Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54920

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901698: response to nitrogen compound0.00E+00
2GO:0000372: Group I intron splicing0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0006399: tRNA metabolic process0.00E+00
8GO:0090706: specification of plant organ position0.00E+00
9GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
10GO:0033494: ferulate metabolic process0.00E+00
11GO:0034755: iron ion transmembrane transport6.50E-06
12GO:0006000: fructose metabolic process2.27E-05
13GO:0080170: hydrogen peroxide transmembrane transport4.98E-05
14GO:0006629: lipid metabolic process1.96E-04
15GO:0043266: regulation of potassium ion transport3.81E-04
16GO:0010480: microsporocyte differentiation3.81E-04
17GO:0006723: cuticle hydrocarbon biosynthetic process3.81E-04
18GO:0000481: maturation of 5S rRNA3.81E-04
19GO:0006824: cobalt ion transport3.81E-04
20GO:2000021: regulation of ion homeostasis3.81E-04
21GO:0034628: 'de novo' NAD biosynthetic process from aspartate3.81E-04
22GO:0043609: regulation of carbon utilization3.81E-04
23GO:0034337: RNA folding3.81E-04
24GO:0010450: inflorescence meristem growth3.81E-04
25GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.81E-04
26GO:0000476: maturation of 4.5S rRNA3.81E-04
27GO:0000967: rRNA 5'-end processing3.81E-04
28GO:0070509: calcium ion import3.81E-04
29GO:0007263: nitric oxide mediated signal transduction3.81E-04
30GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.08E-04
31GO:0042335: cuticle development4.22E-04
32GO:0034220: ion transmembrane transport4.22E-04
33GO:0008610: lipid biosynthetic process4.31E-04
34GO:0032544: plastid translation5.27E-04
35GO:0006002: fructose 6-phosphate metabolic process5.27E-04
36GO:0009735: response to cytokinin6.13E-04
37GO:0048507: meristem development6.32E-04
38GO:0010206: photosystem II repair6.32E-04
39GO:0009416: response to light stimulus7.48E-04
40GO:0080151: positive regulation of salicylic acid mediated signaling pathway8.27E-04
41GO:0030388: fructose 1,6-bisphosphate metabolic process8.27E-04
42GO:0010270: photosystem II oxygen evolving complex assembly8.27E-04
43GO:0034470: ncRNA processing8.27E-04
44GO:0010275: NAD(P)H dehydrogenase complex assembly8.27E-04
45GO:0006695: cholesterol biosynthetic process8.27E-04
46GO:0016560: protein import into peroxisome matrix, docking8.27E-04
47GO:0000038: very long-chain fatty acid metabolic process9.99E-04
48GO:0015706: nitrate transport1.14E-03
49GO:0006094: gluconeogenesis1.29E-03
50GO:0043447: alkane biosynthetic process1.34E-03
51GO:0043617: cellular response to sucrose starvation1.34E-03
52GO:0006013: mannose metabolic process1.34E-03
53GO:0051176: positive regulation of sulfur metabolic process1.34E-03
54GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.34E-03
55GO:0071705: nitrogen compound transport1.34E-03
56GO:0045165: cell fate commitment1.34E-03
57GO:0010167: response to nitrate1.63E-03
58GO:0006833: water transport1.82E-03
59GO:0010025: wax biosynthetic process1.82E-03
60GO:2001141: regulation of RNA biosynthetic process1.93E-03
61GO:0006515: misfolded or incompletely synthesized protein catabolic process1.93E-03
62GO:1902476: chloride transmembrane transport1.93E-03
63GO:0034059: response to anoxia1.93E-03
64GO:0009226: nucleotide-sugar biosynthetic process1.93E-03
65GO:0007623: circadian rhythm2.50E-03
66GO:0006808: regulation of nitrogen utilization2.60E-03
67GO:0071249: cellular response to nitrate2.60E-03
68GO:0006085: acetyl-CoA biosynthetic process2.60E-03
69GO:0045727: positive regulation of translation2.60E-03
70GO:0030104: water homeostasis2.60E-03
71GO:0045038: protein import into chloroplast thylakoid membrane3.32E-03
72GO:1902183: regulation of shoot apical meristem development3.32E-03
73GO:0009435: NAD biosynthetic process3.32E-03
74GO:0010438: cellular response to sulfur starvation3.32E-03
75GO:0010158: abaxial cell fate specification3.32E-03
