: lipid transport1.56E-03
51GO:0080170: hydrogen peroxide transmembrane transport1.58E-03
52GO:0043481: anthocyanin accumulation in tissues in response to UV light1.58E-03
53GO:0009650: UV protection1.58E-03
54GO:1901332: negative regulation of lateral root development1.58E-03
55GO:0006168: adenine salvage1.58E-03
56GO:0006986: response to unfolded protein1.58E-03
57GO:0006166: purine ribonucleoside salvage1.58E-03
58GO:0051513: regulation of monopolar cell growth1.58E-03
59GO:0071484: cellular response to light intensity1.58E-03
60GO:0009102: biotin biosynthetic process1.58E-03
61GO:0051085: chaperone mediated protein folding requiring cofactor1.58E-03
62GO:0051639: actin filament network formation1.58E-03
63GO:0016042: lipid catabolic process1.82E-03
64GO:0030245: cellulose catabolic process1.99E-03
65GO:0022622: root system development2.12E-03
66GO:0030104: water homeostasis2.12E-03
67GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.12E-03
68GO:0051764: actin crosslink formation2.12E-03
69GO:0006183: GTP biosynthetic process2.12E-03
70GO:0048443: stamen development2.36E-03
71GO:0048359: mucilage metabolic process involved in seed coat development2.71E-03
72GO:0010236: plastoquinone biosynthetic process2.71E-03
73GO:0044209: AMP salvage2.71E-03
74GO:0006665: sphingolipid metabolic process2.71E-03
75GO:0009658: chloroplast organization3.09E-03
76GO:0006655: phosphatidylglycerol biosynthetic process3.35E-03
77GO:0060918: auxin transport3.35E-03
78GO:0010337: regulation of salicylic acid metabolic process3.35E-03
79GO:0035435: phosphate ion transmembrane transport3.35E-03
80GO:0006751: glutathione catabolic process3.35E-03
81GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.35E-03
82GO:0042372: phylloquinone biosynthetic process4.03E-03
83GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.03E-03
84GO:0017148: negative regulation of translation4.03E-03
85GO:0006694: steroid biosynthetic process4.03E-03
86GO:0010019: chloroplast-nucleus signaling pathway4.03E-03
87GO:1900057: positive regulation of leaf senescence4.76E-03
88GO:0032880: regulation of protein localization4.76E-03
89GO:0008610: lipid biosynthetic process5.53E-03
90GO:0048564: photosystem I assembly5.53E-03
91GO:0071555: cell wall organization5.80E-03
92GO:0009808: lignin metabolic process6.33E-03
93GO:0048589: developmental growth7.19E-03
94GO:0015780: nucleotide-sugar transport7.19E-03
95GO:0009733: response to auxin7.28E-03
96GO:0010311: lateral root formation7.29E-03
97GO:0048527: lateral root development8.02E-03
98GO:0009631: cold acclimation8.02E-03
99GO:0042761: very long-chain fatty acid biosynthetic process8.07E-03
100GO:0006779: porphyrin-containing compound biosynthetic process8.07E-03
101GO:0006782: protoporphyrinogen IX biosynthetic process9.00E-03
102GO:0006535: cysteine biosynthetic process from serine9.00E-03
103GO:0006032: chitin catabolic process9.00E-03
104GO:0048829: root cap development9.00E-03
105GO:0010215: cellulose microfibril organization9.00E-03
106GO:0048765: root hair cell differentiation9.96E-03
107GO:0010015: root morphogenesis9.96E-03
108GO:0030001: metal ion transport1.00E-02
109GO:0010152: pollen maturation1.10E-02
110GO:0008361: regulation of cell size1.10E-02
111GO:0009926: auxin polar transport1.14E-02
112GO:2000012: regulation of auxin polar transport1.20E-02
113GO:0006006: glucose metabolic process1.20E-02
114GO:0009718: anthocyanin-containing compound biosynthetic process1.20E-02
115GO:0009734: auxin-activated signaling pathway1.30E-02
116GO:0019253: reductive pentose-phosphate cycle1.31E-02
117GO:0010540: basipetal auxin transport1.31E-02
118GO:0005975: carbohydrate metabolic process1.31E-02
119GO:0010167: response to nitrate1.42E-02
120GO:0010053: root epidermal cell differentiation1.42E-02
121GO:0042538: hyperosmotic salinity response1.43E-02
122GO:0009809: lignin biosynthetic process1.54E-02
123GO:0000027: ribosomal large subunit assembly1.65E-02
124GO:0019344: cysteine biosynthetic process1.65E-02
125GO:0007017: microtubule-based process1.77E-02
126GO:0080167: response to karrikin1.83E-02
127GO:0009416: response to light stimulus1.84E-02
128GO:0003333: amino acid transmembrane transport1.89E-02
129GO:0016998: cell wall macromolecule catabolic process1.89E-02
130GO:0009411: response to UV2.14E-02
131GO:0009624: response to nematode2.19E-02
132GO:0010091: trichome branching2.27E-02
133GO:0006284: base-excision repair2.27E-02
134GO:0009742: brassinosteroid mediated signaling pathway2.32E-02
