GO Enrichment Analysis of Co-expressed Genes with
AT3G54920
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006223: uracil salvage | 0.00E+00 |
| 2 | GO:0010394: homogalacturonan metabolic process | 0.00E+00 |
| 3 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 4 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 5 | GO:0006633: fatty acid biosynthetic process | 3.60E-08 |
| 6 | GO:0015976: carbon utilization | 5.05E-08 |
| 7 | GO:0010411: xyloglucan metabolic process | 7.73E-06 |
| 8 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 9.17E-06 |
| 9 | GO:2000122: negative regulation of stomatal complex development | 1.44E-05 |
| 10 | GO:0010037: response to carbon dioxide | 1.44E-05 |
| 11 | GO:0042546: cell wall biogenesis | 2.87E-05 |
| 12 | GO:0010583: response to cyclopentenone | 8.41E-05 |
| 13 | GO:0010442: guard cell morphogenesis | 1.31E-04 |
| 14 | GO:0071370: cellular response to gibberellin stimulus | 1.31E-04 |
| 15 | GO:0010480: microsporocyte differentiation | 1.31E-04 |
| 16 | GO:0045488: pectin metabolic process | 1.31E-04 |
| 17 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 1.31E-04 |
| 18 | GO:0048829: root cap development | 1.92E-04 |
| 19 | GO:0009409: response to cold | 2.15E-04 |
| 20 | GO:0000038: very long-chain fatty acid metabolic process | 2.24E-04 |
| 21 | GO:0070981: L-asparagine biosynthetic process | 3.03E-04 |
| 22 | GO:0071258: cellular response to gravity | 3.03E-04 |
| 23 | GO:0006529: asparagine biosynthetic process | 3.03E-04 |
| 24 | GO:0052541: plant-type cell wall cellulose metabolic process | 3.03E-04 |
| 25 | GO:0006695: cholesterol biosynthetic process | 3.03E-04 |
| 26 | GO:0060919: auxin influx | 3.03E-04 |
| 27 | GO:0006833: water transport | 4.19E-04 |
| 28 | GO:0009826: unidimensional cell growth | 4.50E-04 |
| 29 | GO:2001295: malonyl-CoA biosynthetic process | 4.99E-04 |
| 30 | GO:0006065: UDP-glucuronate biosynthetic process | 4.99E-04 |
| 31 | GO:0003333: amino acid transmembrane transport | 5.61E-04 |
| 32 | GO:0051016: barbed-end actin filament capping | 7.14E-04 |
| 33 | GO:0034220: ion transmembrane transport | 8.42E-04 |
| 34 | GO:0042335: cuticle development | 8.42E-04 |
| 35 | GO:0045489: pectin biosynthetic process | 9.05E-04 |
| 36 | GO:0006542: glutamine biosynthetic process | 9.47E-04 |
| 37 | GO:0019676: ammonia assimilation cycle | 9.47E-04 |
| 38 | GO:0006085: acetyl-CoA biosynthetic process | 9.47E-04 |
| 39 | GO:0044206: UMP salvage | 9.47E-04 |
| 40 | GO:0043097: pyrimidine nucleoside salvage | 1.20E-03 |
| 41 | GO:0006206: pyrimidine nucleobase metabolic process | 1.47E-03 |
| 42 | GO:0055114: oxidation-reduction process | 1.52E-03 |
| 43 | GO:0009612: response to mechanical stimulus | 1.76E-03 |
| 44 | GO:0006694: steroid biosynthetic process | 1.76E-03 |
| 45 | GO:0010555: response to mannitol | 1.76E-03 |
| 46 | GO:0009645: response to low light intensity stimulus | 2.06E-03 |
| 47 | GO:0071555: cell wall organization | 2.06E-03 |
| 48 | GO:0030497: fatty acid elongation | 2.06E-03 |
| 49 | GO:0048437: floral organ development | 2.06E-03 |
| 50 | GO:0042742: defense response to bacterium | 2.06E-03 |
| 51 | GO:0010119: regulation of stomatal movement | 2.37E-03 |
| 52 | GO:0045010: actin nucleation | 2.39E-03 |
| 53 | GO:0007155: cell adhesion | 2.39E-03 |
| 54 | GO:0009642: response to light intensity | 2.39E-03 |
| 55 | GO:0006865: amino acid transport | 2.48E-03 |
| 56 | GO:0009808: lignin metabolic process | 2.73E-03 |
