GO Enrichment Analysis of Co-expressed Genes with
AT3G54890
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1903508: positive regulation of nucleic acid-templated transcription | 0.00E+00 |
| 2 | GO:1903428: positive regulation of reactive oxygen species biosynthetic process | 0.00E+00 |
| 3 | GO:0010378: temperature compensation of the circadian clock | 0.00E+00 |
| 4 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.36E-23 |
| 5 | GO:0015979: photosynthesis | 3.48E-15 |
| 6 | GO:0018298: protein-chromophore linkage | 8.93E-15 |
| 7 | GO:0010218: response to far red light | 1.43E-08 |
| 8 | GO:0009769: photosynthesis, light harvesting in photosystem II | 7.93E-08 |
| 9 | GO:0009645: response to low light intensity stimulus | 7.93E-08 |
| 10 | GO:0009637: response to blue light | 1.29E-06 |
| 11 | GO:0010114: response to red light | 2.28E-06 |
| 12 | GO:0009644: response to high light intensity | 2.70E-06 |
| 13 | GO:0010600: regulation of auxin biosynthetic process | 3.22E-06 |
| 14 | GO:0009416: response to light stimulus | 4.37E-06 |
| 15 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 1.21E-05 |
| 16 | GO:0010196: nonphotochemical quenching | 1.67E-05 |
| 17 | GO:0010928: regulation of auxin mediated signaling pathway | 2.21E-05 |
| 18 | GO:0007623: circadian rhythm | 2.82E-05 |
| 19 | GO:0015995: chlorophyll biosynthetic process | 2.88E-05 |
| 20 | GO:0015812: gamma-aminobutyric acid transport | 5.48E-05 |
| 21 | GO:0032958: inositol phosphate biosynthetic process | 5.48E-05 |
| 22 | GO:0009585: red, far-red light phototransduction | 1.13E-04 |
| 23 | GO:0051170: nuclear import | 1.34E-04 |
| 24 | GO:0048511: rhythmic process | 1.74E-04 |
| 25 | GO:0003333: amino acid transmembrane transport | 1.74E-04 |
| 26 | GO:0010017: red or far-red light signaling pathway | 1.91E-04 |
| 27 | GO:1902448: positive regulation of shade avoidance | 2.28E-04 |
| 28 | GO:0006598: polyamine catabolic process | 2.28E-04 |
| 29 | GO:0006020: inositol metabolic process | 3.33E-04 |
| 30 | GO:0044211: CTP salvage | 3.33E-04 |
| 31 | GO:2000306: positive regulation of photomorphogenesis | 4.45E-04 |
| 32 | GO:0044206: UMP salvage | 4.45E-04 |
| 33 | GO:0015846: polyamine transport | 4.45E-04 |
| 34 | GO:0030104: water homeostasis | 4.45E-04 |
| 35 | GO:0048578: positive regulation of long-day photoperiodism, flowering | 5.66E-04 |
| 36 | GO:0043097: pyrimidine nucleoside salvage | 5.66E-04 |
| 37 | GO:0045962: positive regulation of development, heterochronic | 6.92E-04 |
| 38 | GO:0006206: pyrimidine nucleobase metabolic process | 6.92E-04 |
| 39 | GO:0009635: response to herbicide | 6.92E-04 |
| 40 | GO:0000160: phosphorelay signal transduction system | 7.02E-04 |
| 41 | GO:0009861: jasmonic acid and ethylene-dependent systemic resistance | 8.25E-04 |
| 42 | GO:0080167: response to karrikin | 8.76E-04 |
| 43 | GO:0010161: red light signaling pathway | 9.62E-04 |
| 44 | GO:0051510: regulation of unidimensional cell growth | 9.62E-04 |
| 45 | GO:0042542: response to hydrogen peroxide | 1.03E-03 |
| 46 | GO:0009640: photomorphogenesis | 1.07E-03 |
| 47 | GO:0009704: de-etiolation | 1.11E-03 |
