co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G48900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0016553: base conversion or substitution editing	0.00E+00
4	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
5	GO:0042493: response to drug	0.00E+00
6	GO:0042371: vitamin K biosynthetic process	0.00E+00
7	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
8	GO:0009773: photosynthetic electron transport in photosystem I	2.50E-08
9	GO:0042335: cuticle development	1.25E-06
10	GO:0015979: photosynthesis	1.63E-06
11	GO:0010196: nonphotochemical quenching	9.71E-06
12	GO:0015995: chlorophyll biosynthetic process	1.10E-05
13	GO:0032544: plastid translation	2.08E-05
14	GO:0090391: granum assembly	2.30E-05
15	GO:0009735: response to cytokinin	2.92E-05
16	GO:0016024: CDP-diacylglycerol biosynthetic process	7.75E-05
17	GO:0010027: thylakoid membrane organization	1.12E-04
18	GO:0006655: phosphatidylglycerol biosynthetic process	1.99E-04
19	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.10E-04
20	GO:0009772: photosynthetic electron transport in photosystem II	3.47E-04
21	GO:0043489: RNA stabilization	3.84E-04
22	GO:1904966: positive regulation of vitamin E biosynthetic process	3.84E-04
23	GO:1904964: positive regulation of phytol biosynthetic process	3.84E-04
24	GO:0042759: long-chain fatty acid biosynthetic process	3.84E-04
25	GO:0071588: hydrogen peroxide mediated signaling pathway	3.84E-04
26	GO:0010206: photosystem II repair	6.38E-04
27	GO:0006869: lipid transport	6.78E-04
28	GO:0009416: response to light stimulus	7.65E-04
29	GO:0009828: plant-type cell wall loosening	7.90E-04
30	GO:0043255: regulation of carbohydrate biosynthetic process	8.33E-04
31	GO:1902326: positive regulation of chlorophyll biosynthetic process	8.33E-04
32	GO:0010115: regulation of abscisic acid biosynthetic process	8.33E-04
33	GO:0001736: establishment of planar polarity	8.33E-04
34	GO:0010024: phytochromobilin biosynthetic process	8.33E-04
35	GO:0010015: root morphogenesis	1.01E-03
36	GO:0042254: ribosome biogenesis	1.18E-03
37	GO:2000012: regulation of auxin polar transport	1.31E-03
38	GO:0015714: phosphoenolpyruvate transport	1.35E-03
39	GO:0006788: heme oxidation	1.35E-03
40	GO:0006518: peptide metabolic process	1.35E-03
41	GO:0006013: mannose metabolic process	1.35E-03
42	GO:0010143: cutin biosynthetic process	1.47E-03
43	GO:0010207: photosystem II assembly	1.47E-03
44	GO:0080167: response to karrikin	1.66E-03
45	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.77E-03
46	GO:0010025: wax biosynthetic process	1.84E-03
47	GO:0080170: hydrogen peroxide transmembrane transport	1.95E-03
48	GO:0009650: UV protection	1.95E-03
49	GO:0051016: barbed-end actin filament capping	1.95E-03
50	GO:1901332: negative regulation of lateral root development	1.95E-03
51	GO:0051513: regulation of monopolar cell growth	1.95E-03
52	GO:0071484: cellular response to light intensity	1.95E-03
53	GO:0051639: actin filament network formation	1.95E-03
54	GO:0010239: chloroplast mRNA processing	1.95E-03
55	GO:0034599: cellular response to oxidative stress	1.96E-03
56	GO:0006412: translation	2.04E-03
57	GO:0051017: actin filament bundle assembly	2.04E-03
58	GO:0045490: pectin catabolic process	2.54E-03
59	GO:0045727: positive regulation of translation	2.62E-03
60	GO:0022622: root system development	2.62E-03
61	GO:0030104: water homeostasis	2.62E-03
62	GO:0015713: phosphoglycerate transport	2.62E-03
