GO Enrichment Analysis of Co-expressed Genes with
AT3G28860
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1900000: regulation of anthocyanin catabolic process | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 4 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 5 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 6 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 7 | GO:0042493: response to drug | 0.00E+00 |
| 8 | GO:0032544: plastid translation | 3.33E-06 |
| 9 | GO:0015979: photosynthesis | 3.79E-06 |
| 10 | GO:0010206: photosystem II repair | 4.68E-06 |
| 11 | GO:0015995: chlorophyll biosynthetic process | 1.96E-05 |
| 12 | GO:0009735: response to cytokinin | 3.85E-05 |
| 13 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 6.66E-05 |
| 14 | GO:0009664: plant-type cell wall organization | 9.64E-05 |
| 15 | GO:0009772: photosynthetic electron transport in photosystem II | 1.11E-04 |
| 16 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 1.82E-04 |
| 17 | GO:0043489: RNA stabilization | 1.82E-04 |
| 18 | GO:0042759: long-chain fatty acid biosynthetic process | 1.82E-04 |
| 19 | GO:0042371: vitamin K biosynthetic process | 1.82E-04 |
| 20 | GO:0009828: plant-type cell wall loosening | 1.93E-04 |
| 21 | GO:0009773: photosynthetic electron transport in photosystem I | 3.54E-04 |
| 22 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.06E-04 |
| 23 | GO:0043255: regulation of carbohydrate biosynthetic process | 4.10E-04 |
| 24 | GO:0001736: establishment of planar polarity | 4.10E-04 |
| 25 | GO:0045490: pectin catabolic process | 4.90E-04 |
| 26 | GO:0010207: photosystem II assembly | 5.21E-04 |
| 27 | GO:0009825: multidimensional cell growth | 5.83E-04 |
| 28 | GO:0006833: water transport | 6.48E-04 |
| 29 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 6.69E-04 |
| 30 | GO:0015840: urea transport | 6.69E-04 |
| 31 | GO:0090391: granum assembly | 6.69E-04 |
| 32 | GO:0006518: peptide metabolic process | 6.69E-04 |
| 33 | GO:0080055: low-affinity nitrate transport | 6.69E-04 |
| 34 | GO:0045493: xylan catabolic process | 6.69E-04 |
| 35 | GO:0051017: actin filament bundle assembly | 7.17E-04 |
| 36 | GO:0051513: regulation of monopolar cell growth | 9.55E-04 |
| 37 | GO:0071484: cellular response to light intensity | 9.55E-04 |
| 38 | GO:0009102: biotin biosynthetic process | 9.55E-04 |
| 39 | GO:0051639: actin filament network formation | 9.55E-04 |
| 40 | GO:0080170: hydrogen peroxide transmembrane transport | 9.55E-04 |
| 41 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 9.55E-04 |
| 42 | GO:0009650: UV protection | 9.55E-04 |
| 43 | GO:0010306: rhamnogalacturonan II biosynthetic process | 9.55E-04 |
| 44 | GO:1901332: negative regulation of lateral root development | 9.55E-04 |
| 45 | GO:0051764: actin crosslink formation | 1.27E-03 |
| 46 | GO:0030104: water homeostasis | 1.27E-03 |
| 47 | GO:0042631: cellular response to water deprivation | 1.29E-03 |
| 48 | GO:0042335: cuticle development | 1.29E-03 |
| 49 | GO:0034220: ion transmembrane transport | 1.29E-03 |
| 50 | GO:0010236: plastoquinone biosynthetic process | 1.61E-03 |
| 51 | GO:0006751: glutathione catabolic process | 1.98E-03 |
| 52 | GO:0007035: vacuolar acidification | 1.98E-03 |
| 53 | GO:0009913: epidermal cell differentiation | 1.98E-03 |
| 54 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.98E-03 |
| 55 | GO:0010337: regulation of salicylic acid metabolic process | 1.98E-03 |
| 56 | GO:0042372: phylloquinone biosynthetic process | 2.38E-03 |
| 57 | GO:0010027: thylakoid membrane organization | 2.46E-03 |
| 58 | GO:0009627: systemic acquired resistance | 2.74E-03 |
| 59 | GO:0010196: nonphotochemical quenching | 2.80E-03 |
| 60 | GO:1900057: positive regulation of leaf senescence | 2.80E-03 |
| 61 | GO:0009690: cytokinin metabolic process | 3.24E-03 |
| 62 | GO:0010311: lateral root formation | 3.36E-03 |
| 63 | GO:0009245: lipid A biosynthetic process | 4.20E-03 |
