Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G15560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
2GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0016118: carotenoid catabolic process0.00E+00
5GO:0042820: vitamin B6 catabolic process0.00E+00
6GO:0046471: phosphatidylglycerol metabolic process0.00E+00
7GO:1902171: regulation of tocopherol cyclase activity0.00E+00
8GO:1901918: negative regulation of exoribonuclease activity0.00E+00
9GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
10GO:0033494: ferulate metabolic process0.00E+00
11GO:1901259: chloroplast rRNA processing3.37E-06
12GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.35E-05
13GO:0009773: photosynthetic electron transport in photosystem I3.66E-05
14GO:0009658: chloroplast organization1.11E-04
15GO:0080112: seed growth3.04E-04
16GO:1905039: carboxylic acid transmembrane transport3.04E-04
17GO:0043953: protein transport by the Tat complex3.04E-04
18GO:1905200: gibberellic acid transmembrane transport3.04E-04
19GO:0046467: membrane lipid biosynthetic process3.04E-04
20GO:0071277: cellular response to calcium ion3.04E-04
21GO:0065002: intracellular protein transmembrane transport3.04E-04
22GO:0080093: regulation of photorespiration3.04E-04
23GO:0031998: regulation of fatty acid beta-oxidation3.04E-04
24GO:0034337: RNA folding3.04E-04
25GO:0005991: trehalose metabolic process3.04E-04
26GO:0000476: maturation of 4.5S rRNA3.04E-04
27GO:0009443: pyridoxal 5'-phosphate salvage3.04E-04
28GO:0000967: rRNA 5'-end processing3.04E-04
29GO:0019252: starch biosynthetic process3.65E-04
30GO:0009657: plastid organization3.80E-04
31GO:0032544: plastid translation3.80E-04
32GO:0006810: transport4.03E-04
33GO:0032502: developmental process4.35E-04
34GO:0090333: regulation of stomatal closure4.57E-04
35GO:0006098: pentose-phosphate shunt4.57E-04
36GO:0005982: starch metabolic process5.40E-04
37GO:1902326: positive regulation of chlorophyll biosynthetic process6.66E-04
38GO:0016124: xanthophyll catabolic process6.66E-04
39GO:0034755: iron ion transmembrane transport6.66E-04
40GO:0071457: cellular response to ozone6.66E-04
41GO:0060151: peroxisome localization6.66E-04
42GO:1904143: positive regulation of carotenoid biosynthetic process6.66E-04
43GO:0016121: carotene catabolic process6.66E-04
44GO:0034470: ncRNA processing6.66E-04
45GO:0051645: Golgi localization6.66E-04
46GO:0080029: cellular response to boron-containing substance levels6.66E-04
47GO:0030048: actin filament-based movement9.40E-04
48GO:0006094: gluconeogenesis9.40E-04
49GO:0010207: photosystem II assembly1.06E-03
50GO:0048467: gynoecium development1.06E-03
51GO:0010143: cutin biosynthetic process1.06E-03
52GO:0009405: pathogenesis1.08E-03
53GO:0006954: inflammatory response1.08E-03
54GO:0090391: granum assembly1.08E-03
55GO:0051646: mitochondrion localization1.08E-03
56GO:0090436: leaf pavement cell development1.08E-03
57GO:0005977: glycogen metabolic process1.08E-03
58GO:0015979: photosynthesis1.15E-03
59GO:0055114: oxidation-reduction process1.44E-03
60GO:0006168: adenine salvage1.55E-03
61GO:0046713: borate transport1.55E-03
62GO:1902358: sulfate transmembrane transport1.55E-03
63GO:0006166: purine ribonucleoside salvage1.55E-03
64GO:0006020: inositol metabolic process1.55E-03
65GO:0071484: cellular response to light intensity1.55E-03
66GO:0009152: purine ribonucleotide biosynthetic process1.55E-03
67GO:0046653: tetrahydrofolate metabolic process1.55E-03