76GO:0009247: glycolipid biosynthetic process3.32E-03
77GO:0046785: microtubule polymerization3.32E-03
78GO:0008152: metabolic process3.86E-03
79GO:0009741: response to brassinosteroid4.00E-03
80GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.11E-03
81GO:0006828: manganese ion transport4.11E-03
82GO:0032973: amino acid export4.11E-03
83GO:0018258: protein O-linked glycosylation via hydroxyproline4.11E-03
84GO:0009759: indole glucosinolate biosynthetic process4.11E-03
85GO:0000741: karyogamy4.11E-03
86GO:0006354: DNA-templated transcription, elongation4.11E-03
87GO:0010405: arabinogalactan protein metabolic process4.11E-03
88GO:0006751: glutathione catabolic process4.11E-03
89GO:0042549: photosystem II stabilization4.11E-03
90GO:0009913: epidermal cell differentiation4.11E-03
91GO:0009826: unidimensional cell growth4.60E-03
92GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.95E-03
93GO:0006694: steroid biosynthetic process4.95E-03
94GO:0048280: vesicle fusion with Golgi apparatus4.95E-03
95GO:0030163: protein catabolic process5.64E-03
96GO:0048437: floral organ development5.85E-03
97GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.85E-03
98GO:0010444: guard mother cell differentiation5.85E-03
99GO:0051510: regulation of unidimensional cell growth5.85E-03
100GO:0050829: defense response to Gram-negative bacterium5.85E-03
101GO:0009610: response to symbiotic fungus5.85E-03
102GO:0043090: amino acid import5.85E-03
103GO:0030497: fatty acid elongation5.85E-03
104GO:0006821: chloride transport5.85E-03
105GO:0071805: potassium ion transmembrane transport6.37E-03
106GO:0019375: galactolipid biosynthetic process6.80E-03
107GO:0032508: DNA duplex unwinding6.80E-03
108GO:0010492: maintenance of shoot apical meristem identity6.80E-03
109GO:0006402: mRNA catabolic process6.80E-03
110GO:0009737: response to abscisic acid6.86E-03
111GO:0006526: arginine biosynthetic process7.80E-03
112GO:0009808: lignin metabolic process7.80E-03
113GO:0010093: specification of floral organ identity7.80E-03
114GO:0071482: cellular response to light stimulus7.80E-03
115GO:0015995: chlorophyll biosynthetic process8.44E-03
116GO:2000024: regulation of leaf development8.86E-03
117GO:0045337: farnesyl diphosphate biosynthetic process8.86E-03
118GO:0033384: geranyl diphosphate biosynthetic process8.86E-03
119GO:0000373: Group II intron splicing8.86E-03
120GO:0009060: aerobic respiration8.86E-03
121GO:0009051: pentose-phosphate shunt, oxidative branch8.86E-03
122GO:0090305: nucleic acid phosphodiester bond hydrolysis8.86E-03
123GO:0006098: pentose-phosphate shunt8.86E-03
124GO:0080144: amino acid homeostasis8.86E-03
125GO:0018298: protein-chromophore linkage9.36E-03
126GO:0000160: phosphorelay signal transduction system9.84E-03
127GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process9.96E-03
128GO:0006779: porphyrin-containing compound biosynthetic process9.96E-03
129GO:0006633: fatty acid biosynthetic process1.03E-02
130GO:0006896: Golgi to vacuole transport1.11E-02
131GO:0006782: protoporphyrinogen IX biosynthetic process1.11E-02
132GO:0055062: phosphate ion homeostasis1.11E-02
133GO:0006879: cellular iron ion homeostasis1.23E-02
134GO:0006352: DNA-templated transcription, initiation1.23E-02
135GO:0009750: response to fructose1.23E-02
136GO:0048229: gametophyte development1.23E-02
137GO:0016485: protein processing1.23E-02
138GO:0006816: calcium ion transport1.23E-02
139GO:0005983: starch catabolic process1.36E-02
140GO:0002213: defense response to insect1.36E-02
141GO:0012501: programmed cell death1.36E-02
142GO:0006468: protein phosphorylation1.42E-02
143GO:0006006: glucose metabolic process1.48E-02
144GO:2000028: regulation of photoperiodism, flowering1.48E-02
145GO:0050826: response to freezing1.48E-02
146GO:0009718: anthocyanin-containing compound biosynthetic process1.48E-02
147GO:0010075: regulation of meristem growth1.48E-02
148GO:0009767: photosynthetic electron transport chain1.48E-02
