GO Enrichment Analysis of Co-expressed Genes with
AT3G28860
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 2 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 3 | GO:0006573: valine metabolic process | 0.00E+00 |
| 4 | GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process | 0.00E+00 |
| 5 | GO:1905157: positive regulation of photosynthesis | 0.00E+00 |
| 6 | GO:0006982: response to lipid hydroperoxide | 0.00E+00 |
| 7 | GO:0010335: response to non-ionic osmotic stress | 0.00E+00 |
| 8 | GO:1902171: regulation of tocopherol cyclase activity | 0.00E+00 |
| 9 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 10 | GO:0010143: cutin biosynthetic process | 3.55E-05 |
| 11 | GO:0016559: peroxisome fission | 2.00E-04 |
| 12 | GO:0010362: negative regulation of anion channel activity by blue light | 2.27E-04 |
| 13 | GO:0015969: guanosine tetraphosphate metabolic process | 2.27E-04 |
| 14 | GO:0010426: DNA methylation on cytosine within a CHH sequence | 2.27E-04 |
| 15 | GO:0046467: membrane lipid biosynthetic process | 2.27E-04 |
| 16 | GO:0031426: polycistronic mRNA processing | 2.27E-04 |
| 17 | GO:0000481: maturation of 5S rRNA | 2.27E-04 |
| 18 | GO:0006551: leucine metabolic process | 2.27E-04 |
| 19 | GO:0043686: co-translational protein modification | 2.27E-04 |
| 20 | GO:0043087: regulation of GTPase activity | 2.27E-04 |
| 21 | GO:0071461: cellular response to redox state | 2.27E-04 |
| 22 | GO:0046167: glycerol-3-phosphate biosynthetic process | 2.27E-04 |
| 23 | GO:0043007: maintenance of rDNA | 2.27E-04 |
| 24 | GO:1902458: positive regulation of stomatal opening | 2.27E-04 |
| 25 | GO:0034337: RNA folding | 2.27E-04 |
| 26 | GO:0015995: chlorophyll biosynthetic process | 4.63E-04 |
| 27 | GO:0044550: secondary metabolite biosynthetic process | 4.98E-04 |
| 28 | GO:0042819: vitamin B6 biosynthetic process | 5.05E-04 |
| 29 | GO:0080005: photosystem stoichiometry adjustment | 5.05E-04 |
| 30 | GO:0006650: glycerophospholipid metabolic process | 5.05E-04 |
| 31 | GO:0010155: regulation of proton transport | 5.05E-04 |
| 32 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 5.05E-04 |
| 33 | GO:0015790: UDP-xylose transport | 5.05E-04 |
| 34 | GO:0010207: photosystem II assembly | 7.06E-04 |
| 35 | GO:0046168: glycerol-3-phosphate catabolic process | 8.21E-04 |
| 36 | GO:0044375: regulation of peroxisome size | 8.21E-04 |
| 37 | GO:0046621: negative regulation of organ growth | 8.21E-04 |
| 38 | GO:0055114: oxidation-reduction process | 1.05E-03 |
| 39 | GO:0006072: glycerol-3-phosphate metabolic process | 1.17E-03 |
| 40 | GO:0008615: pyridoxine biosynthetic process | 1.17E-03 |
| 41 | GO:0042823: pyridoxal phosphate biosynthetic process | 1.17E-03 |
| 42 | GO:2001141: regulation of RNA biosynthetic process | 1.17E-03 |
| 43 | GO:0010239: chloroplast mRNA processing | 1.17E-03 |
| 44 | GO:0019722: calcium-mediated signaling | 1.50E-03 |
| 45 | GO:0009658: chloroplast organization | 1.53E-03 |
| 46 | GO:0015994: chlorophyll metabolic process | 1.56E-03 |
| 47 | GO:0006546: glycine catabolic process | 1.56E-03 |
| 48 | GO:0008295: spermidine biosynthetic process | 1.56E-03 |
| 49 | GO:0006021: inositol biosynthetic process | 1.56E-03 |