68GO:0009052: pentose-phosphate shunt, non-oxidative branch1.55E-03
69GO:0010114: response to red light1.66E-03
70GO:0006021: inositol biosynthetic process2.07E-03
71GO:0010021: amylopectin biosynthetic process2.07E-03
72GO:0071486: cellular response to high light intensity2.07E-03
73GO:0009765: photosynthesis, light harvesting2.07E-03
74GO:0015994: chlorophyll metabolic process2.07E-03
75GO:0010107: potassium ion import2.07E-03
76GO:0098719: sodium ion import across plasma membrane2.65E-03
77GO:0006564: L-serine biosynthetic process2.65E-03
78GO:0010236: plastoquinone biosynthetic process2.65E-03
79GO:0006097: glyoxylate cycle2.65E-03
80GO:0044209: AMP salvage2.65E-03
81GO:0071493: cellular response to UV-B2.65E-03
82GO:1902456: regulation of stomatal opening3.27E-03
83GO:0009228: thiamine biosynthetic process3.27E-03
84GO:0046855: inositol phosphate dephosphorylation3.27E-03
85GO:0042549: photosystem II stabilization3.27E-03
86GO:0009791: post-embryonic development3.31E-03
87GO:0010189: vitamin E biosynthetic process3.93E-03
88GO:0009955: adaxial/abaxial pattern specification3.93E-03
89GO:0008272: sulfate transport4.64E-03
90GO:0009769: photosynthesis, light harvesting in photosystem II4.64E-03
91GO:0009645: response to low light intensity stimulus4.64E-03
92GO:0009395: phospholipid catabolic process4.64E-03
93GO:0010027: thylakoid membrane organization5.13E-03
94GO:0042255: ribosome assembly5.39E-03
95GO:0006353: DNA-templated transcription, termination5.39E-03
96GO:0070413: trehalose metabolism in response to stress5.39E-03
97GO:0010078: maintenance of root meristem identity5.39E-03
98GO:0009704: de-etiolation5.39E-03
99GO:0050821: protein stabilization5.39E-03
100GO:0055075: potassium ion homeostasis5.39E-03
101GO:0052543: callose deposition in cell wall5.39E-03
102GO:0043562: cellular response to nitrogen levels6.18E-03
103GO:0019430: removal of superoxide radicals6.18E-03
104GO:0009821: alkaloid biosynthetic process7.01E-03
105GO:0051453: regulation of intracellular pH7.87E-03
106GO:0009641: shade avoidance8.77E-03
107GO:0031627: telomeric loop formation8.77E-03
108GO:0009089: lysine biosynthetic process via diaminopimelate9.71E-03
109GO:0015770: sucrose transport9.71E-03
110GO:0006415: translational termination9.71E-03
111GO:0006879: cellular iron ion homeostasis9.71E-03
112GO:0009684: indoleacetic acid biosynthetic process9.71E-03
113GO:0019684: photosynthesis, light reaction9.71E-03
114GO:0016024: CDP-diacylglycerol biosynthetic process1.07E-02
115GO:0006790: sulfur compound metabolic process1.07E-02
116GO:0051707: response to other organism1.10E-02
117GO:0006108: malate metabolic process1.17E-02
118GO:0009767: photosynthetic electron transport chain1.17E-02
119GO:0010588: cotyledon vascular tissue pattern formation1.17E-02
120GO:0005975: carbohydrate metabolic process1.22E-02
121GO:0010223: secondary shoot formation1.27E-02
122GO:0009901: anther dehiscence1.38E-02
123GO:0046854: phosphatidylinositol phosphorylation1.38E-02
124GO:0006636: unsaturated fatty acid biosynthetic process1.49E-02
125GO:0005992: trehalose biosynthetic process1.60E-02
126GO:0007017: microtubule-based process1.72E-02
127GO:0009768: photosynthesis, light harvesting in photosystem I1.72E-02
128GO:0006418: tRNA aminoacylation for protein translation1.72E-02
129GO:0080167: response to karrikin1.75E-02
130GO:0006096: glycolytic process1.75E-02
131GO:0048367: shoot system development1.81E-02
132GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.82E-02
