Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G55980

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071475: cellular hyperosmotic salinity response0.00E+00
2GO:0055091: phospholipid homeostasis0.00E+00
3GO:0035024: negative regulation of Rho protein signal transduction0.00E+00
4GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process0.00E+00
5GO:0070328: triglyceride homeostasis0.00E+00
6GO:0034775: glutathione transmembrane transport0.00E+00
7GO:0042344: indole glucosinolate catabolic process7.09E-06
8GO:0052544: defense response by callose deposition in cell wall1.40E-05
9GO:0046345: abscisic acid catabolic process3.00E-05
10GO:0010200: response to chitin4.72E-05
11GO:0009751: response to salicylic acid1.10E-04
12GO:0009865: pollen tube adhesion2.02E-04
13GO:0050691: regulation of defense response to virus by host2.02E-04
14GO:1902265: abscisic acid homeostasis2.02E-04
15GO:0097298: regulation of nucleus size2.02E-04
16GO:0046938: phytochelatin biosynthetic process2.02E-04
17GO:0009873: ethylene-activated signaling pathway2.05E-04
18GO:0006355: regulation of transcription, DNA-templated2.33E-04
19GO:0006351: transcription, DNA-templated2.98E-04
20GO:0015786: UDP-glucose transport4.52E-04
21GO:0015709: thiosulfate transport4.52E-04
22GO:0008616: queuosine biosynthetic process4.52E-04
23GO:0071422: succinate transmembrane transport4.52E-04
24GO:0031407: oxylipin metabolic process4.52E-04
25GO:0007000: nucleolus organization4.52E-04
26GO:0055088: lipid homeostasis4.52E-04
27GO:0006898: receptor-mediated endocytosis4.52E-04
28GO:0046786: viral replication complex formation and maintenance7.36E-04
29GO:0051211: anisotropic cell growth7.36E-04
30GO:0000280: nuclear division7.36E-04
31GO:0044210: 'de novo' CTP biosynthetic process7.36E-04
32GO:0016045: detection of bacterium7.36E-04
33GO:0010359: regulation of anion channel activity7.36E-04
34GO:0090630: activation of GTPase activity7.36E-04
35GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid7.36E-04
36GO:0015783: GDP-fucose transport7.36E-04
37GO:0080024: indolebutyric acid metabolic process1.05E-03
38GO:0055089: fatty acid homeostasis1.05E-03
39GO:0010371: regulation of gibberellin biosynthetic process1.05E-03
40GO:1901000: regulation of response to salt stress1.05E-03
41GO:0070301: cellular response to hydrogen peroxide1.05E-03
42GO:0015729: oxaloacetate transport1.05E-03
43GO:0072334: UDP-galactose transmembrane transport1.05E-03
44GO:0030100: regulation of endocytosis1.05E-03
45GO:0015700: arsenite transport1.05E-03
46GO:0001944: vasculature development1.18E-03
47GO:0009687: abscisic acid metabolic process1.40E-03
48GO:0051365: cellular response to potassium ion starvation1.40E-03
49GO:0022622: root system development1.40E-03
50GO:0006656: phosphatidylcholine biosynthetic process1.78E-03
51GO:0006873: cellular ion homeostasis1.78E-03
52GO:0048497: maintenance of floral organ identity1.78E-03
53GO:0006461: protein complex assembly1.78E-03
54GO:0006665: sphingolipid metabolic process1.78E-03
55GO:0032957: inositol trisphosphate metabolic process1.78E-03
56GO:0070897: DNA-templated transcriptional preinitiation complex assembly1.78E-03
57GO:0071423: malate transmembrane transport1.78E-03
58GO:0009823: cytokinin catabolic process1.78E-03
59GO:0035435: phosphate ion transmembrane transport2.19E-03
60GO:0047484: regulation of response to osmotic stress2.19E-03
61GO:0009117: nucleotide metabolic process2.19E-03
62GO:0006751: glutathione catabolic process2.19E-03
63GO:0045892: negative regulation of transcription, DNA-templated2.21E-03
64GO:0019760: glucosinolate metabolic process2.39E-03
65GO:0010016: shoot system morphogenesis2.63E-03
66GO:0071470: cellular response to osmotic stress2.63E-03
67GO:1901001: negative regulation of response to salt stress2.63E-03
68GO:0010103: stomatal complex morphogenesis3.09E-03
69GO:0032880: regulation of protein localization3.09E-03
70GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway3.09E-03
71GO:0008272: sulfate transport3.09E-03
72GO:0009690: cytokinin metabolic process3.59E-03
73GO:0009819: drought recovery3.59E-03
74GO:0006811: ion transport4.08E-03
75GO:0006997: nucleus organization4.10E-03
76GO:0006470: protein dephosphorylation4.24E-03
77GO:0010468: regulation of gene expression4.47E-03
78GO:0046685: response to arsenic-containing substance4.65E-03