| 64 | GO:0048589: developmental growth | 4.20E-03 |
| 65 | GO:0006412: translation | 4.31E-03 |
| 66 | GO:0071555: cell wall organization | 4.59E-03 |
| 67 | GO:0030001: metal ion transport | 4.61E-03 |
| 68 | GO:0009826: unidimensional cell growth | 4.91E-03 |
| 69 | GO:0009658: chloroplast organization | 5.15E-03 |
| 70 | GO:0006949: syncytium formation | 5.24E-03 |
| 71 | GO:0010215: cellulose microfibril organization | 5.24E-03 |
| 72 | GO:0006535: cysteine biosynthetic process from serine | 5.24E-03 |
| 73 | GO:0006032: chitin catabolic process | 5.24E-03 |
| 74 | GO:0048829: root cap development | 5.24E-03 |
| 75 | GO:0042254: ribosome biogenesis | 5.28E-03 |
| 76 | GO:0010015: root morphogenesis | 5.79E-03 |
| 77 | GO:1903507: negative regulation of nucleic acid-templated transcription | 5.79E-03 |
| 78 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.79E-03 |
| 79 | GO:0048765: root hair cell differentiation | 5.79E-03 |
| 80 | GO:0010152: pollen maturation | 6.35E-03 |
| 81 | GO:0009718: anthocyanin-containing compound biosynthetic process | 6.94E-03 |
| 82 | GO:0006006: glucose metabolic process | 6.94E-03 |
| 83 | GO:0010143: cutin biosynthetic process | 7.55E-03 |
| 84 | GO:0019253: reductive pentose-phosphate cycle | 7.55E-03 |
| 85 | GO:0009409: response to cold | 7.79E-03 |
| 86 | GO:0010053: root epidermal cell differentiation | 8.18E-03 |
| 87 | GO:0010167: response to nitrate | 8.18E-03 |
| 88 | GO:0010030: positive regulation of seed germination | 8.18E-03 |
| 89 | GO:0010025: wax biosynthetic process | 8.82E-03 |
| 90 | GO:0019344: cysteine biosynthetic process | 9.48E-03 |
| 91 | GO:0000027: ribosomal large subunit assembly | 9.48E-03 |
| 92 | GO:0009624: response to nematode | 1.00E-02 |
| 93 | GO:0016042: lipid catabolic process | 1.07E-02 |
| 94 | GO:0048511: rhythmic process | 1.09E-02 |
| 95 | GO:0003333: amino acid transmembrane transport | 1.09E-02 |
| 96 | GO:0016998: cell wall macromolecule catabolic process | 1.09E-02 |
| 97 | GO:0015992: proton transport | 1.09E-02 |
| 98 | GO:0030245: cellulose catabolic process | 1.16E-02 |
| 99 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.16E-02 |
| 100 | GO:0009411: response to UV | 1.23E-02 |
| 101 | GO:0071369: cellular response to ethylene stimulus | 1.23E-02 |
| 102 | GO:0048443: stamen development | 1.31E-02 |
| 103 | GO:0006284: base-excision repair | 1.31E-02 |
| 104 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.38E-02 |
| 105 | GO:0080022: primary root development | 1.46E-02 |
| 106 | GO:0009790: embryo development | 1.47E-02 |
| 107 | GO:0009958: positive gravitropism | 1.54E-02 |
| 108 | GO:0048868: pollen tube development | 1.54E-02 |
| 109 | GO:0042752: regulation of circadian rhythm | 1.62E-02 |
| 110 | GO:0015986: ATP synthesis coupled proton transport | 1.62E-02 |
| 111 | GO:0048825: cotyledon development | 1.70E-02 |
| 112 | GO:0009734: auxin-activated signaling pathway | 1.72E-02 |
| 113 | GO:0000302: response to reactive oxygen species | 1.79E-02 |
| 114 | GO:0009733: response to auxin | 1.95E-02 |
| 115 | GO:0030163: protein catabolic process | 1.96E-02 |
| 116 | GO:0009567: double fertilization forming a zygote and endosperm | 2.05E-02 |
| 117 | GO:0009416: response to light stimulus | 2.30E-02 |
| 118 | GO:0010411: xyloglucan metabolic process | 2.61E-02 |
| 119 | GO:0009817: defense response to fungus, incompatible interaction | 2.81E-02 |
| 120 | GO:0030244: cellulose biosynthetic process | 2.81E-02 |
| 121 | GO:0009860: pollen tube growth | 2.89E-02 |
| 122 | GO:0007568: aging | 3.11E-02 |
| 123 | GO:0009631: cold acclimation | 3.11E-02 |
| 124 | GO:0006865: amino acid transport | 3.22E-02 |
| 125 | GO:0045087: innate immune response | 3.32E-02 |
| 126 | GO:0016051: carbohydrate biosynthetic process | 3.32E-02 |
| 127 | GO:0080167: response to karrikin | 3.33E-02 |
| 128 | GO:0034599: cellular response to oxidative stress | 3.43E-02 |
| 129 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.44E-02 |