63	GO:0009956: radial pattern formation	2.62E-03
64	GO:0051764: actin crosslink formation	2.62E-03
65	GO:0016042: lipid catabolic process	3.15E-03
66	GO:0006564: L-serine biosynthetic process	3.35E-03
67	GO:0010236: plastoquinone biosynthetic process	3.35E-03
68	GO:0009664: plant-type cell wall organization	3.43E-03
69	GO:0034220: ion transmembrane transport	3.75E-03
70	GO:0009958: positive gravitropism	4.05E-03
71	GO:0009913: epidermal cell differentiation	4.14E-03
72	GO:0010337: regulation of salicylic acid metabolic process	4.14E-03
73	GO:0006561: proline biosynthetic process	4.14E-03
74	GO:0006751: glutathione catabolic process	4.14E-03
75	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.14E-03
76	GO:0009826: unidimensional cell growth	4.67E-03
77	GO:0042372: phylloquinone biosynthetic process	4.99E-03
78	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.99E-03
79	GO:0017148: negative regulation of translation	4.99E-03
80	GO:1901259: chloroplast rRNA processing	4.99E-03
81	GO:0006694: steroid biosynthetic process	4.99E-03
82	GO:0010019: chloroplast-nucleus signaling pathway	4.99E-03
83	GO:0000302: response to reactive oxygen species	5.00E-03
84	GO:0009624: response to nematode	5.88E-03
85	GO:1900057: positive regulation of leaf senescence	5.89E-03
86	GO:0010444: guard mother cell differentiation	5.89E-03
87	GO:0032880: regulation of protein localization	5.89E-03
88	GO:0009395: phospholipid catabolic process	5.89E-03
89	GO:0051693: actin filament capping	5.89E-03
90	GO:0008610: lipid biosynthetic process	6.85E-03
91	GO:0030091: protein repair	6.85E-03
92	GO:0046620: regulation of organ growth	6.85E-03
93	GO:0006353: DNA-templated transcription, termination	6.85E-03
94	GO:0006605: protein targeting	6.85E-03
95	GO:0031540: regulation of anthocyanin biosynthetic process	6.85E-03
96	GO:0009808: lignin metabolic process	7.86E-03
97	GO:0009627: systemic acquired resistance	8.09E-03
98	GO:0009245: lipid A biosynthetic process	8.92E-03
99	GO:0034765: regulation of ion transmembrane transport	8.92E-03
100	GO:0000902: cell morphogenesis	8.92E-03
101	GO:0042744: hydrogen peroxide catabolic process	9.25E-03
102	GO:0010311: lateral root formation	9.95E-03
103	GO:0010205: photoinhibition	1.00E-02
104	GO:0009638: phototropism	1.00E-02
105	GO:0006633: fatty acid biosynthetic process	1.05E-02
106	GO:0009631: cold acclimation	1.10E-02
107	GO:0007568: aging	1.10E-02
108	GO:0006032: chitin catabolic process	1.12E-02
109	GO:0009688: abscisic acid biosynthetic process	1.12E-02
110	GO:0048829: root cap development	1.12E-02
111	GO:0006949: syncytium formation	1.12E-02
112	GO:0043085: positive regulation of catalytic activity	1.24E-02
113	GO:0009408: response to heat	1.24E-02
114	GO:0009750: response to fructose	1.24E-02
115	GO:0018119: peptidyl-cysteine S-nitrosylation	1.24E-02
116	GO:0048765: root hair cell differentiation	1.24E-02
117	GO:0000038: very long-chain fatty acid metabolic process	1.24E-02
118	GO:0009733: response to auxin	1.33E-02
119	GO:0030001: metal ion transport	1.37E-02
120	GO:0010102: lateral root morphogenesis	1.49E-02
121	GO:0009785: blue light signaling pathway	1.49E-02
122	GO:0010628: positive regulation of gene expression	1.49E-02
123	GO:0006006: glucose metabolic process	1.49E-02
124	GO:0010229: inflorescence development	1.49E-02
125	GO:0030036: actin cytoskeleton organization	1.49E-02
126	GO:0009718: anthocyanin-containing compound biosynthetic process	1.49E-02
