co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G00180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000469: negative regulation of peroxidase activity	0.00E+00
2	GO:0090706: specification of plant organ position	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0045176: apical protein localization	0.00E+00
5	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
6	GO:0007037: vacuolar phosphate transport	0.00E+00
7	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
8	GO:2001294: malonyl-CoA catabolic process	0.00E+00
9	GO:0006021: inositol biosynthetic process	6.70E-05
10	GO:0045038: protein import into chloroplast thylakoid membrane	1.05E-04
11	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.07E-04
12	GO:0006264: mitochondrial DNA replication	3.24E-04
13	GO:0033259: plastid DNA replication	3.24E-04
14	GO:1902458: positive regulation of stomatal opening	3.24E-04
15	GO:0048508: embryonic meristem development	3.24E-04
16	GO:0010450: inflorescence meristem growth	3.24E-04
17	GO:0051171: regulation of nitrogen compound metabolic process	3.24E-04
18	GO:0010362: negative regulation of anion channel activity by blue light	3.24E-04
19	GO:0031426: polycistronic mRNA processing	3.24E-04
20	GO:0071028: nuclear mRNA surveillance	3.24E-04
21	GO:0006659: phosphatidylserine biosynthetic process	3.24E-04
22	GO:0007155: cell adhesion	3.40E-04
23	GO:0009585: red, far-red light phototransduction	4.41E-04
24	GO:0010583: response to cyclopentenone	4.91E-04
25	GO:0009638: phototropism	5.92E-04
26	GO:0031125: rRNA 3'-end processing	7.07E-04
27	GO:0010155: regulation of proton transport	7.07E-04
28	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.07E-04
29	GO:0071051: polyadenylation-dependent snoRNA 3'-end processing	7.07E-04
30	GO:0034475: U4 snRNA 3'-end processing	7.07E-04
31	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	7.07E-04
32	GO:1900871: chloroplast mRNA modification	7.07E-04
33	GO:0009945: radial axis specification	7.07E-04
34	GO:0007154: cell communication	7.07E-04
35	GO:0045165: cell fate commitment	1.15E-03
36	GO:0016075: rRNA catabolic process	1.15E-03
37	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	1.15E-03
38	GO:0009405: pathogenesis	1.15E-03
39	GO:0006753: nucleoside phosphate metabolic process	1.15E-03
40	GO:0010143: cutin biosynthetic process	1.16E-03
41	GO:0048527: lateral root development	1.20E-03
42	GO:0009825: multidimensional cell growth	1.29E-03
43	GO:0042753: positive regulation of circadian rhythm	1.44E-03
44	GO:0009416: response to light stimulus	1.62E-03
45	GO:0006166: purine ribonucleoside salvage	1.65E-03
46	GO:0010239: chloroplast mRNA processing	1.65E-03
47	GO:0009647: skotomorphogenesis	1.65E-03
48	GO:0010255: glucose mediated signaling pathway	1.65E-03
49	GO:0006164: purine nucleotide biosynthetic process	1.65E-03
50	GO:0009963: positive regulation of flavonoid biosynthetic process	1.65E-03
51	GO:1990019: protein storage vacuole organization	1.65E-03
52	GO:0006168: adenine salvage	1.65E-03
53	GO:0035428: hexose transmembrane transport	2.11E-03
54	GO:0051322: anaphase	2.21E-03
55	GO:0009649: entrainment of circadian clock	2.21E-03
56	GO:0008295: spermidine biosynthetic process	2.21E-03
57	GO:0032366: intracellular sterol transport	2.21E-03
58	GO:0009902: chloroplast relocation	2.21E-03
59	GO:1902183: regulation of shoot apical meristem development	2.82E-03
60	GO:0044209: AMP salvage	2.82E-03
61	GO:0010158: abaxial cell fate specification	2.82E-03
62	GO:0034052: positive regulation of plant-type hypersensitive response	2.82E-03
63	GO:0006544: glycine metabolic process	2.82E-03
64	GO:0046283: anthocyanin-containing compound metabolic process	2.82E-03
65	GO:0009904: chloroplast accumulation movement	2.82E-03
66	GO:0046323: glucose import	3.16E-03
67	GO:0045489: pectin biosynthetic process	3.16E-03
68	GO:0007018: microtubule-based movement	3.39E-03
69	GO:0006751: glutathione catabolic process	3.49E-03
70	GO:0048827: phyllome development	3.49E-03
71	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.49E-03
72	GO:0000741: karyogamy	3.49E-03
73	GO:0046855: inositol phosphate dephosphorylation	3.49E-03
74	GO:0006563: L-serine metabolic process	3.49E-03
