Gene: AT3G54920
     

Gene description


TAIR ID: AT3G54920

Short description: Pectin lyase-like superfamily protein

Pathogen responsiveness: 0.03

General responsiveness: -1.36

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


cell wall modification involved in multidimensional cell growth, defense response, incompatible interaction, pectin catabolic process


GO cellular component


anchored component of plasma membrane, anchored component of membrane, plasma membrane


GO molecular function


metal ion binding, pectate lyase activity, lyase activity


Protein domain


PfamPF00544, Pectate lyase
SMARTSM00656, Amb_all

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT5G13790, AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 3

click to view PPI network

Differentially expressed condition


18 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, WT, controlCol, WT, Bg h-1.663.25E-06
GSE12856Col, ataf1, controlCol, ataf1, Bg h-1.603.32E-06
GSE17464Laer, controlLaer, Flg22 1 h-1.685.37E-04
GSE17464Laer, controlLaer, Flg22 2 h-1.861.54E-04
GSE17464Penta, controlPenta, Flg22 2 h-1.831.69E-04
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h3.062.81E-14
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h2.894.74E-14
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h3.305.58E-15
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h3.282.50E-15
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-3.327.98E-14
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h-1.723.01E-09
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-2.574.30E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-2.741.33E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-3.093.07E-13
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-4.144.20E-15
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-2.417.25E-13
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-1.623.97E-03
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h-1.761.97E-03






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