| 57 | GO:0009932: cell tip growth | 2.73E-03 |
| 58 | GO:0009416: response to light stimulus | 2.83E-03 |
| 59 | GO:0033384: geranyl diphosphate biosynthetic process | 3.08E-03 |
| 60 | GO:0048589: developmental growth | 3.08E-03 |
| 61 | GO:0045337: farnesyl diphosphate biosynthetic process | 3.08E-03 |
| 62 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 3.84E-03 |
| 63 | GO:0043069: negative regulation of programmed cell death | 3.84E-03 |
| 64 | GO:0006949: syncytium formation | 3.84E-03 |
| 65 | GO:0055085: transmembrane transport | 4.07E-03 |
| 66 | GO:0019684: photosynthesis, light reaction | 4.24E-03 |
| 67 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.24E-03 |
| 68 | GO:0048229: gametophyte development | 4.24E-03 |
| 69 | GO:0009773: photosynthetic electron transport in photosystem I | 4.24E-03 |
| 70 | GO:0030036: actin cytoskeleton organization | 5.08E-03 |
| 71 | GO:0010075: regulation of meristem growth | 5.08E-03 |
| 72 | GO:0009934: regulation of meristem structural organization | 5.52E-03 |
| 73 | GO:0010143: cutin biosynthetic process | 5.52E-03 |
| 74 | GO:0006541: glutamine metabolic process | 5.52E-03 |
| 75 | GO:0005985: sucrose metabolic process | 5.97E-03 |
| 76 | GO:0010025: wax biosynthetic process | 6.43E-03 |
| 77 | GO:0006636: unsaturated fatty acid biosynthetic process | 6.43E-03 |
| 78 | GO:0006071: glycerol metabolic process | 6.43E-03 |
| 79 | GO:0019344: cysteine biosynthetic process | 6.91E-03 |
| 80 | GO:0009116: nucleoside metabolic process | 6.91E-03 |
| 81 | GO:0007010: cytoskeleton organization | 6.91E-03 |
| 82 | GO:0010026: trichome differentiation | 7.40E-03 |
| 83 | GO:0007017: microtubule-based process | 7.40E-03 |
| 84 | GO:0040007: growth | 8.95E-03 |
| 85 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 8.95E-03 |
| 86 | GO:0006284: base-excision repair | 9.49E-03 |
| 87 | GO:0009734: auxin-activated signaling pathway | 9.65E-03 |
| 88 | GO:0006468: protein phosphorylation | 1.02E-02 |
| 89 | GO:0000271: polysaccharide biosynthetic process | 1.06E-02 |
| 90 | GO:0080022: primary root development | 1.06E-02 |
| 91 | GO:0000413: protein peptidyl-prolyl isomerization | 1.06E-02 |
| 92 | GO:0048653: anther development | 1.06E-02 |
| 93 | GO:0045490: pectin catabolic process | 1.10E-02 |
| 94 | GO:0009741: response to brassinosteroid | 1.12E-02 |
| 95 | GO:0009735: response to cytokinin | 1.16E-02 |
| 96 | GO:0009646: response to absence of light | 1.18E-02 |
| 97 | GO:0016132: brassinosteroid biosynthetic process | 1.30E-02 |
| 98 | GO:0071554: cell wall organization or biogenesis | 1.30E-02 |
| 99 | GO:0002229: defense response to oomycetes | 1.30E-02 |
| 100 | GO:0032502: developmental process | 1.36E-02 |
| 101 | GO:1901657: glycosyl compound metabolic process | 1.42E-02 |
| 102 | GO:0009828: plant-type cell wall loosening | 1.49E-02 |
| 103 | GO:0016126: sterol biosynthetic process | 1.68E-02 |
| 104 | GO:0009627: systemic acquired resistance | 1.82E-02 |
| 105 | GO:0009817: defense response to fungus, incompatible interaction | 2.03E-02 |
| 106 | GO:0048767: root hair elongation | 2.11E-02 |
| 107 | GO:0010311: lateral root formation | 2.11E-02 |
| 108 | GO:0009834: plant-type secondary cell wall biogenesis | 2.18E-02 |
| 109 | GO:0007568: aging | 2.25E-02 |
| 110 | GO:0016051: carbohydrate biosynthetic process | 2.41E-02 |
| 111 | GO:0045454: cell redox homeostasis | 2.53E-02 |
| 112 | GO:0006631: fatty acid metabolic process | 2.72E-02 |
