gene detail

Gene description

TAIR ID: AT3G50820

Short description: photosystem II subunit O-2

Pathogen responsiveness: -0.37

General responsiveness: 2.92

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G175562 GRMZM2G113349

Wheat:

TA.841.1.S1_A_AT

GO biological process

photosystem II assembly, photosynthesis, light reaction, photoinhibition, regulation of protein dephosphorylation, photosystem II stabilization

GO cellular component

plastoglobule, chloroplast thylakoid lumen, thylakoid, chloroplast stroma, chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast, chloroplast thylakoid, photosystem II oxygen evolving complex, extrinsic component of membrane, thylakoid lumen, integral component of membrane

GO molecular function

oxygen evolving activity, protein binding, calcium ion binding

Protein domain

Pfam	PF01716, Manganese-stabilising protein / photosystem II polypeptide

Metabolic pathway

PHOTOALL-PWY: oxygenic photosynthesis
PWY-101: photosynthesis light reactions

KEGG pathway

PATH:ath00195: Photosynthesis

Transcriptional regulation

Regulator:
AT1G51600, AT2G36270, AT5G11260, AT1G32640, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

12 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 2 h	-1.53	5.38E-03
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.81	2.72E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.42	1.12E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.64	2.54E-06
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.33	2.12E-08
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.63	2.62E-06
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.96	2.17E-07
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.64	3.30E-05
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-3.17	1.09E-07
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.07	5.63E-04
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-2.03	7.96E-07
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	-1.70	1.69E-02