75	GO:0009791: post-embryonic development	3.64E-03
76	GO:0048825: cotyledon development	3.64E-03
77	GO:0008654: phospholipid biosynthetic process	3.64E-03
78	GO:0009088: threonine biosynthetic process	4.20E-03
79	GO:0009648: photoperiodism	4.20E-03
80	GO:0042372: phylloquinone biosynthetic process	4.20E-03
81	GO:0009082: branched-chain amino acid biosynthetic process	4.20E-03
82	GO:0009942: longitudinal axis specification	4.20E-03
83	GO:0048280: vesicle fusion with Golgi apparatus	4.20E-03
84	GO:0009099: valine biosynthetic process	4.20E-03
85	GO:0009903: chloroplast avoidance movement	4.20E-03
86	GO:0010189: vitamin E biosynthetic process	4.20E-03
87	GO:0009395: phospholipid catabolic process	4.95E-03
88	GO:0015937: coenzyme A biosynthetic process	4.95E-03
89	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	4.95E-03
90	GO:0030307: positive regulation of cell growth	4.95E-03
91	GO:0043068: positive regulation of programmed cell death	5.76E-03
92	GO:0010078: maintenance of root meristem identity	5.76E-03
93	GO:2000070: regulation of response to water deprivation	5.76E-03
94	GO:0043562: cellular response to nitrogen levels	6.60E-03
95	GO:0009808: lignin metabolic process	6.60E-03
96	GO:0010093: specification of floral organ identity	6.60E-03
97	GO:0015996: chlorophyll catabolic process	6.60E-03
98	GO:0007186: G-protein coupled receptor signaling pathway	6.60E-03
99	GO:0009097: isoleucine biosynthetic process	6.60E-03
100	GO:0006997: nucleus organization	6.60E-03
101	GO:0048573: photoperiodism, flowering	6.63E-03
102	GO:2000024: regulation of leaf development	7.48E-03
103	GO:0048507: meristem development	7.48E-03
104	GO:0006189: 'de novo' IMP biosynthetic process	7.48E-03
105	GO:0006811: ion transport	8.11E-03
106	GO:0009098: leucine biosynthetic process	8.41E-03
107	GO:0010018: far-red light signaling pathway	8.41E-03
108	GO:1900865: chloroplast RNA modification	8.41E-03
109	GO:0048354: mucilage biosynthetic process involved in seed coat development	8.41E-03
110	GO:0010380: regulation of chlorophyll biosynthetic process	8.41E-03
111	GO:0010119: regulation of stomatal movement	8.51E-03
112	GO:0045490: pectin catabolic process	8.59E-03
113	GO:0043069: negative regulation of programmed cell death	9.37E-03
114	GO:0009641: shade avoidance	9.37E-03
115	GO:0010215: cellulose microfibril organization	9.37E-03
116	GO:0010192: mucilage biosynthetic process	9.37E-03
117	GO:0006896: Golgi to vacuole transport	9.37E-03
118	GO:0009684: indoleacetic acid biosynthetic process	1.04E-02
119	GO:0000038: very long-chain fatty acid metabolic process	1.04E-02
120	GO:0009750: response to fructose	1.04E-02
121	GO:0006631: fatty acid metabolic process	1.11E-02
122	GO:0006790: sulfur compound metabolic process	1.14E-02
123	GO:0010152: pollen maturation	1.14E-02
124	GO:0016024: CDP-diacylglycerol biosynthetic process	1.14E-02
125	GO:0045037: protein import into chloroplast stroma	1.14E-02
126	GO:0010229: inflorescence development	1.25E-02
127	GO:0030036: actin cytoskeleton organization	1.25E-02
128	GO:0009767: photosynthetic electron transport chain	1.25E-02
129	GO:0006829: zinc II ion transport	1.25E-02
130	GO:0010588: cotyledon vascular tissue pattern formation	1.25E-02
131	GO:0009785: blue light signaling pathway	1.25E-02
132	GO:0009887: animal organ morphogenesis	1.36E-02
133	GO:0010540: basipetal auxin transport	1.36E-02
134	GO:0048467: gynoecium development	1.36E-02
135	GO:0006541: glutamine metabolic process	1.36E-02
136	GO:0010207: photosystem II assembly	1.36E-02
137	GO:0009933: meristem structural organization	1.36E-02
138	GO:0046854: phosphatidylinositol phosphorylation	1.48E-02
139	GO:0042343: indole glucosinolate metabolic process	1.48E-02
140	GO:0019853: L-ascorbic acid biosynthetic process	1.48E-02
141	GO:0090351: seedling development	1.48E-02
142	GO:0010030: positive regulation of seed germination	1.48E-02
143	GO:0000162: tryptophan biosynthetic process	1.60E-02
144	GO:0006636: unsaturated fatty acid biosynthetic process	1.60E-02
145	GO:0009944: polarity specification of adaxial/abaxial axis	1.72E-02
146	GO:0000027: ribosomal large subunit assembly	1.72E-02
147	GO:0007010: cytoskeleton organization	1.72E-02