| 48 | GO:0010099: regulation of photomorphogenesis | 1.26E-03 |
| 49 | GO:0009827: plant-type cell wall modification | 1.26E-03 |
| 50 | GO:0090333: regulation of stomatal closure | 1.41E-03 |
| 51 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 1.58E-03 |
| 52 | GO:0009641: shade avoidance | 1.75E-03 |
| 53 | GO:0006355: regulation of transcription, DNA-templated | 1.79E-03 |
| 54 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.93E-03 |
| 55 | GO:0009409: response to cold | 2.18E-03 |
| 56 | GO:0018107: peptidyl-threonine phosphorylation | 2.30E-03 |
| 57 | GO:0009718: anthocyanin-containing compound biosynthetic process | 2.30E-03 |
| 58 | GO:0009767: photosynthetic electron transport chain | 2.30E-03 |
| 59 | GO:0009266: response to temperature stimulus | 2.49E-03 |
| 60 | GO:0010207: photosystem II assembly | 2.49E-03 |
| 61 | GO:0090351: seedling development | 2.70E-03 |
| 62 | GO:0006351: transcription, DNA-templated | 3.51E-03 |
| 63 | GO:0009269: response to desiccation | 3.54E-03 |
| 64 | GO:0009693: ethylene biosynthetic process | 4.00E-03 |
| 65 | GO:0071215: cellular response to abscisic acid stimulus | 4.00E-03 |
| 66 | GO:0009741: response to brassinosteroid | 4.96E-03 |
| 67 | GO:0007018: microtubule-based movement | 5.22E-03 |
| 68 | GO:0006814: sodium ion transport | 5.22E-03 |
| 69 | GO:0042752: regulation of circadian rhythm | 5.22E-03 |
| 70 | GO:0009791: post-embryonic development | 5.48E-03 |
| 71 | GO:0000302: response to reactive oxygen species | 5.74E-03 |
| 72 | GO:1901657: glycosyl compound metabolic process | 6.27E-03 |
| 73 | GO:0016126: sterol biosynthetic process | 7.40E-03 |
| 74 | GO:0045892: negative regulation of transcription, DNA-templated | 7.95E-03 |
| 75 | GO:0048573: photoperiodism, flowering | 8.29E-03 |
| 76 | GO:0009817: defense response to fungus, incompatible interaction | 8.91E-03 |
| 77 | GO:0010119: regulation of stomatal movement | 9.86E-03 |
| 78 | GO:0006865: amino acid transport | 1.02E-02 |
| 79 | GO:0051707: response to other organism | 1.26E-02 |
| 80 | GO:0008643: carbohydrate transport | 1.33E-02 |
| 81 | GO:0009965: leaf morphogenesis | 1.37E-02 |
| 82 | GO:0055114: oxidation-reduction process | 1.47E-02 |
| 83 | GO:0009908: flower development | 1.55E-02 |
| 84 | GO:0009735: response to cytokinin | 1.57E-02 |
| 85 | GO:0009909: regulation of flower development | 1.67E-02 |
| 86 | GO:0009611: response to wounding | 1.76E-02 |
| 87 | GO:0035556: intracellular signal transduction | 1.81E-02 |
| 88 | GO:0009737: response to abscisic acid | 1.86E-02 |
| 89 | GO:0009624: response to nematode | 1.99E-02 |
| 90 | GO:0018105: peptidyl-serine phosphorylation | 2.04E-02 |
| 91 | GO:0009742: brassinosteroid mediated signaling pathway | 2.08E-02 |
| 92 | GO:0009058: biosynthetic process | 2.43E-02 |
| 93 | GO:0010228: vegetative to reproductive phase transition of meristem | 3.04E-02 |
| 94 | GO:0010468: regulation of gene expression | 3.34E-02 |
| 95 | GO:0030154: cell differentiation | 3.79E-02 |
| 96 | GO:0009826: unidimensional cell growth | 3.91E-02 |
| 97 | GO:0009658: chloroplast organization | 4.01E-02 |
| 98 | GO:0009723: response to ethylene | 4.45E-02 |