127	GO:0009725: response to hormone	1.49E-02
128	GO:0009926: auxin polar transport	1.55E-02
129	GO:0009933: meristem structural organization	1.63E-02
130	GO:0019253: reductive pentose-phosphate cycle	1.63E-02
131	GO:0007015: actin filament organization	1.63E-02
132	GO:0048467: gynoecium development	1.63E-02
133	GO:0009825: multidimensional cell growth	1.77E-02
134	GO:0010167: response to nitrate	1.77E-02
135	GO:0071732: cellular response to nitric oxide	1.77E-02
136	GO:0010030: positive regulation of seed germination	1.77E-02
137	GO:0010053: root epidermal cell differentiation	1.77E-02
138	GO:0006636: unsaturated fatty acid biosynthetic process	1.91E-02
139	GO:0042023: DNA endoreduplication	1.91E-02
140	GO:0006833: water transport	1.91E-02
141	GO:0000027: ribosomal large subunit assembly	2.05E-02
142	GO:0009658: chloroplast organization	2.06E-02
143	GO:0009734: auxin-activated signaling pathway	2.08E-02
144	GO:0009809: lignin biosynthetic process	2.10E-02
145	GO:0007017: microtubule-based process	2.20E-02
146	GO:0019953: sexual reproduction	2.20E-02
147	GO:0006810: transport	2.22E-02
148	GO:0003333: amino acid transmembrane transport	2.36E-02
149	GO:0016998: cell wall macromolecule catabolic process	2.36E-02
150	GO:0005975: carbohydrate metabolic process	2.36E-02
151	GO:0030245: cellulose catabolic process	2.51E-02
152	GO:0009411: response to UV	2.67E-02
153	GO:0071369: cellular response to ethylene stimulus	2.67E-02
154	GO:0006284: base-excision repair	2.84E-02
155	GO:0019722: calcium-mediated signaling	2.84E-02
156	GO:0042127: regulation of cell proliferation	2.84E-02
157	GO:0009306: protein secretion	2.84E-02
158	GO:0008284: positive regulation of cell proliferation	3.01E-02
159	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.01E-02
160	GO:0009742: brassinosteroid mediated signaling pathway	3.17E-02
161	GO:0042391: regulation of membrane potential	3.18E-02
162	GO:0080022: primary root development	3.18E-02
163	GO:0000413: protein peptidyl-prolyl isomerization	3.18E-02
164	GO:0042631: cellular response to water deprivation	3.18E-02
165	GO:0010305: leaf vascular tissue pattern formation	3.35E-02
166	GO:0006662: glycerol ether metabolic process	3.35E-02
167	GO:0010182: sugar mediated signaling pathway	3.35E-02
168	GO:0009741: response to brassinosteroid	3.35E-02
169	GO:0015986: ATP synthesis coupled proton transport	3.53E-02
170	GO:0055114: oxidation-reduction process	3.62E-02
171	GO:0016132: brassinosteroid biosynthetic process	3.89E-02
172	GO:0016032: viral process	4.08E-02
173	GO:0009630: gravitropism	4.08E-02
174	GO:0071281: cellular response to iron ion	4.27E-02
175	GO:0010252: auxin homeostasis	4.46E-02
176	GO:0071805: potassium ion transmembrane transport	4.66E-02
177	GO:0007267: cell-cell signaling	4.66E-02
178	GO:0040008: regulation of growth	4.90E-02
179	GO:0009409: response to cold	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0047661: amino-acid racemase activity	0.00E+00
6	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
7	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
8	GO:0050614: delta24-sterol reductase activity	0.00E+00
9	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
10	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
11	GO:0019843: rRNA binding	1.31E-08
12	GO:0005528: FK506 binding	8.60E-06
13	GO:0016788: hydrolase activity, acting on ester bonds	4.07E-05
14	GO:0016851: magnesium chelatase activity	5.04E-05
15	GO:0001872: (1->3)-beta-D-glucan binding	5.04E-05
