Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G15560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
2GO:0090627: plant epidermal cell differentiation0.00E+00
3GO:0009661: chromoplast organization0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:0046467: membrane lipid biosynthetic process5.48E-05
6GO:0043007: maintenance of rDNA5.48E-05
7GO:0000305: response to oxygen radical5.48E-05
8GO:0010588: cotyledon vascular tissue pattern formation8.50E-05
9GO:1904143: positive regulation of carotenoid biosynthetic process1.34E-04
10GO:0080022: primary root development2.70E-04
11GO:0010087: phloem or xylem histogenesis2.70E-04
12GO:0010305: leaf vascular tissue pattern formation2.91E-04
13GO:0046902: regulation of mitochondrial membrane permeability3.33E-04
14GO:0048825: cotyledon development3.37E-04
15GO:0006749: glutathione metabolic process4.45E-04
16GO:0010363: regulation of plant-type hypersensitive response4.45E-04
17GO:0016120: carotene biosynthetic process5.66E-04
18GO:0006656: phosphatidylcholine biosynthetic process5.66E-04
19GO:0015995: chlorophyll biosynthetic process6.07E-04
20GO:0032973: amino acid export6.92E-04
21GO:0009913: epidermal cell differentiation6.92E-04
22GO:0010019: chloroplast-nucleus signaling pathway8.25E-04
23GO:0009772: photosynthetic electron transport in photosystem II9.62E-04
24GO:0043090: amino acid import9.62E-04
25GO:1900056: negative regulation of leaf senescence9.62E-04
26GO:0009640: photomorphogenesis1.07E-03
27GO:0046620: regulation of organ growth1.11E-03
28GO:0010078: maintenance of root meristem identity1.11E-03
29GO:0050821: protein stabilization1.11E-03
30GO:0009657: plastid organization1.26E-03
31GO:0043562: cellular response to nitrogen levels1.26E-03
32GO:0015996: chlorophyll catabolic process1.26E-03
33GO:0010206: photosystem II repair1.41E-03
34GO:0080144: amino acid homeostasis1.41E-03
35GO:0010380: regulation of chlorophyll biosynthetic process1.58E-03
36GO:0010205: photoinhibition1.58E-03
37GO:0043067: regulation of programmed cell death1.58E-03
38GO:0048367: shoot system development1.72E-03
39GO:0045036: protein targeting to chloroplast1.75E-03
40GO:0043085: positive regulation of catalytic activity1.93E-03
41GO:0009684: indoleacetic acid biosynthetic process1.93E-03
42GO:0046856: phosphatidylinositol dephosphorylation1.93E-03
43GO:0006094: gluconeogenesis2.30E-03
44GO:0010207: photosystem II assembly2.49E-03
45GO:0048467: gynoecium development2.49E-03
46GO:0010030: positive regulation of seed germination2.70E-03
47GO:0006636: unsaturated fatty acid biosynthetic process2.90E-03
48GO:2000377: regulation of reactive oxygen species metabolic process3.11E-03
49GO:0009814: defense response, incompatible interaction3.77E-03
50GO:0007275: multicellular organism development3.84E-03
51GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.47E-03
52GO:0000271: polysaccharide biosynthetic process4.71E-03
53GO:0048653: anther development4.71E-03
54GO:0042631: cellular response to water deprivation4.71E-03
55GO:0071472: cellular response to salt stress4.96E-03
56GO:0009958: positive gravitropism4.96E-03
57GO:0009741: response to brassinosteroid4.96E-03
58GO:0045489: pectin biosynthetic process4.96E-03
59GO:0009851: auxin biosynthetic process5.48E-03
60GO:0010193: response to ozone5.74E-03
61GO:0048510: regulation of timing of transition from vegetative to reproductive phase5.74E-03
62GO:0071805: potassium ion transmembrane transport6.83E-03
63GO:0045454: cell redox homeostasis7.82E-03
64GO:0032259: methylation9.24E-03
65GO:0006629: lipid metabolic process9.65E-03
66GO:0009631: cold acclimation9.86E-03
67GO:0048527: lateral root development9.86E-03
68GO:0007568: aging9.86E-03
69GO:0009910: negative regulation of flower development9.86E-03
70GO:0006865: amino acid transport1.02E-02
71GO:0016051: carbohydrate biosynthetic process1.05E-02
72GO:0034599: cellular response to oxidative stress1.09E-02
73GO:0006839: mitochondrial transport1.15E-02
74GO:0010114: response to red light1.26E-02
75GO:0009926: auxin polar transport1.26E-02
76GO:0009664: plant-type cell wall organization1.48E-02
77GO:0006364: rRNA processing1.55E-02
78GO:0009585: red, far-red light phototransduction1.55E-02
79GO:0006813: potassium ion transport1.55E-02
80GO:0010224: response to UV-B1.59E-02