| 99 | GO:0048366: leaf development | 4.51E-02 |
| 100 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.79E-02 |
| 101 | GO:0044550: secondary metabolite biosynthetic process | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 2 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 3 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 4 | GO:0030504: inorganic diphosphate transmembrane transporter activity | 0.00E+00 |
| 5 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 6 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 7 | GO:0031409: pigment binding | 8.95E-21 |
| 8 | GO:0016168: chlorophyll binding | 2.06E-17 |
| 9 | GO:0033857: diphosphoinositol-pentakisphosphate kinase activity | 5.48E-05 |
| 10 | GO:0000829: inositol heptakisphosphate kinase activity | 5.48E-05 |
| 11 | GO:0080079: cellobiose glucosidase activity | 5.48E-05 |
| 12 | GO:0000828: inositol hexakisphosphate kinase activity | 5.48E-05 |
| 13 | GO:0015185: gamma-aminobutyric acid transmembrane transporter activity | 5.48E-05 |
| 14 | GO:0080045: quercetin 3'-O-glucosyltransferase activity | 1.34E-04 |
| 15 | GO:0016630: protochlorophyllide reductase activity | 1.34E-04 |
| 16 | GO:0015180: L-alanine transmembrane transporter activity | 1.34E-04 |
| 17 | GO:0046592: polyamine oxidase activity | 2.28E-04 |
| 18 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 2.28E-04 |
| 19 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.63E-04 |
| 20 | GO:0015189: L-lysine transmembrane transporter activity | 3.33E-04 |
| 21 | GO:0015181: arginine transmembrane transporter activity | 3.33E-04 |
| 22 | GO:0015203: polyamine transmembrane transporter activity | 3.33E-04 |
| 23 | GO:0015297: antiporter activity | 3.65E-04 |
| 24 | GO:0000156: phosphorelay response regulator activity | 4.10E-04 |
| 25 | GO:0004845: uracil phosphoribosyltransferase activity | 4.45E-04 |
| 26 | GO:0005313: L-glutamate transmembrane transporter activity | 4.45E-04 |
| 27 | GO:0004506: squalene monooxygenase activity | 4.45E-04 |
| 28 | GO:0080046: quercetin 4'-O-glucosyltransferase activity | 6.92E-04 |
| 29 | GO:0004849: uridine kinase activity | 8.25E-04 |
| 30 | GO:0046872: metal ion binding | 1.08E-03 |
| 31 | GO:0015293: symporter activity | 1.19E-03 |
| 32 | GO:0000989: transcription factor activity, transcription factor binding | 1.41E-03 |
| 33 | GO:0015171: amino acid transmembrane transporter activity | 1.57E-03 |
| 34 | GO:0015174: basic amino acid transmembrane transporter activity | 1.58E-03 |
| 35 | GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity | 1.75E-03 |
| 36 | GO:0005515: protein binding | 1.76E-03 |
| 37 | GO:0047372: acylglycerol lipase activity | 1.93E-03 |
| 38 | GO:0005315: inorganic phosphate transmembrane transporter activity | 2.30E-03 |
| 39 | GO:0004565: beta-galactosidase activity | 2.30E-03 |
| 40 | GO:0004022: alcohol dehydrogenase (NAD) activity | 2.30E-03 |
| 41 | GO:0008131: primary amine oxidase activity | 2.49E-03 |
| 42 | GO:0003712: transcription cofactor activity | 2.70E-03 |
| 43 | GO:0004707: MAP kinase activity | 3.54E-03 |
| 44 | GO:0008514: organic anion transmembrane transporter activity | 4.23E-03 |