149GO:0005986: sucrose biosynthetic process1.48E-02
150GO:0030048: actin filament-based movement1.48E-02
151GO:0009640: photomorphogenesis1.54E-02
152GO:0009933: meristem structural organization1.62E-02
153GO:0009934: regulation of meristem structural organization1.62E-02
154GO:0048768: root hair cell tip growth1.62E-02
155GO:0010143: cutin biosynthetic process1.62E-02
156GO:0010207: photosystem II assembly1.62E-02
157GO:0010030: positive regulation of seed germination1.75E-02
158GO:0000162: tryptophan biosynthetic process1.89E-02
159GO:0005992: trehalose biosynthetic process2.04E-02
160GO:0009944: polarity specification of adaxial/abaxial axis2.04E-02
161GO:0009736: cytokinin-activated signaling pathway2.08E-02
162GO:0006364: rRNA processing2.08E-02
163GO:0006813: potassium ion transport2.08E-02
164GO:0016575: histone deacetylation2.19E-02
165GO:0006418: tRNA aminoacylation for protein translation2.19E-02
166GO:0006096: glycolytic process2.46E-02
167GO:0016226: iron-sulfur cluster assembly2.50E-02
168GO:0009626: plant-type hypersensitive response2.62E-02
169GO:0071369: cellular response to ethylene stimulus2.65E-02
170GO:0040007: growth2.65E-02
171GO:0042545: cell wall modification2.87E-02
172GO:0046777: protein autophosphorylation2.90E-02
173GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.98E-02
174GO:0042147: retrograde transport, endosome to Golgi2.98E-02
175GO:0009742: brassinosteroid mediated signaling pathway3.14E-02
176GO:0015979: photosynthesis3.14E-02
177GO:0042391: regulation of membrane potential3.15E-02
178GO:0010087: phloem or xylem histogenesis3.15E-02
179GO:0048653: anther development3.15E-02
180GO:0042631: cellular response to water deprivation3.15E-02
181GO:0010154: fruit development3.33E-02
182GO:0010197: polar nucleus fusion3.33E-02
183GO:0010305: leaf vascular tissue pattern formation3.33E-02
184GO:0006520: cellular amino acid metabolic process3.33E-02
185GO:0009646: response to absence of light3.50E-02
186GO:0009791: post-embryonic development3.68E-02
187GO:0006623: protein targeting to vacuole3.68E-02
188GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.86E-02
189GO:0000302: response to reactive oxygen species3.86E-02
190GO:0071554: cell wall organization or biogenesis3.86E-02
191GO:0006891: intra-Golgi vesicle-mediated transport3.86E-02
192GO:0002229: defense response to oomycetes3.86E-02
193GO:0016132: brassinosteroid biosynthetic process3.86E-02
194GO:0048235: pollen sperm cell differentiation4.05E-02
195GO:0055085: transmembrane transport4.07E-02
196GO:0042744: hydrogen peroxide catabolic process4.21E-02
197GO:0010090: trichome morphogenesis4.24E-02
198GO:0009790: embryo development4.31E-02
RankGO TermAdjusted P value
1GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
2GO:0043014: alpha-tubulin binding0.00E+00
3GO:0051721: protein phosphatase 2A binding0.00E+00
4GO:0042903: tubulin deacetylase activity0.00E+00
5GO:0004822: isoleucine-tRNA ligase activity0.00E+00
6GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
7GO:0005048: signal sequence binding0.00E+00
8GO:0050614: delta24-sterol reductase activity0.00E+00
9GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
10GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
11GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
12GO:0008987: quinolinate synthetase A activity0.00E+00
13GO:0005528: FK506 binding2.10E-07
14GO:0019843: rRNA binding3.36E-06
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.95E-06
16GO:0009671: nitrate:proton symporter activity3.81E-04
17GO:0005221: intracellular cyclic nucleotide activated cation channel activity3.81E-04
18GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.81E-04
19GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.81E-04
20GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer3.81E-04
21GO:0004033: aldo-keto reductase (NADP) activity4.31E-04
22GO:0005381: iron ion transmembrane transporter activity7.45E-04
