Gene: AT3G54890
     

Gene description


TAIR ID: AT3G54890

Short description: photosystem I light harvesting complex gene 1

Pathogen responsiveness: -0.02

General responsiveness: 3.05

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G036880  

Wheat: No orthologous gene

GO biological process


photosynthesis, protein-chromophore linkage, light harvesting in photosystem I, light harvesting, response to cold, response to high light intensity, response to blue light, response to low light intensity stimulus, response to red light, response to far red light


GO cellular component


photosystem I, plastoglobule, chloroplast envelope, chloroplast thylakoid membrane, chloroplast, chloroplast thylakoid, membrane, thylakoid, integral component of membrane, photosystem II, light-harvesting complex


GO molecular function


protein binding, metal ion binding, chlorophyll binding, pigment binding


Protein domain


PfamPF00504, Chlorophyll A-B binding protein

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT2G36270, AT5G11260, AT1G24260, AT1G32640, AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 2

click to view PPI network

Differentially expressed condition


17 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-2.545.42E-07
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.761.51E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-2.845.73E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-5.733.91E-15
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.681.21E-07
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-3.661.37E-12
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_24 h1.561.30E-02
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-2.225.83E-03
GSE56094Col, WT, control 10 hCol, WT, hrpA- 10 h-1.519.67E-04
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-2.111.37E-06
GSE56094Col, WT, control 11 hCol, WT, hrpA- 11 h-1.731.31E-04
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h-2.541.00E-08
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h-3.241.42E-12
GSE56094Col, WT, control 13 hCol, WT, hrpA- 13 h-1.626.23E-04
GSE56094Col, WT, control 8 hCol, WT, hrpA- 8 h-1.585.07E-04
GSE56094Col, WT, control 9 hCol, WT, PstDC3000 9 h-1.747.78E-05
GSE56094Col, WT, control 9 hCol, WT, hrpA- 9 h-2.412.90E-07






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