gene detail

Gene description

TAIR ID: AT3G28860

Short description: ATP binding cassette subfamily B19

Pathogen responsiveness: 0.07

General responsiveness: -0.71

Orthologous

Rice:

OS04G0459000 OS03G0280000 OS02G0190300

Maize:

GRMZM2G125424

Wheat: No orthologous gene

GO biological process

transmembrane transport, photomorphogenesis, lateral root development, auxin polar transport, response to far red light, stamen development, positive gravitropism, auxin-activated signaling pathway, acropetal auxin transport, root development, response to auxin, anthocyanin accumulation in tissues in response to UV light, response to blue light, basipetal auxin transport, regulation of cell size, formation of animal organ boundary, auxin transport, response to red or far red light

GO cellular component

integral component of membrane, plasma membrane

GO molecular function

ATP binding, auxin efflux transmembrane transporter activity, ATPase activity, coupled to transmembrane movement of substances, protein binding

Protein domain

Pfam	PF00664, ABC transporter transmembrane region
Pfam	PF00005, ABC transporter
SMART	SM00382, AAA

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath02010: ABC transporters

Transcriptional regulation

Regulator:
AT5G13790, AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 5

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

19 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.68	1.20E-04
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.72	5.81E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.72	8.62E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.58	5.42E-11
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.42	1.48E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.62	5.53E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.54	8.51E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-3.07	2.01E-12
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-2.34	1.31E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-3.25	1.01E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.09	6.57E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-3.66	1.53E-13
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.68	2.80E-07
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.95	1.64E-05
GSE5520	Col, WT, control 10 h	Col, WT, Cor- hrpS- 10 h	-1.74	2.64E-02
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	-1.50	2.67E-02
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.72	2.40E-06
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.35	3.15E-03
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-1.89	1.56E-02