23GO:0015929: hexosaminidase activity8.27E-04
24GO:0004563: beta-N-acetylhexosaminidase activity8.27E-04
25GO:0003839: gamma-glutamylcyclotransferase activity8.27E-04
26GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity8.27E-04
27GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.27E-04
28GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.27E-04
29GO:0015250: water channel activity9.72E-04
30GO:0008236: serine-type peptidase activity1.27E-03
31GO:0003913: DNA photolyase activity1.34E-03
32GO:0002161: aminoacyl-tRNA editing activity1.34E-03
33GO:0016805: dipeptidase activity1.34E-03
34GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.34E-03
35GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.34E-03
36GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity1.34E-03
37GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.34E-03
38GO:0004180: carboxypeptidase activity1.34E-03
39GO:0017150: tRNA dihydrouridine synthase activity1.34E-03
40GO:0050734: hydroxycinnamoyltransferase activity1.34E-03
41GO:0004252: serine-type endopeptidase activity1.79E-03
42GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.82E-03
43GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.82E-03
44GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.82E-03
45GO:0048487: beta-tubulin binding1.93E-03
46GO:0001872: (1->3)-beta-D-glucan binding1.93E-03
47GO:0003878: ATP citrate synthase activity1.93E-03
48GO:0035250: UDP-galactosyltransferase activity1.93E-03
49GO:0015079: potassium ion transmembrane transporter activity2.22E-03
50GO:0004176: ATP-dependent peptidase activity2.44E-03
51GO:0005253: anion channel activity2.60E-03
52GO:0004506: squalene monooxygenase activity2.60E-03
53GO:0001053: plastid sigma factor activity2.60E-03
54GO:0004345: glucose-6-phosphate dehydrogenase activity2.60E-03
55GO:0016836: hydro-lyase activity2.60E-03
56GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.60E-03
57GO:0016987: sigma factor activity2.60E-03
58GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.60E-03
59GO:0008374: O-acyltransferase activity3.32E-03
60GO:0009922: fatty acid elongase activity3.32E-03
61GO:0004674: protein serine/threonine kinase activity3.96E-03
62GO:0004130: cytochrome-c peroxidase activity4.11E-03
63GO:0042578: phosphoric ester hydrolase activity4.11E-03
64GO:0008200: ion channel inhibitor activity4.11E-03
65GO:0005247: voltage-gated chloride channel activity4.11E-03
66GO:2001070: starch binding4.11E-03
67GO:1990714: hydroxyproline O-galactosyltransferase activity4.11E-03
68GO:0004332: fructose-bisphosphate aldolase activity4.11E-03
69GO:0005261: cation channel activity4.95E-03
70GO:0004559: alpha-mannosidase activity4.95E-03
71GO:0005242: inward rectifier potassium channel activity4.95E-03
72GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.95E-03
73GO:0000156: phosphorelay response regulator activity5.64E-03
74GO:0009881: photoreceptor activity5.85E-03
75GO:0016597: amino acid binding6.76E-03
76GO:0008312: 7S RNA binding6.80E-03
77GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.80E-03
78GO:0004337: geranyltranstransferase activity8.86E-03
79GO:0047617: acyl-CoA hydrolase activity9.96E-03
80GO:0005384: manganese ion transmembrane transporter activity9.96E-03
81GO:0015112: nitrate transmembrane transporter activity9.96E-03
82GO:0004805: trehalose-phosphatase activity1.11E-02
83GO:0008047: enzyme activator activity1.11E-02
84GO:0004161: dimethylallyltranstransferase activity1.23E-02
85GO:0000049: tRNA binding1.36E-02
86GO:0008378: galactosyltransferase activity1.36E-02
87GO:0008081: phosphoric diester hydrolase activity1.48E-02
88GO:0004565: beta-galactosidase activity1.48E-02
89GO:0004022: alcohol dehydrogenase (NAD) activity1.48E-02
90GO:0015095: magnesium ion transmembrane transporter activity1.48E-02
91GO:0005262: calcium channel activity1.48E-02
92GO:0003735: structural constituent of ribosome1.53E-02
93GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.62E-02