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.54E-05
17	GO:0003735: structural constituent of ribosome	7.79E-05
18	GO:0008266: poly(U) RNA binding	1.14E-04
19	GO:0004130: cytochrome-c peroxidase activity	1.99E-04
20	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.99E-04
21	GO:0030570: pectate lyase activity	3.10E-04
22	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	3.84E-04
23	GO:0045485: omega-6 fatty acid desaturase activity	3.84E-04
24	GO:0019210: kinase inhibitor activity	3.84E-04
25	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	3.84E-04
26	GO:0052689: carboxylic ester hydrolase activity	4.78E-04
27	GO:0051015: actin filament binding	7.29E-04
28	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	8.33E-04
29	GO:0003839: gamma-glutamylcyclotransferase activity	8.33E-04
30	GO:0004617: phosphoglycerate dehydrogenase activity	8.33E-04
31	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	8.33E-04
32	GO:0016746: transferase activity, transferring acyl groups	1.15E-03
33	GO:0030247: polysaccharide binding	1.20E-03
34	GO:0050734: hydroxycinnamoyltransferase activity	1.35E-03
35	GO:0090729: toxin activity	1.35E-03
36	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.35E-03
37	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.35E-03
38	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.35E-03
39	GO:0016829: lyase activity	1.75E-03
40	GO:0043023: ribosomal large subunit binding	1.95E-03
41	GO:0010328: auxin influx transmembrane transporter activity	2.62E-03
42	GO:0052793: pectin acetylesterase activity	2.62E-03
43	GO:0043495: protein anchor	2.62E-03
44	GO:0004392: heme oxygenase (decyclizing) activity	2.62E-03
45	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.62E-03
46	GO:0015120: phosphoglycerate transmembrane transporter activity	2.62E-03
47	GO:0004659: prenyltransferase activity	2.62E-03
48	GO:0010011: auxin binding	2.62E-03
49	GO:0008725: DNA-3-methyladenine glycosylase activity	3.35E-03
50	GO:0031177: phosphopantetheine binding	4.14E-03
51	GO:0016688: L-ascorbate peroxidase activity	4.14E-03
52	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.14E-03
53	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.61E-03
54	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.99E-03
55	GO:0016832: aldehyde-lyase activity	4.99E-03
56	GO:0000035: acyl binding	4.99E-03
57	GO:0004559: alpha-mannosidase activity	4.99E-03
58	GO:0005242: inward rectifier potassium channel activity	4.99E-03
59	GO:0019899: enzyme binding	5.89E-03
60	GO:0008289: lipid binding	5.92E-03
61	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	6.85E-03
62	GO:0052747: sinapyl alcohol dehydrogenase activity	6.85E-03
63	GO:0015250: water channel activity	7.24E-03
64	GO:0047617: acyl-CoA hydrolase activity	1.00E-02
65	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.10E-02
66	GO:0004568: chitinase activity	1.12E-02
67	GO:0008047: enzyme activator activity	1.12E-02
68	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.37E-02
69	GO:0004565: beta-galactosidase activity	1.49E-02
70	GO:0004022: alcohol dehydrogenase (NAD) activity	1.49E-02
71	GO:0031072: heat shock protein binding	1.49E-02
72	GO:0042802: identical protein binding	1.60E-02
73	GO:0008083: growth factor activity	1.63E-02
74	GO:0016491: oxidoreductase activity	1.81E-02
75	GO:0051287: NAD binding	1.88E-02
76	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.91E-02