| 45 | GO:0004497: monooxygenase activity | 6.54E-03 |
| 46 | GO:0005506: iron ion binding | 6.98E-03 |
| 47 | GO:0102483: scopolin beta-glucosidase activity | 8.29E-03 |
| 48 | GO:0008422: beta-glucosidase activity | 1.12E-02 |
| 49 | GO:0004672: protein kinase activity | 1.16E-02 |
| 50 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.33E-02 |
| 51 | GO:0005198: structural molecule activity | 1.37E-02 |
| 52 | GO:0004674: protein serine/threonine kinase activity | 1.54E-02 |
| 53 | GO:0003777: microtubule motor activity | 1.67E-02 |
| 54 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 1.87E-02 |
| 55 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 1.87E-02 |
| 56 | GO:0016787: hydrolase activity | 1.87E-02 |
| 57 | GO:0016874: ligase activity | 1.91E-02 |
| 58 | GO:0022857: transmembrane transporter activity | 1.91E-02 |
| 59 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 2.05E-02 |
| 60 | GO:0019825: oxygen binding | 2.45E-02 |
| 61 | GO:0008270: zinc ion binding | 2.65E-02 |
| 62 | GO:0015144: carbohydrate transmembrane transporter activity | 2.66E-02 |
| 63 | GO:0005351: sugar:proton symporter activity | 2.89E-02 |
| 64 | GO:0003677: DNA binding | 2.90E-02 |
| 65 | GO:0008017: microtubule binding | 3.04E-02 |
| 66 | GO:0008194: UDP-glycosyltransferase activity | 3.19E-02 |
| 67 | GO:0016301: kinase activity | 3.44E-02 |
| 68 | GO:0050660: flavin adenine dinucleotide binding | 4.45E-02 |
| 69 | GO:0046983: protein dimerization activity | 4.63E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009783: photosystem II antenna complex | 0.00E+00 |
| 2 | GO:0009522: photosystem I | 1.10E-18 |
| 3 | GO:0009579: thylakoid | 6.77E-16 |
| 4 | GO:0009534: chloroplast thylakoid | 7.22E-16 |
| 5 | GO:0030076: light-harvesting complex | 8.66E-16 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 5.67E-15 |
| 7 | GO:0010287: plastoglobule | 3.66E-14 |
| 8 | GO:0009941: chloroplast envelope | 4.11E-09 |
| 9 | GO:0042651: thylakoid membrane | 2.61E-08 |
| 10 | GO:0009523: photosystem II | 1.49E-07 |
| 11 | GO:0009517: PSII associated light-harvesting complex II | 3.22E-06 |
| 12 | GO:0009507: chloroplast | 4.45E-05 |
| 13 | GO:0016020: membrane | 1.33E-04 |
| 14 | GO:0016021: integral component of membrane | 3.44E-04 |
| 15 | GO:0009533: chloroplast stromal thylakoid | 9.62E-04 |
| 16 | GO:0009538: photosystem I reaction center | 1.11E-03 |
| 17 | GO:0031966: mitochondrial membrane | 1.32E-03 |
| 18 | GO:0030095: chloroplast photosystem II | 2.49E-03 |
| 19 | GO:0009654: photosystem II oxygen evolving complex | 3.32E-03 |
| 20 | GO:0005871: kinesin complex | 4.47E-03 |
| 21 | GO:0019898: extrinsic component of membrane | 5.48E-03 |
| 22 | GO:0009707: chloroplast outer membrane | 8.91E-03 |
| 23 | GO:0031977: thylakoid lumen | 1.19E-02 |
| 24 | GO:0005887: integral component of plasma membrane | 1.31E-02 |
| 25 | GO:0016607: nuclear speck | 1.79E-02 |
| 26 | GO:0009706: chloroplast inner membrane | 1.99E-02 |
| 27 | GO:0005654: nucleoplasm | 2.29E-02 |
| 28 | GO:0009543: chloroplast thylakoid lumen | 2.34E-02 |
| 29 | GO:0005623: cell | 2.38E-02 |
| 30 | GO:0005874: microtubule | 4.56E-02 |