| 113 | GO:0009926: auxin polar transport | 2.88E-02 |
| 114 | GO:0006629: lipid metabolic process | 3.12E-02 |
| 115 | GO:0009664: plant-type cell wall organization | 3.39E-02 |
| 116 | GO:0042538: hyperosmotic salinity response | 3.39E-02 |
| 117 | GO:0009733: response to auxin | 3.63E-02 |
| 118 | GO:0009651: response to salt stress | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050613: delta14-sterol reductase activity | 0.00E+00 |
| 2 | GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity | 0.00E+00 |
| 3 | GO:0050614: delta24-sterol reductase activity | 0.00E+00 |
| 4 | GO:0016631: enoyl-[acyl-carrier-protein] reductase activity | 0.00E+00 |
| 5 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 2.40E-06 |
| 6 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 7.73E-06 |
| 7 | GO:0004089: carbonate dehydratase activity | 8.19E-06 |
| 8 | GO:0010328: auxin influx transmembrane transporter activity | 1.44E-05 |
| 9 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 1.50E-05 |
| 10 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 1.50E-05 |
| 11 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 1.50E-05 |
| 12 | GO:0009922: fatty acid elongase activity | 2.35E-05 |
| 13 | GO:0051920: peroxiredoxin activity | 4.98E-05 |
| 14 | GO:0016209: antioxidant activity | 8.68E-05 |
| 15 | GO:0005200: structural constituent of cytoskeleton | 1.11E-04 |
| 16 | GO:0080132: fatty acid alpha-hydroxylase activity | 1.31E-04 |
| 17 | GO:0004071: aspartate-ammonia ligase activity | 1.31E-04 |
| 18 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 2.00E-04 |
| 19 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.03E-04 |
| 20 | GO:0042389: omega-3 fatty acid desaturase activity | 3.03E-04 |
| 21 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 3.03E-04 |
| 22 | GO:0004075: biotin carboxylase activity | 4.99E-04 |
| 23 | GO:0003979: UDP-glucose 6-dehydrogenase activity | 4.99E-04 |
| 24 | GO:0050734: hydroxycinnamoyltransferase activity | 4.99E-04 |
| 25 | GO:0004148: dihydrolipoyl dehydrogenase activity | 4.99E-04 |
| 26 | GO:0030570: pectate lyase activity | 6.66E-04 |
| 27 | GO:0003878: ATP citrate synthase activity | 7.14E-04 |
| 28 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 7.14E-04 |
| 29 | GO:0004845: uracil phosphoribosyltransferase activity | 9.47E-04 |
| 30 | GO:0004356: glutamate-ammonia ligase activity | 1.20E-03 |
| 31 | GO:0003989: acetyl-CoA carboxylase activity | 1.20E-03 |
| 32 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.20E-03 |
| 33 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.41E-03 |
| 34 | GO:0008200: ion channel inhibitor activity | 1.47E-03 |
| 35 | GO:0015250: water channel activity | 1.58E-03 |
| 36 | GO:0004849: uridine kinase activity | 1.76E-03 |
| 37 | GO:0004564: beta-fructofuranosidase activity | 2.39E-03 |
| 38 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.73E-03 |
| 39 | GO:0004337: geranyltranstransferase activity | 3.08E-03 |
| 40 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 3.08E-03 |
| 41 | GO:0004575: sucrose alpha-glucosidase activity | 3.46E-03 |
| 42 | GO:0015293: symporter activity | 3.73E-03 |
| 43 | GO:0004674: protein serine/threonine kinase activity | 3.85E-03 |
| 44 | GO:0004672: protein kinase activity | 4.04E-03 |
| 45 | GO:0004161: dimethylallyltranstransferase activity | 4.24E-03 |
| 46 | GO:0015171: amino acid transmembrane transporter activity | 4.95E-03 |
