gene detail

Gene description

TAIR ID: AT4G00180

Short description: Plant-specific transcription factor YABBY family protein

Pathogen responsiveness: -0.58

General responsiveness: 0.75

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G167824

Wheat: No orthologous gene

GO biological process

regulation of shoot apical meristem development, fruit development, abaxial cell fate specification, regulation of leaf development, regulation of transcription, DNA-templated, polarity specification of adaxial/abaxial axis, multicellular organism development

GO cellular component

nucleus

GO molecular function

protein binding, transcription factor activity, sequence-specific DNA binding, DNA binding, metal ion binding

Protein domain

Pfam	PF04690, YABBY protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT2G28610, AT1G24260, AT1G65620, AT4G37750, AT5G61850

Target:
AT5G60910, AT1G65620, AT1G62360

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

15 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, WT, water 4 h	Col, WT, Flg22 4 h	-1.58	9.20E-04
GSE17464	Laer, control	Laer, Flg22 2 h	-1.54	5.60E-05
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.80	1.09E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.82	4.15E-06
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.93	5.75E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.82	9.46E-11
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.80	1.24E-02
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-2.04	1.26E-04
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.94	1.83E-04
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.91	2.47E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.90	4.71E-14
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.67	4.02E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.86	6.08E-14
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.92	5.35E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	-2.02	2.05E-04