148	GO:0010187: negative regulation of seed germination	1.72E-02
149	GO:0009723: response to ethylene	1.80E-02
150	GO:0009909: regulation of flower development	1.81E-02
151	GO:0010073: meristem maintenance	1.84E-02
152	GO:0007017: microtubule-based process	1.84E-02
153	GO:0051260: protein homooligomerization	1.97E-02
154	GO:0048511: rhythmic process	1.97E-02
155	GO:0098542: defense response to other organism	1.97E-02
156	GO:0019915: lipid storage	1.97E-02
157	GO:0071555: cell wall organization	1.98E-02
158	GO:0048367: shoot system development	1.99E-02
159	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.05E-02
160	GO:0010017: red or far-red light signaling pathway	2.10E-02
161	GO:0009814: defense response, incompatible interaction	2.10E-02
162	GO:0071215: cellular response to abscisic acid stimulus	2.23E-02
163	GO:0009294: DNA mediated transformation	2.23E-02
164	GO:0071369: cellular response to ethylene stimulus	2.23E-02
165	GO:0019722: calcium-mediated signaling	2.37E-02
166	GO:0051726: regulation of cell cycle	2.46E-02
167	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.51E-02
168	GO:0042147: retrograde transport, endosome to Golgi	2.51E-02
169	GO:0010087: phloem or xylem histogenesis	2.65E-02
170	GO:0048653: anther development	2.65E-02
171	GO:0042631: cellular response to water deprivation	2.65E-02
172	GO:0000271: polysaccharide biosynthetic process	2.65E-02
173	GO:0080022: primary root development	2.65E-02
174	GO:0010182: sugar mediated signaling pathway	2.80E-02
175	GO:0009958: positive gravitropism	2.80E-02
176	GO:0006520: cellular amino acid metabolic process	2.80E-02
177	GO:0010154: fruit development	2.80E-02
178	GO:0010197: polar nucleus fusion	2.80E-02
179	GO:0009646: response to absence of light	2.95E-02
180	GO:0009851: auxin biosynthetic process	3.10E-02
181	GO:0006623: protein targeting to vacuole	3.10E-02
182	GO:0009749: response to glucose	3.10E-02
183	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.25E-02
184	GO:0071554: cell wall organization or biogenesis	3.25E-02
185	GO:0006891: intra-Golgi vesicle-mediated transport	3.25E-02
186	GO:0006633: fatty acid biosynthetic process	3.65E-02
187	GO:0009639: response to red or far red light	3.73E-02
188	GO:0010252: auxin homeostasis	3.73E-02
189	GO:0006464: cellular protein modification process	3.73E-02
190	GO:0007267: cell-cell signaling	3.89E-02
191	GO:0007623: circadian rhythm	4.01E-02
192	GO:0000910: cytokinesis	4.06E-02
193	GO:0010228: vegetative to reproductive phase transition of meristem	4.19E-02
194	GO:0009911: positive regulation of flower development	4.23E-02
195	GO:0010027: thylakoid membrane organization	4.23E-02
196	GO:0009739: response to gibberellin	4.48E-02
197	GO:0006888: ER to Golgi vesicle-mediated transport	4.75E-02
198	GO:0010468: regulation of gene expression	4.77E-02
199	GO:0009617: response to bacterium	4.77E-02
200	GO:0016311: dephosphorylation	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:1990534: thermospermine oxidase activity	0.00E+00
2	GO:0022883: zinc efflux transmembrane transporter activity	0.00E+00
3	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
4	GO:0010276: phytol kinase activity	0.00E+00
5	GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	0.00E+00
6	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
7	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
8	GO:0008017: microtubule binding	5.31E-05
9	GO:0000293: ferric-chelate reductase activity	1.52E-04
10	GO:0030570: pectate lyase activity	2.22E-04
11	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.24E-04
12	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	3.24E-04
13	GO:0010945: CoA pyrophosphatase activity	3.24E-04
14	GO:0080132: fatty acid alpha-hydroxylase activity	3.24E-04
15	GO:0004795: threonine synthase activity	3.24E-04
16	GO:0004328: formamidase activity	3.24E-04
17	GO:0003777: microtubule motor activity	5.18E-04
18	GO:0080045: quercetin 3'-O-glucosyltransferase activity	7.07E-04
19	GO:0003839: gamma-glutamylcyclotransferase activity	7.07E-04
20	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	7.07E-04
21	GO:0004766: spermidine synthase activity	7.07E-04
22	GO:0052832: inositol monophosphate 3-phosphatase activity	7.07E-04