| 50 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.56E-03 |
| 51 | GO:0006520: cellular amino acid metabolic process | 1.89E-03 |
| 52 | GO:0006564: L-serine biosynthetic process | 1.99E-03 |
| 53 | GO:0009904: chloroplast accumulation movement | 1.99E-03 |
| 54 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.99E-03 |
| 55 | GO:0031365: N-terminal protein amino acid modification | 1.99E-03 |
| 56 | GO:0006465: signal peptide processing | 1.99E-03 |
| 57 | GO:0007018: microtubule-based movement | 2.03E-03 |
| 58 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 2.45E-03 |
| 59 | GO:0009228: thiamine biosynthetic process | 2.45E-03 |
| 60 | GO:0046855: inositol phosphate dephosphorylation | 2.45E-03 |
| 61 | GO:0009643: photosynthetic acclimation | 2.45E-03 |
| 62 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.45E-03 |
| 63 | GO:0009082: branched-chain amino acid biosynthetic process | 2.94E-03 |
| 64 | GO:0048280: vesicle fusion with Golgi apparatus | 2.94E-03 |
| 65 | GO:0009099: valine biosynthetic process | 2.94E-03 |
| 66 | GO:0009903: chloroplast avoidance movement | 2.94E-03 |
| 67 | GO:0010019: chloroplast-nucleus signaling pathway | 2.94E-03 |
| 68 | GO:0007267: cell-cell signaling | 2.99E-03 |
| 69 | GO:0048437: floral organ development | 3.47E-03 |
| 70 | GO:0006400: tRNA modification | 3.47E-03 |
| 71 | GO:1900056: negative regulation of leaf senescence | 3.47E-03 |
| 72 | GO:0042255: ribosome assembly | 4.02E-03 |
| 73 | GO:0006353: DNA-templated transcription, termination | 4.02E-03 |
| 74 | GO:0032508: DNA duplex unwinding | 4.02E-03 |
| 75 | GO:2000070: regulation of response to water deprivation | 4.02E-03 |
| 76 | GO:0050821: protein stabilization | 4.02E-03 |
| 77 | GO:0000105: histidine biosynthetic process | 4.02E-03 |
| 78 | GO:0007155: cell adhesion | 4.02E-03 |
| 79 | GO:0030244: cellulose biosynthetic process | 4.38E-03 |
| 80 | GO:0007186: G-protein coupled receptor signaling pathway | 4.60E-03 |
| 81 | GO:0009657: plastid organization | 4.60E-03 |
| 82 | GO:0009097: isoleucine biosynthetic process | 4.60E-03 |
| 83 | GO:0009932: cell tip growth | 4.60E-03 |
| 84 | GO:0071482: cellular response to light stimulus | 4.60E-03 |
| 85 | GO:0015996: chlorophyll catabolic process | 4.60E-03 |
| 86 | GO:0006811: ion transport | 4.82E-03 |
| 87 | GO:0009821: alkaloid biosynthetic process | 5.22E-03 |
| 88 | GO:0051865: protein autoubiquitination | 5.22E-03 |
| 89 | GO:0048507: meristem development | 5.22E-03 |
| 90 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 5.85E-03 |
| 91 | GO:0010380: regulation of chlorophyll biosynthetic process | 5.85E-03 |
| 92 | GO:0009638: phototropism | 5.85E-03 |
| 93 | GO:0006896: Golgi to vacuole transport | 6.51E-03 |
| 94 | GO:0009641: shade avoidance | 6.51E-03 |
| 95 | GO:0010215: cellulose microfibril organization | 6.51E-03 |
| 96 | GO:0010192: mucilage biosynthetic process | 6.51E-03 |
| 97 | GO:0006631: fatty acid metabolic process | 6.58E-03 |
| 98 | GO:0009744: response to sucrose | 7.14E-03 |
| 99 | GO:0043085: positive regulation of catalytic activity | 7.20E-03 |
| 100 | GO:0006352: DNA-templated transcription, initiation | 7.20E-03 |
| 101 | GO:0018119: peptidyl-cysteine S-nitrosylation | 7.20E-03 |
| 102 | GO:0016485: protein processing | 7.20E-03 |