133GO:0019915: lipid storage1.84E-02
134GO:0061077: chaperone-mediated protein folding1.84E-02
135GO:0009269: response to desiccation1.84E-02
136GO:0016226: iron-sulfur cluster assembly1.96E-02
137GO:0030433: ubiquitin-dependent ERAD pathway1.96E-02
138GO:0019748: secondary metabolic process1.96E-02
139GO:0009686: gibberellin biosynthetic process2.09E-02
140GO:0016117: carotenoid biosynthetic process2.35E-02
141GO:0042335: cuticle development2.48E-02
142GO:0080022: primary root development2.48E-02
143GO:0010087: phloem or xylem histogenesis2.48E-02
144GO:0006885: regulation of pH2.62E-02
145GO:0071472: cellular response to salt stress2.62E-02
146GO:0006520: cellular amino acid metabolic process2.62E-02
147GO:0010154: fruit development2.62E-02
148GO:0010182: sugar mediated signaling pathway2.62E-02
149GO:0009741: response to brassinosteroid2.62E-02
150GO:0010268: brassinosteroid homeostasis2.62E-02
151GO:0009958: positive gravitropism2.62E-02
152GO:0006814: sodium ion transport2.76E-02
153GO:0009646: response to absence of light2.76E-02
154GO:0009058: biosynthetic process2.79E-02
155GO:0048825: cotyledon development2.90E-02
156GO:0009851: auxin biosynthetic process2.90E-02
157GO:0016132: brassinosteroid biosynthetic process3.04E-02
158GO:0009630: gravitropism3.19E-02
159GO:0010090: trichome morphogenesis3.33E-02
160GO:1901657: glycosyl compound metabolic process3.33E-02
161GO:0009567: double fertilization forming a zygote and endosperm3.49E-02
162GO:0016125: sterol metabolic process3.49E-02
163GO:0046686: response to cadmium ion3.54E-02
164GO:0006974: cellular response to DNA damage stimulus4.27E-02
165GO:0042128: nitrate assimilation4.27E-02
166GO:0008380: RNA splicing4.35E-02
167GO:0015995: chlorophyll biosynthetic process4.44E-02
168GO:0016049: cell growth4.60E-02
169GO:0016311: dephosphorylation4.60E-02
170GO:0048481: plant ovule development4.77E-02
171GO:0018298: protein-chromophore linkage4.77E-02
172GO:0009817: defense response to fungus, incompatible interaction4.77E-02
173GO:0009832: plant-type cell wall biogenesis4.94E-02
174GO:0009813: flavonoid biosynthetic process4.94E-02
175GO:0006979: response to oxidative stress4.95E-02
RankGO TermAdjusted P value
1GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
2GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
3GO:0004822: isoleucine-tRNA ligase activity0.00E+00
4GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
5GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
6GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
7GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
8GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
9GO:0009011: starch synthase activity4.42E-07
10GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor6.01E-05
11GO:0004332: fructose-bisphosphate aldolase activity1.37E-04
12GO:0015168: glycerol transmembrane transporter activity3.04E-04
13GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.04E-04
14GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.04E-04
15GO:1905201: gibberellin transmembrane transporter activity3.04E-04
16GO:0051777: ent-kaurenoate oxidase activity3.04E-04
17GO:0008934: inositol monophosphate 1-phosphatase activity6.66E-04
18GO:0080097: L-tryptophan:pyruvate aminotransferase activity6.66E-04
19GO:0052833: inositol monophosphate 4-phosphatase activity6.66E-04
20GO:0019172: glyoxalase III activity6.66E-04
21GO:0019156: isoamylase activity6.66E-04
22GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.66E-04