79GO:0006098: pentose-phosphate shunt4.65E-03
80GO:0007346: regulation of mitotic cell cycle5.21E-03
81GO:0048268: clathrin coat assembly5.21E-03
82GO:0006631: fatty acid metabolic process5.57E-03
83GO:0048229: gametophyte development6.41E-03
84GO:0009682: induced systemic resistance6.41E-03
85GO:0010105: negative regulation of ethylene-activated signaling pathway7.04E-03
86GO:0006890: retrograde vesicle-mediated transport, Golgi to ER7.04E-03
87GO:0009611: response to wounding7.33E-03
88GO:0050826: response to freezing7.70E-03
89GO:0018107: peptidyl-threonine phosphorylation7.70E-03
90GO:2000012: regulation of auxin polar transport7.70E-03
91GO:0048467: gynoecium development8.37E-03
92GO:0002237: response to molecule of bacterial origin8.37E-03
93GO:0010030: positive regulation of seed germination9.07E-03
94GO:0070588: calcium ion transmembrane transport9.07E-03
95GO:0009833: plant-type primary cell wall biogenesis9.79E-03
96GO:0042545: cell wall modification1.13E-02
97GO:0043622: cortical microtubule organization1.13E-02
98GO:0009624: response to nematode1.16E-02
99GO:0031408: oxylipin biosynthetic process1.21E-02
100GO:0051321: meiotic cell cycle1.21E-02
101GO:0080092: regulation of pollen tube growth1.29E-02
102GO:0071215: cellular response to abscisic acid stimulus1.37E-02
103GO:0010584: pollen exine formation1.45E-02
104GO:0006468: protein phosphorylation1.53E-02
105GO:0008284: positive regulation of cell proliferation1.54E-02
106GO:0042147: retrograde transport, endosome to Golgi1.54E-02
107GO:0042631: cellular response to water deprivation1.62E-02
108GO:0009790: embryo development1.70E-02
109GO:0009958: positive gravitropism1.71E-02
110GO:0048868: pollen tube development1.71E-02
111GO:0010268: brassinosteroid homeostasis1.71E-02
112GO:0009960: endosperm development1.71E-02
113GO:0010154: fruit development1.71E-02
114GO:0009651: response to salt stress1.76E-02
115GO:0008654: phospholipid biosynthetic process1.89E-02
116GO:0010183: pollen tube guidance1.89E-02
117GO:0006891: intra-Golgi vesicle-mediated transport1.99E-02
118GO:0016132: brassinosteroid biosynthetic process1.99E-02
119GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.99E-02
120GO:0045490: pectin catabolic process2.01E-02
121GO:0042742: defense response to bacterium2.05E-02
122GO:0007165: signal transduction2.11E-02
123GO:0009737: response to abscisic acid2.20E-02
124GO:0009639: response to red or far red light2.28E-02
125GO:0016125: sterol metabolic process2.28E-02
126GO:0007166: cell surface receptor signaling pathway2.30E-02
127GO:0030154: cell differentiation2.33E-02
128GO:0009617: response to bacterium2.40E-02
129GO:0000910: cytokinesis2.48E-02
130GO:0009816: defense response to bacterium, incompatible interaction2.69E-02
131GO:0010029: regulation of seed germination2.69E-02
132GO:0016310: phosphorylation2.78E-02
133GO:0016049: cell growth3.01E-02
134GO:0048481: plant ovule development3.12E-02
135GO:0009817: defense response to fungus, incompatible interaction3.12E-02
136GO:0006970: response to osmotic stress3.35E-02
137GO:0048527: lateral root development3.46E-02
138GO:0080167: response to karrikin3.86E-02
139GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.99E-02
140GO:0006839: mitochondrial transport4.05E-02
141GO:0006897: endocytosis4.18E-02
142GO:0009640: photomorphogenesis4.42E-02
143GO:0006952: defense response4.47E-02
144GO:0045454: cell redox homeostasis4.61E-02
RankGO TermAdjusted P value
1GO:0042171: lysophosphatidic acid acyltransferase activity0.00E+00
2GO:0017048: Rho GTPase binding0.00E+00
3GO:0043565: sequence-specific DNA binding3.33E-06
4GO:0003883: CTP synthase activity1.63E-05
5GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.63E-05
6GO:0044212: transcription regulatory region DNA binding1.67E-05
7GO:0010294: abscisic acid glucosyltransferase activity4.82E-05
8GO:0052638: indole-3-butyrate beta-glucosyltransferase activity2.02E-04
9GO:0071992: phytochelatin transmembrane transporter activity2.02E-04
10GO:0004105: choline-phosphate cytidylyltransferase activity2.02E-04
11GO:0046870: cadmium ion binding2.02E-04
12GO:0015446: ATPase-coupled arsenite transmembrane transporter activity2.02E-04
13GO:0003700: transcription factor activity, sequence-specific DNA binding2.62E-04
14GO:0015117: thiosulfate transmembrane transporter activity4.52E-04