| 130 | GO:0010114: response to red light | 3.98E-02 |
| 131 | GO:0009926: auxin polar transport | 3.98E-02 |
| 132 | GO:0006855: drug transmembrane transport | 4.44E-02 |
| 133 | GO:0031347: regulation of defense response | 4.56E-02 |
| 134 | GO:0032259: methylation | 4.69E-02 |
| 135 | GO:0006281: DNA repair | 4.89E-02 |
| 136 | GO:0009809: lignin biosynthetic process | 4.92E-02 |
| 137 | GO:0006364: rRNA processing | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 2 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 3 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 4 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 5 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
| 6 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
| 7 | GO:0019843: rRNA binding | 1.79E-06 |
| 8 | GO:0016851: magnesium chelatase activity | 1.35E-05 |
| 9 | GO:0010011: auxin binding | 2.51E-05 |
| 10 | GO:0005528: FK506 binding | 3.69E-05 |
| 11 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 6.00E-05 |
| 12 | GO:0030570: pectate lyase activity | 6.66E-05 |
| 13 | GO:0047807: cytokinin 7-beta-glucosyltransferase activity | 1.82E-04 |
| 14 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 1.82E-04 |
| 15 | GO:0080062: cytokinin 9-beta-glucosyltransferase activity | 1.82E-04 |
| 16 | GO:0015200: methylammonium transmembrane transporter activity | 1.82E-04 |
| 17 | GO:0015250: water channel activity | 2.47E-04 |
| 18 | GO:0016829: lyase activity | 3.34E-04 |
| 19 | GO:0003839: gamma-glutamylcyclotransferase activity | 4.10E-04 |
| 20 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 4.10E-04 |
| 21 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 6.69E-04 |
| 22 | GO:0080054: low-affinity nitrate transmembrane transporter activity | 6.69E-04 |
| 23 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.01E-04 |
| 24 | GO:0043023: ribosomal large subunit binding | 9.55E-04 |
| 25 | GO:0010328: auxin influx transmembrane transporter activity | 1.27E-03 |
| 26 | GO:0052793: pectin acetylesterase activity | 1.27E-03 |
| 27 | GO:0009044: xylan 1,4-beta-xylosidase activity | 1.27E-03 |
| 28 | GO:0046556: alpha-L-arabinofuranosidase activity | 1.27E-03 |
| 29 | GO:0015204: urea transmembrane transporter activity | 1.27E-03 |
| 30 | GO:0004659: prenyltransferase activity | 1.27E-03 |
| 31 | GO:0003735: structural constituent of ribosome | 1.46E-03 |
| 32 | GO:0052689: carboxylic ester hydrolase activity | 1.52E-03 |
| 33 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.61E-03 |
| 34 | GO:0051015: actin filament binding | 1.94E-03 |
| 35 | GO:0004130: cytochrome-c peroxidase activity | 1.98E-03 |
| 36 | GO:0031177: phosphopantetheine binding | 1.98E-03 |
| 37 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.98E-03 |
| 38 | GO:0008519: ammonium transmembrane transporter activity | 1.98E-03 |
| 39 | GO:0004252: serine-type endopeptidase activity | 2.25E-03 |
| 40 | GO:0004124: cysteine synthase activity | 2.38E-03 |
| 41 | GO:0000035: acyl binding | 2.38E-03 |
| 42 | GO:0008236: serine-type peptidase activity | 3.04E-03 |
| 43 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 3.24E-03 |
| 44 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 3.24E-03 |
| 45 | GO:0004568: chitinase activity | 5.24E-03 |
| 46 | GO:0015020: glucuronosyltransferase activity | 5.24E-03 |
| 47 | GO:0016788: hydrolase activity, acting on ester bonds | 5.28E-03 |
| 48 | GO:0046961: proton-transporting ATPase activity, rotational mechanism | 5.79E-03 |
| 49 | GO:0031072: heat shock protein binding | 6.94E-03 |
| 50 | GO:0008266: poly(U) RNA binding | 7.55E-03 |
| 51 | GO:0004650: polygalacturonase activity | 9.13E-03 |
| 52 | GO:0003714: transcription corepressor activity | 9.48E-03 |
| 53 | GO:0004707: MAP kinase activity | 1.09E-02 |
| 54 | GO:0008810: cellulase activity | 1.23E-02 |
| 55 | GO:0003756: protein disulfide isomerase activity | 1.31E-02 |
