Gene: AT4G15560
     

Gene description


TAIR ID: AT4G15560

Short description: Deoxyxylulose-5-phosphate synthase

Pathogen responsiveness: -0.37

General responsiveness: 0.67

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G137151  

Wheat: No orthologous gene

GO biological process


thiamine biosynthetic process, terpenoid biosynthetic process, 1-deoxy-D-xylulose 5-phosphate biosynthetic process, chlorophyll biosynthetic process, isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway


GO cellular component


chloroplast, chloroplast stroma


GO molecular function


metal ion binding, protein binding, 1-deoxy-D-xylulose-5-phosphate synthase activity


Protein domain


PfamPF02779, Transketolase, pyrimidine binding domain
PfamPF13292, 1-deoxy-D-xylulose-5-phosphate synthase
PfamPF02780, Transketolase, C-terminal domain
SMARTSM00861, Transket_pyr

Transcriptional regulation


Regulator:
AT2G43010

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 17 (Top10%)

click to view PPI network

Differentially expressed condition


17 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17464Penta, controlPenta, Flg22 2 h-1.583.37E-05
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-2.427.76E-09
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-1.918.29E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-2.443.83E-12
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-1.833.29E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-2.601.72E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.641.56E-09
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-2.551.88E-12
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-1.592.32E-09
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-1.813.81E-07
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-2.115.36E-10
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-2.492.88E-17
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-2.075.01E-13
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.937.79E-12
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h-2.018.81E-13
GSE56094Col, WT, control 8 hCol, WT, PstDC3000 8 h-1.763.41E-10
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-1.871.59E-03






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