15GO:1901677: phosphate transmembrane transporter activity4.52E-04
16GO:0004385: guanylate kinase activity4.52E-04
17GO:0016629: 12-oxophytodienoate reductase activity4.52E-04
18GO:0017022: myosin binding4.52E-04
19GO:0017040: ceramidase activity4.52E-04
20GO:0008479: queuine tRNA-ribosyltransferase activity4.52E-04
21GO:0010295: (+)-abscisic acid 8'-hydroxylase activity7.36E-04
22GO:0003840: gamma-glutamyltransferase activity7.36E-04
23GO:0036374: glutathione hydrolase activity7.36E-04
24GO:0005457: GDP-fucose transmembrane transporter activity7.36E-04
25GO:0047325: inositol tetrakisphosphate 1-kinase activity7.36E-04
26GO:0005310: dicarboxylic acid transmembrane transporter activity7.36E-04
27GO:0015141: succinate transmembrane transporter activity7.36E-04
28GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity7.36E-04
29GO:0015131: oxaloacetate transmembrane transporter activity1.05E-03
30GO:0048487: beta-tubulin binding1.05E-03
31GO:0005460: UDP-glucose transmembrane transporter activity1.05E-03
32GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity1.05E-03
33GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity1.40E-03
34GO:0080043: quercetin 3-O-glucosyltransferase activity1.59E-03
35GO:0080044: quercetin 7-O-glucosyltransferase activity1.59E-03
36GO:0004623: phospholipase A2 activity1.78E-03
37GO:0005459: UDP-galactose transmembrane transporter activity1.78E-03
38GO:0019139: cytokinin dehydrogenase activity1.78E-03
39GO:0019137: thioglucosidase activity2.19E-03
40GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity2.54E-03
41GO:0015140: malate transmembrane transporter activity3.09E-03
42GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.27E-03
43GO:0016209: antioxidant activity3.59E-03
44GO:0016301: kinase activity3.86E-03
45GO:0005096: GTPase activator activity3.89E-03
46GO:0008308: voltage-gated anion channel activity4.10E-03
47GO:0008194: UDP-glycosyltransferase activity4.12E-03
48GO:0005545: 1-phosphatidylinositol binding5.80E-03
49GO:0004713: protein tyrosine kinase activity5.80E-03
50GO:0015116: sulfate transmembrane transporter activity7.04E-03
51GO:0005262: calcium channel activity7.70E-03
52GO:0008083: growth factor activity8.37E-03
53GO:0042973: glucan endo-1,3-beta-D-glucosidase activity8.37E-03
54GO:0016298: lipase activity8.43E-03
55GO:0045330: aspartyl esterase activity9.02E-03
56GO:0017025: TBP-class protein binding9.07E-03
57GO:0016874: ligase activity1.09E-02
58GO:0030599: pectinesterase activity1.09E-02
59GO:0004722: protein serine/threonine phosphatase activity1.16E-02
60GO:0035251: UDP-glucosyltransferase activity1.21E-02
61GO:0004707: MAP kinase activity1.21E-02
62GO:0003677: DNA binding1.64E-02
63GO:0030276: clathrin binding1.71E-02
64GO:0010181: FMN binding1.80E-02
65GO:0015297: antiporter activity1.92E-02
66GO:0016722: oxidoreductase activity, oxidizing metal ions2.38E-02
67GO:0016597: amino acid binding2.48E-02
68GO:0102483: scopolin beta-glucosidase activity2.90E-02
69GO:0008236: serine-type peptidase activity3.01E-02
70GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.35E-02
71GO:0043531: ADP binding3.42E-02
72GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.46E-02
73GO:0004674: protein serine/threonine kinase activity3.61E-02
74GO:0008422: beta-glucosidase activity3.93E-02
75GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting4.61E-02
76GO:0035091: phosphatidylinositol binding4.68E-02
RankGO TermAdjusted P value
1GO:0070382: exocytic vesicle2.02E-04
2GO:0030133: transport vesicle4.52E-04
3GO:0005652: nuclear lamina7.36E-04
4GO:0045177: apical part of cell1.05E-03
5GO:0005798: Golgi-associated vesicle2.19E-03
6GO:0000793: condensed chromosome2.19E-03
7GO:0000794: condensed nuclear chromosome3.09E-03
8GO:0034399: nuclear periphery3.59E-03
9GO:0005622: intracellular4.74E-03
10GO:0016604: nuclear body5.21E-03
11GO:0005938: cell cortex7.70E-03
12GO:0005769: early endosome9.79E-03
13GO:0005905: clathrin-coated pit1.21E-02
14GO:0043231: intracellular membrane-bounded organelle1.52E-02
15GO:0030136: clathrin-coated vesicle1.54E-02
16GO:0031965: nuclear membrane1.89E-02
17GO:0005615: extracellular space2.25E-02
18GO:0046658: anchored component of plasma membrane2.67E-02
19GO:0090406: pollen tube4.42E-02
20GO:0005737: cytoplasm4.73E-02
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Gene type



Gene DE type