135GO:0008284: positive regulation of cell proliferation2.41E-02
136GO:0080022: primary root development2.55E-02
137GO:0000413: protein peptidyl-prolyl isomerization2.55E-02
138GO:0055085: transmembrane transport2.63E-02
139GO:0015986: ATP synthesis coupled proton transport2.83E-02
140GO:0000302: response to reactive oxygen species3.12E-02
141GO:0016132: brassinosteroid biosynthetic process3.12E-02
142GO:0009790: embryo development3.20E-02
143GO:0030163: protein catabolic process3.42E-02
144GO:0006633: fatty acid biosynthetic process3.45E-02
145GO:0009639: response to red or far red light3.58E-02
146GO:0009567: double fertilization forming a zygote and endosperm3.58E-02
147GO:0045490: pectin catabolic process3.78E-02
148GO:0051607: defense response to virus3.89E-02
149GO:0016126: sterol biosynthetic process4.05E-02
150GO:0007166: cell surface receptor signaling pathway4.32E-02
151GO:0009627: systemic acquired resistance4.38E-02
152GO:0010411: xyloglucan metabolic process4.55E-02
153GO:0016311: dephosphorylation4.72E-02
154GO:0009817: defense response to fungus, incompatible interaction4.89E-02
155GO:0030244: cellulose biosynthetic process4.89E-02
RankGO TermAdjusted P value
1GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
2GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
3GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
4GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
5GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
6GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
7GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
8GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
9GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
10GO:0050614: delta24-sterol reductase activity0.00E+00
11GO:0004076: biotin synthase activity0.00E+00
12GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
13GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
14GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
15GO:0019843: rRNA binding1.57E-16
16GO:0003735: structural constituent of ribosome1.74E-14
17GO:0016851: magnesium chelatase activity1.62E-07
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.05E-06
19GO:0005528: FK506 binding4.47E-06
20GO:0043023: ribosomal large subunit binding3.50E-05
21GO:0010011: auxin binding6.26E-05
22GO:0015250: water channel activity6.40E-05
23GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.43E-04
24GO:0052689: carboxylic ester hydrolase activity2.48E-04
25GO:0015200: methylammonium transmembrane transporter activity3.11E-04
26GO:0004163: diphosphomevalonate decarboxylase activity3.11E-04
27GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.11E-04
28GO:0004425: indole-3-glycerol-phosphate synthase activity3.11E-04
29GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.11E-04
30GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity6.81E-04
31GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.81E-04
32GO:0003839: gamma-glutamylcyclotransferase activity6.81E-04
33GO:0003938: IMP dehydrogenase activity6.81E-04
34GO:0016788: hydrolase activity, acting on ester bonds6.88E-04
35GO:0004565: beta-galactosidase activity9.73E-04
36GO:0008266: poly(U) RNA binding1.09E-03
37GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.10E-03
38GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.10E-03
39GO:0080054: low-affinity nitrate transmembrane transporter activity1.10E-03
40GO:0003999: adenine phosphoribosyltransferase activity1.58E-03
41GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.58E-03
42GO:0008097: 5S rRNA binding1.58E-03
43GO:0001872: (1->3)-beta-D-glucan binding1.58E-03
44GO:0010328: auxin influx transmembrane transporter activity2.12E-03
45GO:0052793: pectin acetylesterase activity2.12E-03
46GO:0009044: xylan 1,4-beta-xylosidase activity2.12E-03
47GO:0046556: alpha-L-arabinofuranosidase activity2.12E-03
48GO:0015204: urea transmembrane transporter activity2.12E-03
49GO:0004659: prenyltransferase activity2.12E-03
50GO:0016836: hydro-lyase activity2.12E-03
51GO:0008810: cellulase activity2.17E-03
52GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.50E-03
53GO:0004040: amidase activity2.71E-03
54GO:0008725: DNA-3-methyladenine glycosylase activity2.71E-03
55GO:0009922: fatty acid elongase activity2.71E-03
56GO:0004130: cytochrome-c peroxidase activity3.35E-03
57GO:0016688: L-ascorbate peroxidase activity3.35E-03
58GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.35E-03
59GO:0008519: ammonium transmembrane transporter activity3.35E-03