23	GO:0004312: fatty acid synthase activity	7.07E-04
24	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	7.07E-04
25	GO:0008934: inositol monophosphate 1-phosphatase activity	7.07E-04
26	GO:0052833: inositol monophosphate 4-phosphatase activity	7.07E-04
27	GO:0015929: hexosaminidase activity	7.07E-04
28	GO:0004563: beta-N-acetylhexosaminidase activity	7.07E-04
29	GO:0004512: inositol-3-phosphate synthase activity	7.07E-04
30	GO:0048531: beta-1,3-galactosyltransferase activity	7.07E-04
31	GO:0017118: lipoyltransferase activity	7.07E-04
32	GO:0004049: anthranilate synthase activity	1.15E-03
33	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.15E-03
34	GO:0050734: hydroxycinnamoyltransferase activity	1.15E-03
35	GO:0003913: DNA photolyase activity	1.15E-03
36	GO:0090729: toxin activity	1.15E-03
37	GO:0004148: dihydrolipoyl dehydrogenase activity	1.15E-03
38	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	1.15E-03
39	GO:0052654: L-leucine transaminase activity	1.65E-03
40	GO:0052655: L-valine transaminase activity	1.65E-03
41	GO:0048027: mRNA 5'-UTR binding	1.65E-03
42	GO:0003999: adenine phosphoribosyltransferase activity	1.65E-03
43	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	1.65E-03
44	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.65E-03
45	GO:0052656: L-isoleucine transaminase activity	1.65E-03
46	GO:0009882: blue light photoreceptor activity	1.65E-03
47	GO:0008409: 5'-3' exonuclease activity	2.21E-03
48	GO:0004084: branched-chain-amino-acid transaminase activity	2.21E-03
49	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.82E-03
50	GO:0016846: carbon-sulfur lyase activity	2.82E-03
51	GO:0004372: glycine hydroxymethyltransferase activity	2.82E-03
52	GO:0005355: glucose transmembrane transporter activity	3.39E-03
53	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.49E-03
54	GO:0080046: quercetin 4'-O-glucosyltransferase activity	3.49E-03
55	GO:0004605: phosphatidate cytidylyltransferase activity	3.49E-03
56	GO:0000210: NAD+ diphosphatase activity	3.49E-03
57	GO:0016208: AMP binding	3.49E-03
58	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.49E-03
59	GO:0042578: phosphoric ester hydrolase activity	3.49E-03
60	GO:0019901: protein kinase binding	3.64E-03
61	GO:0016491: oxidoreductase activity	3.76E-03
62	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.20E-03
63	GO:0051753: mannan synthase activity	4.20E-03
64	GO:0003872: 6-phosphofructokinase activity	4.95E-03
65	GO:0016829: lyase activity	6.29E-03
66	GO:0030247: polysaccharide binding	6.63E-03
67	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	8.11E-03
68	GO:0050897: cobalt ion binding	8.51E-03
69	GO:0003993: acid phosphatase activity	9.76E-03
70	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.14E-02
71	GO:0042802: identical protein binding	1.17E-02
72	GO:0000155: phosphorelay sensor kinase activity	1.25E-02
73	GO:0000175: 3'-5'-exoribonuclease activity	1.25E-02
74	GO:0008081: phosphoric diester hydrolase activity	1.25E-02
75	GO:0008131: primary amine oxidase activity	1.36E-02
76	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.36E-02
77	GO:0008146: sulfotransferase activity	1.48E-02
78	GO:0003887: DNA-directed DNA polymerase activity	1.60E-02
79	GO:0005528: FK506 binding	1.72E-02
80	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.97E-02
81	GO:0008408: 3'-5' exonuclease activity	1.97E-02
82	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.10E-02
83	GO:0016874: ligase activity	2.19E-02
84	GO:0016746: transferase activity, transferring acyl groups	2.39E-02
85	GO:0004871: signal transducer activity	2.62E-02
86	GO:0001085: RNA polymerase II transcription factor binding	2.80E-02
87	GO:0010181: FMN binding	2.95E-02
88	GO:0015144: carbohydrate transmembrane transporter activity	3.48E-02
89	GO:0016791: phosphatase activity	3.73E-02
90	GO:0004672: protein kinase activity	3.75E-02
91	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.89E-02
92	GO:0005200: structural constituent of cytoskeleton	3.89E-02
93	GO:0005351: sugar:proton symporter activity	3.92E-02
94	GO:0016413: O-acetyltransferase activity	4.06E-02
95	GO:0004721: phosphoprotein phosphatase activity	4.75E-02
96	GO:0046872: metal ion binding	4.85E-02