co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061635: regulation of protein complex stability	0.00E+00
2	GO:0016118: carotenoid catabolic process	0.00E+00
3	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
4	GO:0015979: photosynthesis	3.16E-12
5	GO:0009735: response to cytokinin	5.71E-08
6	GO:0009768: photosynthesis, light harvesting in photosystem I	3.93E-07
7	GO:0032544: plastid translation	1.56E-06
8	GO:0090391: granum assembly	3.35E-06
9	GO:0009773: photosynthetic electron transport in photosystem I	5.28E-06
10	GO:0015995: chlorophyll biosynthetic process	8.09E-06
11	GO:0009767: photosynthetic electron transport chain	8.49E-06
12	GO:0018298: protein-chromophore linkage	1.01E-05
13	GO:0010207: photosystem II assembly	1.05E-05
14	GO:0010190: cytochrome b6f complex assembly	3.63E-05
15	GO:0010196: nonphotochemical quenching	6.86E-05
16	GO:0009645: response to low light intensity stimulus	6.86E-05
17	GO:0080093: regulation of photorespiration	1.33E-04
18	GO:0031998: regulation of fatty acid beta-oxidation	1.33E-04
19	GO:0006412: translation	1.35E-04
20	GO:0006810: transport	2.76E-04
21	GO:0071457: cellular response to ozone	3.07E-04
22	GO:0016124: xanthophyll catabolic process	3.07E-04
23	GO:0016121: carotene catabolic process	3.07E-04
24	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.07E-04
25	GO:0019253: reductive pentose-phosphate cycle	3.42E-04
26	GO:0006518: peptide metabolic process	5.06E-04
27	GO:0042254: ribosome biogenesis	5.08E-04
28	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	7.24E-04
29	GO:0071484: cellular response to light intensity	7.24E-04
30	GO:0019464: glycine decarboxylation via glycine cleavage system	9.59E-04
31	GO:0015994: chlorophyll metabolic process	9.59E-04
32	GO:0006536: glutamate metabolic process	9.59E-04
33	GO:0010600: regulation of auxin biosynthetic process	9.59E-04
34	GO:0006546: glycine catabolic process	9.59E-04
35	GO:0071486: cellular response to high light intensity	9.59E-04
36	GO:0071493: cellular response to UV-B	1.21E-03
37	GO:0006656: phosphatidylcholine biosynthetic process	1.21E-03
38	GO:0043097: pyrimidine nucleoside salvage	1.21E-03
39	GO:0006097: glyoxylate cycle	1.21E-03
40	GO:0009107: lipoate biosynthetic process	1.21E-03
41	GO:0006206: pyrimidine nucleobase metabolic process	1.49E-03
42	GO:0050665: hydrogen peroxide biosynthetic process	1.49E-03
43	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.78E-03
44	GO:0010189: vitamin E biosynthetic process	1.78E-03
45	GO:0009854: oxidative photosynthetic carbon pathway	1.78E-03
46	GO:1900057: positive regulation of leaf senescence	2.09E-03
47	GO:0010218: response to far red light	2.30E-03
48	GO:0010928: regulation of auxin mediated signaling pathway	2.42E-03
49	GO:0009642: response to light intensity	2.42E-03
50	GO:0009637: response to blue light	2.64E-03
51	GO:0019430: removal of superoxide radicals	2.77E-03
52	GO:0009416: response to light stimulus	2.93E-03
53	GO:0009245: lipid A biosynthetic process	3.13E-03
54	GO:0010206: photosystem II repair	3.13E-03
55	GO:0006783: heme biosynthetic process	3.13E-03
56	GO:0010114: response to red light	3.40E-03
57	GO:0006779: porphyrin-containing compound biosynthetic process	3.50E-03
58	GO:0009644: response to high light intensity	3.67E-03
59	GO:0006782: protoporphyrinogen IX biosynthetic process	3.89E-03
60	GO:0043085: positive regulation of catalytic activity	4.30E-03
61	GO:0018119: peptidyl-cysteine S-nitrosylation	4.30E-03
62	GO:0006807: nitrogen compound metabolic process	5.15E-03
63	GO:0006108: malate metabolic process	5.15E-03
64	GO:0006006: glucose metabolic process	5.15E-03
65	GO:0006094: gluconeogenesis	5.15E-03
66	GO:0006096: glycolytic process	5.39E-03
67	GO:0042742: defense response to bacterium	8.53E-03
68	GO:0006979: response to oxidative stress	8.63E-03
69	GO:0055114: oxidation-reduction process	8.76E-03
70	GO:0009693: ethylene biosynthetic process	9.08E-03
71	GO:0042335: cuticle development	1.08E-02
72	GO:0000413: protein peptidyl-prolyl isomerization	1.08E-02
73	GO:0071472: cellular response to salt stress	1.13E-02
74	GO:0006662: glycerol ether metabolic process	1.13E-02
75	GO:0006814: sodium ion transport	1.19E-02
76	GO:0009409: response to cold	1.35E-02
77	GO:0010583: response to cyclopentenone	1.38E-02
78	GO:0010027: thylakoid membrane organization	1.71E-02
79	GO:0009627: systemic acquired resistance	1.85E-02
80	GO:0006950: response to stress	1.92E-02
81	GO:0016311: dephosphorylation	1.99E-02