77	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.91E-02
78	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.91E-02
79	GO:0004176: ATP-dependent peptidase activity	2.36E-02
80	GO:0008810: cellulase activity	2.67E-02
81	GO:0022891: substrate-specific transmembrane transporter activity	2.67E-02
82	GO:0004650: polygalacturonase activity	2.73E-02
83	GO:0003756: protein disulfide isomerase activity	2.84E-02
84	GO:0047134: protein-disulfide reductase activity	3.01E-02
85	GO:0030551: cyclic nucleotide binding	3.18E-02
86	GO:0005249: voltage-gated potassium channel activity	3.18E-02
87	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.35E-02
88	GO:0008080: N-acetyltransferase activity	3.35E-02
89	GO:0050662: coenzyme binding	3.53E-02
90	GO:0004791: thioredoxin-disulfide reductase activity	3.53E-02
91	GO:0004871: signal transducer activity	3.57E-02
92	GO:0004872: receptor activity	3.71E-02
93	GO:0004518: nuclease activity	4.08E-02
94	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.27E-02
95	GO:0016791: phosphatase activity	4.46E-02
96	GO:0005200: structural constituent of cytoskeleton	4.66E-02
97	GO:0016597: amino acid binding	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009507: chloroplast	2.49E-22
4	GO:0009535: chloroplast thylakoid membrane	6.60E-21
5	GO:0009579: thylakoid	1.05E-19
6	GO:0009534: chloroplast thylakoid	1.17E-19
7	GO:0009570: chloroplast stroma	1.11E-15
8	GO:0009543: chloroplast thylakoid lumen	1.34E-15
9	GO:0009941: chloroplast envelope	7.18E-14
10	GO:0031977: thylakoid lumen	1.51E-10
11	GO:0009505: plant-type cell wall	1.03E-05
12	GO:0010007: magnesium chelatase complex	2.30E-05
13	GO:0005840: ribosome	2.47E-05
14	GO:0048046: apoplast	7.70E-05
15	GO:0005576: extracellular region	1.11E-04
16	GO:0005618: cell wall	1.12E-04
17	GO:0030095: chloroplast photosystem II	1.14E-04
18	GO:0009654: photosystem II oxygen evolving complex	2.12E-04
19	GO:0043674: columella	3.84E-04
20	GO:0009547: plastid ribosome	3.84E-04
21	GO:0019898: extrinsic component of membrane	5.67E-04
22	GO:0031225: anchored component of membrane	6.24E-04
23	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.38E-04
24	GO:0008180: COP9 signalosome	6.38E-04
25	GO:0030093: chloroplast photosystem I	8.33E-04
26	GO:0008290: F-actin capping protein complex	8.33E-04
27	GO:0046658: anchored component of plasma membrane	8.70E-04
28	GO:0016020: membrane	1.00E-03
29	GO:0005884: actin filament	1.01E-03
30	GO:0005886: plasma membrane	1.47E-03
31	GO:0031969: chloroplast membrane	1.66E-03
32	GO:0032432: actin filament bundle	1.95E-03
33	GO:0015630: microtubule cytoskeleton	1.95E-03
34	GO:0009506: plasmodesma	4.02E-03
35	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	4.14E-03
36	GO:0009523: photosystem II	4.67E-03
37	GO:0009536: plastid	5.58E-03
38	GO:0042807: central vacuole	5.89E-03
39	GO:0009986: cell surface	5.89E-03
40	GO:0009295: nucleoid	6.44E-03
41	GO:0019005: SCF ubiquitin ligase complex	9.46E-03
42	GO:0090404: pollen tube tip	1.24E-02
43	GO:0000311: plastid large ribosomal subunit	1.37E-02
44	GO:0009508: plastid chromosome	1.49E-02
45	GO:0005578: proteinaceous extracellular matrix	1.49E-02
46	GO:0000312: plastid small ribosomal subunit	1.63E-02
47	GO:0000502: proteasome complex	2.10E-02
48	GO:0042651: thylakoid membrane	2.20E-02
49	GO:0015629: actin cytoskeleton	2.67E-02
50	GO:0009706: chloroplast inner membrane	2.99E-02
51	GO:0010287: plastoglobule	3.54E-02
52	GO:0010319: stromule	4.66E-02