94GO:0008266: poly(U) RNA binding1.62E-02
95GO:0003774: motor activity1.62E-02
96GO:0008146: sulfotransferase activity1.75E-02
97GO:0004190: aspartic-type endopeptidase activity1.75E-02
98GO:0030552: cAMP binding1.75E-02
99GO:0030553: cGMP binding1.75E-02
100GO:0016787: hydrolase activity1.79E-02
101GO:0005516: calmodulin binding1.80E-02
102GO:0004407: histone deacetylase activity2.04E-02
103GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.08E-02
104GO:0016298: lipase activity2.15E-02
105GO:0004672: protein kinase activity2.18E-02
106GO:0005216: ion channel activity2.19E-02
107GO:0003729: mRNA binding2.23E-02
108GO:0045330: aspartyl esterase activity2.30E-02
109GO:0033612: receptor serine/threonine kinase binding2.34E-02
110GO:0019706: protein-cysteine S-palmitoyltransferase activity2.34E-02
111GO:0050660: flavin adenine dinucleotide binding2.44E-02
112GO:0022891: substrate-specific transmembrane transporter activity2.65E-02
113GO:0030599: pectinesterase activity2.79E-02
114GO:0004812: aminoacyl-tRNA ligase activity2.98E-02
115GO:0016746: transferase activity, transferring acyl groups3.05E-02
116GO:0030551: cyclic nucleotide binding3.15E-02
117GO:0016301: kinase activity3.23E-02
118GO:0050662: coenzyme binding3.50E-02
119GO:0016758: transferase activity, transferring hexosyl groups3.60E-02
120GO:0016762: xyloglucan:xyloglucosyl transferase activity3.86E-02
121GO:0016829: lyase activity4.00E-02
122GO:0004518: nuclease activity4.05E-02
123GO:0008237: metallopeptidase activity4.62E-02
124GO:0046910: pectinesterase inhibitor activity4.74E-02
125GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.74E-02
126GO:0016413: O-acetyltransferase activity4.82E-02
RankGO TermAdjusted P value
1GO:0043233: organelle lumen0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009507: chloroplast4.65E-14
4GO:0009543: chloroplast thylakoid lumen2.70E-11
5GO:0009570: chloroplast stroma6.66E-10
6GO:0031977: thylakoid lumen2.43E-06
7GO:0009941: chloroplast envelope4.82E-06
8GO:0009579: thylakoid1.26E-05
9GO:0009534: chloroplast thylakoid1.31E-05
10GO:0005886: plasma membrane4.90E-05
11GO:0009535: chloroplast thylakoid membrane1.19E-04
12GO:0009344: nitrite reductase complex [NAD(P)H]3.81E-04
13GO:0000428: DNA-directed RNA polymerase complex3.81E-04
14GO:0043674: columella3.81E-04
15GO:0080085: signal recognition particle, chloroplast targeting8.27E-04
16GO:0055028: cortical microtubule8.68E-04
17GO:0005782: peroxisomal matrix1.34E-03
18GO:0000312: plastid small ribosomal subunit1.46E-03
19GO:0016020: membrane1.74E-03
20GO:0009346: citrate lyase complex1.93E-03
21GO:0009505: plant-type cell wall1.95E-03
22GO:0009654: photosystem II oxygen evolving complex2.22E-03
23GO:0034707: chloride channel complex4.11E-03
24GO:0019898: extrinsic component of membrane4.62E-03
25GO:0005762: mitochondrial large ribosomal subunit4.95E-03
26GO:0009533: chloroplast stromal thylakoid5.85E-03
27GO:0042807: central vacuole5.85E-03
28GO:0009295: nucleoid6.37E-03
29GO:0012507: ER to Golgi transport vesicle membrane6.80E-03
30GO:0030529: intracellular ribonucleoprotein complex7.16E-03
31GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.80E-03
32GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.86E-03
33GO:0015934: large ribosomal subunit1.08E-02
34GO:0016459: myosin complex1.11E-02
35GO:0009705: plant-type vacuole membrane1.17E-02
36GO:0000311: plastid large ribosomal subunit1.36E-02
37GO:0032040: small-subunit processome1.36E-02
38GO:0030659: cytoplasmic vesicle membrane1.62E-02
39GO:0030095: chloroplast photosystem II1.62E-02
40GO:0046658: anchored component of plasma membrane1.67E-02
41GO:0031225: anchored component of membrane1.91E-02
42GO:0005887: integral component of plasma membrane1.93E-02
43GO:0009532: plastid stroma2.34E-02
44GO:0009523: photosystem II3.68E-02
45GO:0071944: cell periphery4.24E-02
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Gene type



Gene DE type