| 56 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.54E-02 |
| 57 | GO:0016791: phosphatase activity | 2.05E-02 |
| 58 | GO:0016168: chlorophyll binding | 2.42E-02 |
| 59 | GO:0008375: acetylglucosaminyltransferase activity | 2.51E-02 |
| 60 | GO:0030247: polysaccharide binding | 2.61E-02 |
| 61 | GO:0005096: GTPase activator activity | 2.91E-02 |
| 62 | GO:0004222: metalloendopeptidase activity | 3.01E-02 |
| 63 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.25E-02 |
| 64 | GO:0003746: translation elongation factor activity | 3.32E-02 |
| 65 | GO:0003993: acid phosphatase activity | 3.43E-02 |
| 66 | GO:0050661: NADP binding | 3.65E-02 |
| 67 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.65E-02 |
| 68 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.21E-02 |
| 69 | GO:0015293: symporter activity | 4.32E-02 |
| 70 | GO:0051287: NAD binding | 4.56E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 2 | GO:0009930: longitudinal side of cell surface | 0.00E+00 |
| 3 | GO:0043224: nuclear SCF ubiquitin ligase complex | 0.00E+00 |
| 4 | GO:0009534: chloroplast thylakoid | 9.49E-18 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.63E-17 |
| 6 | GO:0009941: chloroplast envelope | 1.89E-16 |
| 7 | GO:0009570: chloroplast stroma | 6.53E-15 |
| 8 | GO:0009507: chloroplast | 1.26E-13 |
| 9 | GO:0009579: thylakoid | 1.80E-12 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 9.78E-11 |
| 11 | GO:0010007: magnesium chelatase complex | 5.87E-06 |
| 12 | GO:0016020: membrane | 1.13E-05 |
| 13 | GO:0030095: chloroplast photosystem II | 2.15E-05 |
| 14 | GO:0009505: plant-type cell wall | 2.20E-05 |
| 15 | GO:0031977: thylakoid lumen | 5.42E-05 |
| 16 | GO:0005618: cell wall | 6.01E-05 |
| 17 | GO:0042807: central vacuole | 1.11E-04 |
| 18 | GO:0043674: columella | 1.82E-04 |
| 19 | GO:0009515: granal stacked thylakoid | 1.82E-04 |
| 20 | GO:0005576: extracellular region | 2.35E-04 |
| 21 | GO:0005840: ribosome | 3.52E-04 |
| 22 | GO:0030093: chloroplast photosystem I | 4.10E-04 |
| 23 | GO:0009508: plastid chromosome | 4.63E-04 |
| 24 | GO:0016328: lateral plasma membrane | 6.69E-04 |
| 25 | GO:0009509: chromoplast | 6.69E-04 |
| 26 | GO:0009897: external side of plasma membrane | 6.69E-04 |
| 27 | GO:0009531: secondary cell wall | 9.55E-04 |
| 28 | GO:0032432: actin filament bundle | 9.55E-04 |
| 29 | GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain | 1.61E-03 |
| 30 | GO:0048046: apoplast | 1.83E-03 |
| 31 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.98E-03 |
| 32 | GO:0009295: nucleoid | 2.19E-03 |
| 33 | GO:0009533: chloroplast stromal thylakoid | 2.80E-03 |
| 34 | GO:0009986: cell surface | 2.80E-03 |
| 35 | GO:0009538: photosystem I reaction center | 3.24E-03 |
| 36 | GO:0000326: protein storage vacuole | 3.71E-03 |
| 37 | GO:0005768: endosome | 3.82E-03 |
| 38 | GO:0042644: chloroplast nucleoid | 4.20E-03 |
| 39 | GO:0008180: COP9 signalosome | 4.20E-03 |
| 40 | GO:0055028: cortical microtubule | 5.24E-03 |
| 41 | GO:0005884: actin filament | 5.79E-03 |
| 42 | GO:0009536: plastid | 6.56E-03 |
| 43 | GO:0009654: photosystem II oxygen evolving complex | 1.02E-02 |
| 44 | GO:0015629: actin cytoskeleton | 1.23E-02 |
| 45 | GO:0009522: photosystem I | 1.62E-02 |
| 46 | GO:0005887: integral component of plasma membrane | 1.64E-02 |
| 47 | GO:0019898: extrinsic component of membrane | 1.70E-02 |
| 48 | GO:0009523: photosystem II | 1.70E-02 |
| 49 | GO:0009705: plant-type vacuole membrane | 1.74E-02 |
| 50 | GO:0010319: stromule | 2.14E-02 |
| 51 | GO:0030529: intracellular ribonucleoprotein complex | 2.32E-02 |
| 52 | GO:0019005: SCF ubiquitin ligase complex | 2.81E-02 |
| 53 | GO:0005794: Golgi apparatus | 3.30E-02 |
| 54 | GO:0031969: chloroplast membrane | 3.33E-02 |
| 55 | GO:0031225: anchored component of membrane | 3.99E-02 |
| 56 | GO:0005802: trans-Golgi network | 4.12E-02 |
| 57 | GO:0005856: cytoskeleton | 4.32E-02 |
| 58 | GO:0000502: proteasome complex | 4.92E-02 |