gene detail

Gene description

TAIR ID: AT3G45780

Short description: phototropin 1

Pathogen responsiveness: 0.58

General responsiveness: 1.94

Orthologous

Rice: No orthologous gene

Maize:

Wheat: No orthologous gene

GO biological process

protein-chromophore linkage, response to blue light, circadian rhythm, blue light signaling pathway, chloroplast avoidance movement, protein autophosphorylation, negative regulation of anion channel activity by blue light, phototropism, phosphorelay signal transduction system, regulation of stomatal movement, regulation of proton transport, intracellular signal transduction, chloroplast accumulation movement

GO cellular component

plasma membrane, cytoplasm, cytoplasmic side of plasma membrane, vacuole, cell surface, nucleus

GO molecular function

kinase activity, protein kinase activity, protein serine/threonine kinase activity, protein binding, identical protein binding, blue light photoreceptor activity, FMN binding

Protein domain

Pfam	PF00069, Protein kinase domain
Pfam	PF13426, PAS domain
SMART	SM00091, PAS
SMART	SM00220, S_TKc
SMART	SM00086, PAC

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G51600, AT3G24050, AT4G36920, AT1G24260, AT5G61850, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 17 (Top10%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

24 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 2 h	-2.26	2.90E-03
GSE17464	Laer, control	Laer, Flg22 2 h	-2.30	8.96E-04
GSE17464	Penta, control	Penta, Flg22 2 h	-2.69	1.26E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-3.18	2.96E-09
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-2.16	1.67E-06
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.95	1.66E-02
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.24	3.70E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-3.93	7.08E-16
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-3.06	2.07E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-3.13	1.09E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.20	1.60E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-4.26	2.30E-16
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.48	8.06E-14
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.78	1.27E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.78	1.01E-05
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.16	3.41E-14
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.60	5.03E-09
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.62	3.55E-09
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-3.25	9.15E-04
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.72	6.14E-05
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h	-1.57	4.14E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	-2.54	4.53E-04
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	-2.36	8.79E-04
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 90-105 min	-1.78	1.14E-03