82	GO:0080167: response to karrikin	2.16E-02
83	GO:0007568: aging	2.29E-02
84	GO:0009853: photorespiration	2.44E-02
85	GO:0034599: cellular response to oxidative stress	2.52E-02
86	GO:0006099: tricarboxylic acid cycle	2.52E-02
87	GO:0045454: cell redox homeostasis	2.59E-02
88	GO:0030001: metal ion transport	2.68E-02
89	GO:0006869: lipid transport	2.84E-02
90	GO:0032259: methylation	3.06E-02
91	GO:0006812: cation transport	3.44E-02
92	GO:0006364: rRNA processing	3.62E-02
93	GO:0009585: red, far-red light phototransduction	3.62E-02
94	GO:0009624: response to nematode	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
3	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
4	GO:0045550: geranylgeranyl reductase activity	0.00E+00
5	GO:0008974: phosphoribulokinase activity	0.00E+00
6	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
7	GO:0046408: chlorophyll synthetase activity	0.00E+00
8	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
9	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
10	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
11	GO:0031409: pigment binding	2.42E-07
12	GO:0003735: structural constituent of ribosome	3.28E-06
13	GO:0016168: chlorophyll binding	6.41E-06
14	GO:0019843: rRNA binding	1.04E-05
15	GO:0009496: plastoquinol--plastocyanin reductase activity	1.33E-04
16	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	1.33E-04
17	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.07E-04
18	GO:0016630: protochlorophyllide reductase activity	3.07E-04
19	GO:0000234: phosphoethanolamine N-methyltransferase activity	3.07E-04
20	GO:0008883: glutamyl-tRNA reductase activity	3.07E-04
21	GO:0047746: chlorophyllase activity	3.07E-04
22	GO:0051537: 2 iron, 2 sulfur cluster binding	4.23E-04
23	GO:0016992: lipoate synthase activity	5.06E-04
24	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	5.06E-04
25	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.06E-04
26	GO:0004375: glycine dehydrogenase (decarboxylating) activity	7.24E-04
27	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.24E-04
28	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	7.24E-04
29	GO:0008097: 5S rRNA binding	7.24E-04
30	GO:0004351: glutamate decarboxylase activity	7.24E-04
31	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	7.24E-04
32	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	7.24E-04
33	GO:0008453: alanine-glyoxylate transaminase activity	9.59E-04
34	GO:0008891: glycolate oxidase activity	9.59E-04
35	GO:0048038: quinone binding	1.13E-03
36	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.21E-03
37	GO:0004784: superoxide dismutase activity	1.49E-03
38	GO:0031177: phosphopantetheine binding	1.49E-03
39	GO:0016615: malate dehydrogenase activity	1.49E-03
40	GO:0004332: fructose-bisphosphate aldolase activity	1.49E-03
41	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.78E-03
42	GO:0030060: L-malate dehydrogenase activity	1.78E-03
43	GO:0004849: uridine kinase activity	1.78E-03
44	GO:0000035: acyl binding	1.78E-03
45	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.42E-03
46	GO:0003993: acid phosphatase activity	2.76E-03
47	GO:0050661: NADP binding	3.00E-03
48	GO:0016491: oxidoreductase activity	3.46E-03
49	GO:0030234: enzyme regulator activity	3.89E-03
50	GO:0008047: enzyme activator activity	3.89E-03
51	GO:0005315: inorganic phosphate transmembrane transporter activity	5.15E-03
52	GO:0031072: heat shock protein binding	5.15E-03
53	GO:0015035: protein disulfide oxidoreductase activity	6.67E-03
54	GO:0009055: electron carrier activity	7.01E-03
55	GO:0043424: protein histidine kinase binding	7.51E-03
56	GO:0008514: organic anion transmembrane transporter activity	9.63E-03
57	GO:0047134: protein-disulfide reductase activity	1.02E-02
58	GO:0010181: FMN binding	1.19E-02
59	GO:0004791: thioredoxin-disulfide reductase activity	1.19E-02
60	GO:0042802: identical protein binding	1.43E-02
61	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.44E-02
62	GO:0043531: ADP binding	1.91E-02
63	GO:0004222: metalloendopeptidase activity	2.21E-02
64	GO:0003746: translation elongation factor activity	2.44E-02
65	GO:0005515: protein binding	2.58E-02
66	GO:0005509: calcium ion binding	2.92E-02
67	GO:0015293: symporter activity	3.18E-02
68	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.26E-02
69	GO:0051287: NAD binding	3.35E-02
70	GO:0008289: lipid binding	4.42E-02
71	GO:0051082: unfolded protein binding	4.65E-02