| 47 | GO:0004650: polygalacturonase activity | 5.80E-03 |
| 48 | GO:0033612: receptor serine/threonine kinase binding | 7.91E-03 |
| 49 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 7.91E-03 |
| 50 | GO:0019843: rRNA binding | 7.95E-03 |
| 51 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 8.42E-03 |
| 52 | GO:0005215: transporter activity | 9.62E-03 |
| 53 | GO:0016491: oxidoreductase activity | 1.25E-02 |
| 54 | GO:0051015: actin filament binding | 1.42E-02 |
| 55 | GO:0016413: O-acetyltransferase activity | 1.62E-02 |
| 56 | GO:0004601: peroxidase activity | 1.71E-02 |
| 57 | GO:0102483: scopolin beta-glucosidase activity | 1.89E-02 |
| 58 | GO:0005507: copper ion binding | 2.02E-02 |
| 59 | GO:0005516: calmodulin binding | 2.17E-02 |
| 60 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 2.25E-02 |
| 61 | GO:0052689: carboxylic ester hydrolase activity | 2.34E-02 |
| 62 | GO:0008422: beta-glucosidase activity | 2.56E-02 |
| 63 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.05E-02 |
| 64 | GO:0043621: protein self-association | 3.05E-02 |
| 65 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.22E-02 |
| 66 | GO:0051287: NAD binding | 3.30E-02 |
| 67 | GO:0022857: transmembrane transporter activity | 4.39E-02 |
| 68 | GO:0003779: actin binding | 4.48E-02 |
| 69 | GO:0016746: transferase activity, transferring acyl groups | 4.67E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005835: fatty acid synthase complex | 0.00E+00 |
| 2 | GO:0048046: apoplast | 7.09E-13 |
| 3 | GO:0005618: cell wall | 1.84E-08 |
| 4 | GO:0009570: chloroplast stroma | 2.54E-06 |
| 5 | GO:0009941: chloroplast envelope | 2.97E-06 |
| 6 | GO:0009505: plant-type cell wall | 3.76E-06 |
| 7 | GO:0031225: anchored component of membrane | 5.65E-06 |
| 8 | GO:0005886: plasma membrane | 1.80E-05 |
| 9 | GO:0009506: plasmodesma | 1.82E-05 |
| 10 | GO:0046658: anchored component of plasma membrane | 4.14E-05 |
| 11 | GO:0010319: stromule | 1.11E-04 |
| 12 | GO:0045298: tubulin complex | 1.34E-04 |
| 13 | GO:0009579: thylakoid | 1.60E-04 |
| 14 | GO:0042170: plastid membrane | 3.03E-04 |
| 15 | GO:0016020: membrane | 3.72E-04 |
| 16 | GO:0005576: extracellular region | 6.58E-04 |
| 17 | GO:0005775: vacuolar lumen | 7.14E-04 |
| 18 | GO:0009346: citrate lyase complex | 7.14E-04 |
| 19 | GO:0009535: chloroplast thylakoid membrane | 2.45E-03 |
| 20 | GO:0022626: cytosolic ribosome | 2.65E-03 |
| 21 | GO:0009507: chloroplast | 2.77E-03 |
| 22 | GO:0031977: thylakoid lumen | 3.07E-03 |
| 23 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.08E-03 |
| 24 | GO:0000139: Golgi membrane | 3.50E-03 |
| 25 | GO:0030659: cytoplasmic vesicle membrane | 5.52E-03 |
| 26 | GO:0005774: vacuolar membrane | 5.77E-03 |
| 27 | GO:0030176: integral component of endoplasmic reticulum membrane | 5.97E-03 |
| 28 | GO:0005875: microtubule associated complex | 6.43E-03 |
| 29 | GO:0016021: integral component of membrane | 9.02E-03 |
| 30 | GO:0005829: cytosol | 1.22E-02 |
| 31 | GO:0005773: vacuole | 1.32E-02 |
| 32 | GO:0005789: endoplasmic reticulum membrane | 1.57E-02 |
| 33 | GO:0000325: plant-type vacuole | 2.25E-02 |
| 34 | GO:0005802: trans-Golgi network | 2.35E-02 |
| 35 | GO:0031902: late endosome membrane | 2.72E-02 |
| 36 | GO:0005768: endosome | 2.76E-02 |
| 37 | GO:0005856: cytoskeleton | 3.13E-02 |
| 38 | GO:0005887: integral component of plasma membrane | 4.23E-02 |
| 39 | GO:0009706: chloroplast inner membrane | 4.58E-02 |