| 103 | GO:0016024: CDP-diacylglycerol biosynthetic process | 7.92E-03 |
| 104 | GO:0045037: protein import into chloroplast stroma | 7.92E-03 |
| 105 | GO:0006790: sulfur compound metabolic process | 7.92E-03 |
| 106 | GO:0030048: actin filament-based movement | 8.66E-03 |
| 107 | GO:0009785: blue light signaling pathway | 8.66E-03 |
| 108 | GO:0006006: glucose metabolic process | 8.66E-03 |
| 109 | GO:0009718: anthocyanin-containing compound biosynthetic process | 8.66E-03 |
| 110 | GO:0009725: response to hormone | 8.66E-03 |
| 111 | GO:0009767: photosynthetic electron transport chain | 8.66E-03 |
| 112 | GO:0042538: hyperosmotic salinity response | 8.97E-03 |
| 113 | GO:0034605: cellular response to heat | 9.42E-03 |
| 114 | GO:0010020: chloroplast fission | 9.42E-03 |
| 115 | GO:0019253: reductive pentose-phosphate cycle | 9.42E-03 |
| 116 | GO:0010223: secondary shoot formation | 9.42E-03 |
| 117 | GO:0009887: animal organ morphogenesis | 9.42E-03 |
| 118 | GO:0007165: signal transduction | 9.78E-03 |
| 119 | GO:0042343: indole glucosinolate metabolic process | 1.02E-02 |
| 120 | GO:0009825: multidimensional cell growth | 1.02E-02 |
| 121 | GO:0019853: L-ascorbic acid biosynthetic process | 1.02E-02 |
| 122 | GO:0046854: phosphatidylinositol phosphorylation | 1.02E-02 |
| 123 | GO:0007031: peroxisome organization | 1.02E-02 |
| 124 | GO:0006857: oligopeptide transport | 1.03E-02 |
| 125 | GO:0010025: wax biosynthetic process | 1.10E-02 |
| 126 | GO:0009833: plant-type primary cell wall biogenesis | 1.10E-02 |
| 127 | GO:0006306: DNA methylation | 1.36E-02 |
| 128 | GO:0016114: terpenoid biosynthetic process | 1.36E-02 |
| 129 | GO:0098542: defense response to other organism | 1.36E-02 |
| 130 | GO:0019915: lipid storage | 1.36E-02 |
| 131 | GO:0019748: secondary metabolic process | 1.45E-02 |
| 132 | GO:0009294: DNA mediated transformation | 1.54E-02 |
| 133 | GO:0071369: cellular response to ethylene stimulus | 1.54E-02 |
| 134 | GO:0006817: phosphate ion transport | 1.64E-02 |
| 135 | GO:0009408: response to heat | 1.66E-02 |
| 136 | GO:0042147: retrograde transport, endosome to Golgi | 1.73E-02 |
| 137 | GO:0045489: pectin biosynthetic process | 1.93E-02 |
| 138 | GO:0010182: sugar mediated signaling pathway | 1.93E-02 |
| 139 | GO:0009646: response to absence of light | 2.03E-02 |
| 140 | GO:0006623: protein targeting to vacuole | 2.14E-02 |
| 141 | GO:0009791: post-embryonic development | 2.14E-02 |
| 142 | GO:0010183: pollen tube guidance | 2.14E-02 |
| 143 | GO:0008654: phospholipid biosynthetic process | 2.14E-02 |
| 144 | GO:0006891: intra-Golgi vesicle-mediated transport | 2.24E-02 |
| 145 | GO:0032502: developmental process | 2.35E-02 |
| 146 | GO:0007264: small GTPase mediated signal transduction | 2.35E-02 |
| 147 | GO:0007623: circadian rhythm | 2.38E-02 |
| 148 | GO:0071555: cell wall organization | 2.64E-02 |
| 149 | GO:0010027: thylakoid membrane organization | 2.91E-02 |
| 150 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 3.03E-02 |
| 151 | GO:0006888: ER to Golgi vesicle-mediated transport | 3.27E-02 |
| 152 | GO:0016311: dephosphorylation | 3.40E-02 |
| 153 | GO:0009416: response to light stimulus | 3.41E-02 |