60GO:0008289: lipid binding3.43E-03
61GO:0004124: cysteine synthase activity4.03E-03
62GO:0051920: peroxiredoxin activity4.03E-03
63GO:0051015: actin filament binding4.19E-03
64GO:0052747: sinapyl alcohol dehydrogenase activity5.53E-03
65GO:0004714: transmembrane receptor protein tyrosine kinase activity5.53E-03
66GO:0016209: antioxidant activity5.53E-03
67GO:0004252: serine-type endopeptidase activity6.03E-03
68GO:0030247: polysaccharide binding6.26E-03
69GO:0008236: serine-type peptidase activity6.59E-03
70GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.19E-03
71GO:0004568: chitinase activity9.00E-03
72GO:0003993: acid phosphatase activity9.20E-03
73GO:0045551: cinnamyl-alcohol dehydrogenase activity1.10E-02
74GO:0008378: galactosyltransferase activity1.10E-02
75GO:0010329: auxin efflux transmembrane transporter activity1.20E-02
76GO:0031072: heat shock protein binding1.20E-02
77GO:0015114: phosphate ion transmembrane transporter activity1.20E-02
78GO:0008083: growth factor activity1.31E-02
79GO:0051087: chaperone binding1.77E-02
80GO:0004707: MAP kinase activity1.89E-02
81GO:0004650: polygalacturonase activity2.00E-02
82GO:0030570: pectate lyase activity2.14E-02
83GO:0051082: unfolded protein binding2.19E-02
84GO:0003756: protein disulfide isomerase activity2.27E-02
85GO:0008514: organic anion transmembrane transporter activity2.27E-02
86GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.68E-02
87GO:0016829: lyase activity2.97E-02
88GO:0003924: GTPase activity2.98E-02
89GO:0030170: pyridoxal phosphate binding3.05E-02
90GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.53E-02
91GO:0016791: phosphatase activity3.58E-02
92GO:0008483: transaminase activity3.73E-02
93GO:0005200: structural constituent of cytoskeleton3.73E-02
94GO:0016168: chlorophyll binding4.22E-02
95GO:0042802: identical protein binding4.79E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
4GO:0009930: longitudinal side of cell surface0.00E+00
5GO:0009570: chloroplast stroma5.11E-35
6GO:0009941: chloroplast envelope8.27E-24
7GO:0009507: chloroplast1.13E-22
8GO:0009579: thylakoid1.50E-22
9GO:0009534: chloroplast thylakoid1.69E-22
10GO:0009535: chloroplast thylakoid membrane4.54E-16
11GO:0009543: chloroplast thylakoid lumen1.80E-13
12GO:0005840: ribosome9.89E-13
13GO:0031977: thylakoid lumen3.70E-11
14GO:0009505: plant-type cell wall4.42E-09
15GO:0010007: magnesium chelatase complex3.35E-08
16GO:0016020: membrane3.42E-07
17GO:0005576: extracellular region1.43E-06
18GO:0030095: chloroplast photosystem II2.10E-06
19GO:0005618: cell wall5.90E-06
20GO:0048046: apoplast6.85E-05
21GO:0009654: photosystem II oxygen evolving complex1.38E-04
22GO:0042807: central vacuole2.54E-04
23GO:0031225: anchored component of membrane2.84E-04
24GO:0043674: columella3.11E-04
25GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.11E-04
26GO:0009923: fatty acid elongase complex3.11E-04
27GO:0009547: plastid ribosome3.11E-04
28GO:0019898: extrinsic component of membrane3.83E-04
29GO:0046658: anchored component of plasma membrane5.03E-04
30GO:0030093: chloroplast photosystem I6.81E-04
31GO:0000311: plastid large ribosomal subunit8.60E-04
32GO:0000312: plastid small ribosomal subunit1.09E-03
33GO:0009897: external side of plasma membrane1.10E-03
34GO:0009509: chromoplast1.10E-03
35GO:0016328: lateral plasma membrane1.10E-03
36GO:0032432: actin filament bundle1.58E-03
37GO:0015935: small ribosomal subunit1.82E-03
38GO:0005886: plasma membrane2.77E-03
39GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.35E-03
40GO:0005768: endosome4.72E-03
41GO:0009295: nucleoid4.73E-03
42GO:0010319: stromule4.73E-03
43GO:0009986: cell surface4.76E-03
44GO:0009533: chloroplast stromal thylakoid4.76E-03
45GO:0005773: vacuole5.01E-03
46GO:0009538: photosystem I reaction center5.53E-03
47GO:0000326: protein storage vacuole6.33E-03
48GO:0008180: COP9 signalosome7.19E-03
49GO:0009536: plastid8.65E-03
50GO:0005884: actin filament9.96E-03
51GO:0009508: plastid chromosome1.20E-02
52GO:0005887: integral component of plasma membrane1.23E-02
53GO:0015629: actin cytoskeleton2.14E-02
54GO:0009522: photosystem I2.83E-02
55GO:0009523: photosystem II2.97E-02
56GO:0005794: Golgi apparatus3.09E-02
57GO:0005802: trans-Golgi network3.69E-02
58GO:0009705: plant-type vacuole membrane3.78E-02
59GO:0030529: intracellular ribonucleoprotein complex4.05E-02
60GO:0019005: SCF ubiquitin ligase complex4.89E-02
61GO:0022627: cytosolic small ribosomal subunit4.98E-02
<
Gene type



Gene DE type