Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54920

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006695: cholesterol biosynthetic process3.65E-05
2GO:0010583: response to cyclopentenone6.11E-05
3GO:2000038: regulation of stomatal complex development1.37E-04
4GO:0015976: carbon utilization1.37E-04
5GO:0032876: negative regulation of DNA endoreduplication1.78E-04
6GO:0030308: negative regulation of cell growth1.78E-04
7GO:0009612: response to mechanical stimulus2.68E-04
8GO:2000037: regulation of stomatal complex patterning2.68E-04
9GO:0009645: response to low light intensity stimulus3.15E-04
10GO:0009610: response to symbiotic fungus3.15E-04
11GO:0009690: cytokinin metabolic process3.65E-04
12GO:0007155: cell adhesion3.65E-04
13GO:0009932: cell tip growth4.16E-04
14GO:0033384: geranyl diphosphate biosynthetic process4.68E-04
15GO:0045337: farnesyl diphosphate biosynthetic process4.68E-04
16GO:0009870: defense response signaling pathway, resistance gene-dependent5.78E-04
17GO:0043069: negative regulation of programmed cell death5.78E-04
18GO:0009089: lysine biosynthetic process via diaminopimelate6.34E-04
19GO:0019684: photosynthesis, light reaction6.34E-04
20GO:0008361: regulation of cell size6.93E-04
21GO:0009725: response to hormone7.52E-04
22GO:0019762: glucosinolate catabolic process9.38E-04
23GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.24E-03
24GO:0006284: base-excision repair1.34E-03
25GO:0000271: polysaccharide biosynthetic process1.49E-03
26GO:0042631: cellular response to water deprivation1.49E-03
27GO:0045489: pectin biosynthetic process1.56E-03
28GO:0032502: developmental process1.88E-03
29GO:0010090: trichome morphogenesis1.96E-03
30GO:0016126: sterol biosynthetic process2.30E-03
31GO:0010411: xyloglucan metabolic process2.57E-03
32GO:0016051: carbohydrate biosynthetic process3.22E-03
33GO:0006631: fatty acid metabolic process3.63E-03
34GO:0042546: cell wall biogenesis3.93E-03
35GO:0006857: oligopeptide transport4.92E-03
36GO:0071555: cell wall organization6.16E-03
37GO:0006633: fatty acid biosynthetic process8.19E-03
38GO:0005975: carbohydrate metabolic process9.35E-03
39GO:0007166: cell surface receptor signaling pathway9.60E-03
40GO:0009826: unidimensional cell growth1.16E-02
41GO:0045892: negative regulation of transcription, DNA-templated1.59E-02
42GO:0055114: oxidation-reduction process1.68E-02
43GO:0032259: methylation1.77E-02
44GO:0006281: DNA repair1.82E-02
45GO:0009416: response to light stimulus2.74E-02
46GO:0045893: positive regulation of transcription, DNA-templated3.03E-02
47GO:0009414: response to water deprivation4.46E-02
48GO:0042742: defense response to bacterium4.54E-02
49GO:0006468: protein phosphorylation4.77E-02
50GO:0009733: response to auxin4.93E-02
RankGO TermAdjusted P value
1GO:0003838: sterol 24-C-methyltransferase activity1.39E-05
2GO:0080132: fatty acid alpha-hydroxylase activity1.39E-05
3GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase3.65E-05
4GO:0016722: oxidoreductase activity, oxidizing metal ions7.58E-05
5GO:0008725: DNA-3-methyladenine glycosylase activity1.78E-04
6GO:0004337: geranyltranstransferase activity4.68E-04
7GO:0004161: dimethylallyltranstransferase activity6.34E-04
8GO:0004089: carbonate dehydratase activity7.52E-04
9GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.20E-03
10GO:0016762: xyloglucan:xyloglucosyl transferase activity1.80E-03
11GO:0016798: hydrolase activity, acting on glycosyl bonds2.57E-03
12GO:0102483: scopolin beta-glucosidase activity2.57E-03
13GO:0008422: beta-glucosidase activity3.42E-03
14GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.03E-03
15GO:0005507: copper ion binding4.34E-03
16GO:0004650: polygalacturonase activity5.62E-03
17GO:0016758: transferase activity, transferring hexosyl groups6.86E-03
18GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding7.64E-03
19GO:0004675: transmembrane receptor protein serine/threonine kinase activity8.32E-03
20GO:0004672: protein kinase activity9.04E-03
21GO:0043531: ADP binding1.27E-02
22GO:0004871: signal transducer activity1.62E-02
23GO:0016887: ATPase activity2.49E-02
24GO:0004674: protein serine/threonine kinase activity3.05E-02
25GO:0043565: sequence-specific DNA binding3.17E-02
26GO:0005506: iron ion binding4.49E-02
27GO:0003824: catalytic activity4.85E-02
28GO:0005215: transporter activity4.87E-02
RankGO TermAdjusted P value
1GO:0009505: plant-type cell wall7.82E-06
2GO:0005576: extracellular region5.18E-05
3GO:0009506: plasmodesma2.00E-04
4GO:0048046: apoplast6.75E-04
5GO:0005618: cell wall7.68E-04
6GO:0005773: vacuole6.44E-03
7GO:0046658: anchored component of plasma membrane1.06E-02
8GO:0016020: membrane1.18E-02
9GO:0009535: chloroplast thylakoid membrane1.38E-02
10GO:0031225: anchored component of membrane3.77E-02
11GO:0009570: chloroplast stroma4.05E-02
12GO:0005783: endoplasmic reticulum4.31E-02
Gene type



Gene DE type