81GO:0006857: oligopeptide transport1.63E-02
82GO:0006417: regulation of translation1.67E-02
83GO:0006096: glycolytic process1.75E-02
84GO:0009740: gibberellic acid mediated signaling pathway1.91E-02
85GO:0006396: RNA processing2.04E-02
86GO:0009742: brassinosteroid mediated signaling pathway2.08E-02
87GO:0009845: seed germination2.47E-02
88GO:0006633: fatty acid biosynthetic process2.75E-02
89GO:0040008: regulation of growth2.85E-02
90GO:0016567: protein ubiquitination2.91E-02
91GO:0042742: defense response to bacterium3.48E-02
92GO:0009733: response to auxin3.90E-02
93GO:0009826: unidimensional cell growth3.91E-02
94GO:0009658: chloroplast organization4.01E-02
95GO:0042254: ribosome biogenesis4.07E-02
96GO:0009723: response to ethylene4.45E-02
97GO:0009409: response to cold4.69E-02
98GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.79E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0051743: red chlorophyll catabolite reductase activity0.00E+00
3GO:0034639: L-amino acid efflux transmembrane transporter activity0.00E+00
4GO:0046906: tetrapyrrole binding5.48E-05
5GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.34E-04
6GO:0019172: glyoxalase III activity1.34E-04
7GO:0000234: phosphoethanolamine N-methyltransferase activity1.34E-04
8GO:0004362: glutathione-disulfide reductase activity1.34E-04
9GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.34E-04
10GO:0004312: fatty acid synthase activity1.34E-04
11GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity2.28E-04
12GO:0005471: ATP:ADP antiporter activity5.66E-04
13GO:0016846: carbon-sulfur lyase activity5.66E-04
14GO:0035673: oligopeptide transmembrane transporter activity6.92E-04
15GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity6.92E-04
16GO:0004462: lactoylglutathione lyase activity6.92E-04
17GO:0004332: fructose-bisphosphate aldolase activity6.92E-04
18GO:0005347: ATP transmembrane transporter activity8.25E-04
19GO:0019899: enzyme binding9.62E-04
20GO:0047372: acylglycerol lipase activity1.93E-03
21GO:0015198: oligopeptide transporter activity2.11E-03
22GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity2.11E-03
23GO:0031072: heat shock protein binding2.30E-03
24GO:0015079: potassium ion transmembrane transporter activity3.32E-03
25GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.77E-03
26GO:0003756: protein disulfide isomerase activity4.23E-03
27GO:0003727: single-stranded RNA binding4.23E-03
28GO:0019901: protein kinase binding5.48E-03
29GO:0004871: signal transducer activity8.20E-03
30GO:0008757: S-adenosylmethionine-dependent methyltransferase activity8.60E-03
31GO:0005096: GTPase activator activity9.22E-03
32GO:0030145: manganese ion binding9.86E-03
33GO:0004712: protein serine/threonine/tyrosine kinase activity1.12E-02
34GO:0050661: NADP binding1.15E-02
35GO:0043621: protein self-association1.33E-02
36GO:0008289: lipid binding1.35E-02
37GO:0016298: lipase activity1.59E-02
38GO:0015171: amino acid transmembrane transporter activity1.67E-02
39GO:0016787: hydrolase activity1.87E-02
40GO:0051082: unfolded protein binding1.99E-02
41GO:0005515: protein binding2.19E-02
42GO:0016758: transferase activity, transferring hexosyl groups2.29E-02
43GO:0005507: copper ion binding2.45E-02
44GO:0003743: translation initiation factor activity3.29E-02
45GO:0046982: protein heterodimerization activity3.96E-02
46GO:0016788: hydrolase activity, acting on ester bonds4.07E-02
47GO:0050660: flavin adenine dinucleotide binding4.45E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast8.23E-07
2GO:0009535: chloroplast thylakoid membrane3.42E-06
3GO:0009534: chloroplast thylakoid7.55E-06
4GO:0009941: chloroplast envelope4.31E-05
5GO:0031969: chloroplast membrane9.64E-05
6GO:0030095: chloroplast photosystem II9.76E-05
7GO:0009531: secondary cell wall3.33E-04
8GO:0009533: chloroplast stromal thylakoid9.62E-04
9GO:0009570: chloroplast stroma1.93E-03
10GO:0016602: CCAAT-binding factor complex2.30E-03
11GO:0009543: chloroplast thylakoid lumen2.49E-03
12GO:0016021: integral component of membrane3.43E-03
13GO:0009523: photosystem II5.48E-03
14GO:0009536: plastid9.23E-03
15GO:0031977: thylakoid lumen1.19E-02
16GO:0009706: chloroplast inner membrane1.99E-02
17GO:0005623: cell2.38E-02
Gene type



Gene DE type