23GO:0047746: chlorophyllase activity6.66E-04
24GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity6.66E-04
25GO:0009977: proton motive force dependent protein transmembrane transporter activity6.66E-04
26GO:0004617: phosphoglycerate dehydrogenase activity6.66E-04
27GO:0052832: inositol monophosphate 3-phosphatase activity6.66E-04
28GO:0033201: alpha-1,4-glucan synthase activity6.66E-04
29GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity6.66E-04
30GO:0019843: rRNA binding9.24E-04
31GO:0003774: motor activity1.06E-03
32GO:0002161: aminoacyl-tRNA editing activity1.08E-03
33GO:0090729: toxin activity1.08E-03
34GO:0004751: ribose-5-phosphate isomerase activity1.08E-03
35GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.08E-03
36GO:0070402: NADPH binding1.08E-03
37GO:0008864: formyltetrahydrofolate deformylase activity1.08E-03
38GO:0004373: glycogen (starch) synthase activity1.08E-03
39GO:0050734: hydroxycinnamoyltransferase activity1.08E-03
40GO:0005528: FK506 binding1.45E-03
41GO:0003999: adenine phosphoribosyltransferase activity1.55E-03
42GO:0016149: translation release factor activity, codon specific1.55E-03
43GO:0003883: CTP synthase activity1.55E-03
44GO:0016851: magnesium chelatase activity1.55E-03
45GO:0046715: borate transmembrane transporter activity1.55E-03
46GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.55E-03
47GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.02E-03
48GO:0045430: chalcone isomerase activity2.07E-03
49GO:0015204: urea transmembrane transporter activity2.07E-03
50GO:0004045: aminoacyl-tRNA hydrolase activity2.07E-03
51GO:0003727: single-stranded RNA binding2.28E-03
52GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity2.65E-03
53GO:0016846: carbon-sulfur lyase activity2.65E-03
54GO:0016788: hydrolase activity, acting on ester bonds3.01E-03
55GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.27E-03
56GO:0004784: superoxide dismutase activity3.27E-03
57GO:0004556: alpha-amylase activity3.27E-03
58GO:0004462: lactoylglutathione lyase activity3.27E-03
59GO:0015081: sodium ion transmembrane transporter activity3.27E-03
60GO:0016615: malate dehydrogenase activity3.27E-03
61GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.27E-03
62GO:2001070: starch binding3.27E-03
63GO:0048038: quinone binding3.55E-03
64GO:0030060: L-malate dehydrogenase activity3.93E-03
65GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.93E-03
66GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.93E-03
67GO:0016791: phosphatase activity4.30E-03
68GO:0004033: aldo-keto reductase (NADP) activity5.39E-03
69GO:0008135: translation factor activity, RNA binding6.18E-03
70GO:0008271: secondary active sulfate transmembrane transporter activity6.18E-03
71GO:0003747: translation release factor activity7.01E-03
72GO:0016844: strictosidine synthase activity7.87E-03
73GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.87E-03
74GO:0005381: iron ion transmembrane transporter activity7.87E-03
75GO:0003993: acid phosphatase activity8.87E-03
76GO:0016491: oxidoreductase activity9.25E-03
77GO:0004712: protein serine/threonine/tyrosine kinase activity9.27E-03
78GO:0015386: potassium:proton antiporter activity9.71E-03
79GO:0008515: sucrose transmembrane transporter activity9.71E-03
80GO:0008559: xenobiotic-transporting ATPase activity9.71E-03
81GO:0047372: acylglycerol lipase activity9.71E-03
82GO:0003691: double-stranded telomeric DNA binding9.71E-03
83GO:0000049: tRNA binding1.07E-02
84GO:0015116: sulfate transmembrane transporter activity1.07E-02
85GO:0008378: galactosyltransferase activity1.07E-02
86GO:0004185: serine-type carboxypeptidase activity1.10E-02
87GO:0004672: protein kinase activity1.14E-02
88GO:0004565: beta-galactosidase activity1.17E-02
89GO:0004022: alcohol dehydrogenase (NAD) activity1.17E-02
90GO:0031072: heat shock protein binding1.17E-02
91GO:0003725: double-stranded RNA binding1.17E-02
92GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.27E-02
93GO:0051119: sugar transmembrane transporter activity1.38E-02
94GO:0031409: pigment binding1.49E-02
95GO:0051536: iron-sulfur cluster binding1.60E-02
96GO:0030570: pectate lyase activity2.09E-02
97GO:0004812: aminoacyl-tRNA ligase activity2.35E-02
98GO:0015385: sodium:proton antiporter activity3.33E-02
99GO:0005200: structural constituent of cytoskeleton3.64E-02
100GO:0005525: GTP binding3.64E-02
101GO:0016722: oxidoreductase activity, oxidizing metal ions3.64E-02
102GO:0016597: amino acid binding3.79E-02
103GO:0015250: water channel activity3.95E-02
104GO:0016168: chlorophyll binding4.11E-02
105GO:0003743: translation initiation factor activity4.26E-02
106GO:0102483: scopolin beta-glucosidase activity4.44E-02
107GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.60E-02
108GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.62E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009507: chloroplast1.54E-28
4GO:0009534: chloroplast thylakoid1.55E-12
5GO:0009570: chloroplast stroma2.16E-11
6GO:0009535: chloroplast thylakoid membrane2.72E-09
7GO:0009941: chloroplast envelope1.48E-08
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.37E-07
9GO:0009579: thylakoid3.45E-07
10GO:0009543: chloroplast thylakoid lumen1.09E-06
11GO:0010287: plastoglobule1.32E-04
12GO:0031977: thylakoid lumen2.04E-04
13GO:0009344: nitrite reductase complex [NAD(P)H]3.04E-04
14GO:0031361: integral component of thylakoid membrane3.04E-04
15GO:0016459: myosin complex6.31E-04
16GO:0043036: starch grain6.66E-04
17GO:0033281: TAT protein transport complex1.08E-03
18GO:0010007: magnesium chelatase complex1.08E-03
19GO:0030658: transport vesicle membrane1.55E-03
20GO:0009654: photosystem II oxygen evolving complex1.60E-03
21GO:0009517: PSII associated light-harvesting complex II2.07E-03
22GO:0009522: photosystem I3.09E-03
23GO:0009523: photosystem II3.31E-03
24GO:0019898: extrinsic component of membrane3.31E-03
25GO:0009840: chloroplastic endopeptidase Clp complex3.93E-03
26GO:0005773: vacuole4.54E-03
27GO:0009501: amyloplast5.39E-03
28GO:0000783: nuclear telomere cap complex6.18E-03
29GO:0045298: tubulin complex7.01E-03
30GO:0005763: mitochondrial small ribosomal subunit7.01E-03
31GO:0032040: small-subunit processome1.07E-02
32GO:0009508: plastid chromosome1.17E-02
33GO:0030095: chloroplast photosystem II1.27E-02
34GO:0005618: cell wall1.32E-02
35GO:0030076: light-harvesting complex1.38E-02
36GO:0042651: thylakoid membrane1.72E-02
37GO:0031969: chloroplast membrane1.75E-02
38GO:0015935: small ribosomal subunit1.84E-02
39GO:0009532: plastid stroma1.84E-02
40GO:0048046: apoplast2.65E-02
41GO:0031965: nuclear membrane2.90E-02
42GO:0005886: plasma membrane3.31E-02
43GO:0009295: nucleoid3.64E-02
44GO:0010319: stromule3.64E-02
45GO:0030529: intracellular ribonucleoprotein complex3.95E-02
46GO:0005887: integral component of plasma membrane4.15E-02
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Gene type



Gene DE type