| 154 | GO:0018298: protein-chromophore linkage | 3.52E-02 |
| 155 | GO:0010311: lateral root formation | 3.65E-02 |
| 156 | GO:0000160: phosphorelay signal transduction system | 3.65E-02 |
| 157 | GO:0009407: toxin catabolic process | 3.77E-02 |
| 158 | GO:0010119: regulation of stomatal movement | 3.90E-02 |
| 159 | GO:0007568: aging | 3.90E-02 |
| 160 | GO:0009910: negative regulation of flower development | 3.90E-02 |
| 161 | GO:0045893: positive regulation of transcription, DNA-templated | 4.05E-02 |
| 162 | GO:0009409: response to cold | 4.10E-02 |
| 163 | GO:0009637: response to blue light | 4.17E-02 |
| 164 | GO:0034599: cellular response to oxidative stress | 4.30E-02 |
| 165 | GO:0046777: protein autophosphorylation | 4.86E-02 |
| 166 | GO:0010114: response to red light | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009673: low-affinity phosphate transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 3 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 4 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 5 | GO:0036033: mediator complex binding | 0.00E+00 |
| 6 | GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity | 0.00E+00 |
| 7 | GO:0000293: ferric-chelate reductase activity | 8.60E-05 |
| 8 | GO:0042586: peptide deformylase activity | 2.27E-04 |
| 9 | GO:0003984: acetolactate synthase activity | 2.27E-04 |
| 10 | GO:0031957: very long-chain fatty acid-CoA ligase activity | 2.27E-04 |
| 11 | GO:0004328: formamidase activity | 2.27E-04 |
| 12 | GO:0003879: ATP phosphoribosyltransferase activity | 2.27E-04 |
| 13 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.27E-04 |
| 14 | GO:0035671: enone reductase activity | 2.27E-04 |
| 15 | GO:0046906: tetrapyrrole binding | 2.27E-04 |
| 16 | GO:0047259: glucomannan 4-beta-mannosyltransferase activity | 2.27E-04 |
| 17 | GO:0008934: inositol monophosphate 1-phosphatase activity | 5.05E-04 |
| 18 | GO:0052833: inositol monophosphate 4-phosphatase activity | 5.05E-04 |
| 19 | GO:0005464: UDP-xylose transmembrane transporter activity | 5.05E-04 |
| 20 | GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity | 5.05E-04 |
| 21 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 5.05E-04 |
| 22 | GO:0048531: beta-1,3-galactosyltransferase activity | 5.05E-04 |
| 23 | GO:0008728: GTP diphosphokinase activity | 5.05E-04 |
| 24 | GO:0080045: quercetin 3'-O-glucosyltransferase activity | 5.05E-04 |
| 25 | GO:0004617: phosphoglycerate dehydrogenase activity | 5.05E-04 |
| 26 | GO:0004766: spermidine synthase activity | 5.05E-04 |
| 27 | GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity | 5.05E-04 |
| 28 | GO:0052832: inositol monophosphate 3-phosphatase activity | 5.05E-04 |
| 29 | GO:0004565: beta-galactosidase activity | 6.27E-04 |
| 30 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 6.77E-04 |
| 31 | GO:0050734: hydroxycinnamoyltransferase activity | 8.21E-04 |
| 32 | GO:0003913: DNA photolyase activity | 8.21E-04 |
| 33 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 8.21E-04 |
| 34 | GO:0008017: microtubule binding | 8.50E-04 |
| 35 | GO:0035091: phosphatidylinositol binding | 1.08E-03 |
| 36 | GO:0048027: mRNA 5'-UTR binding | 1.17E-03 |
| 37 | GO:0022890: inorganic cation transmembrane transporter activity | 1.17E-03 |
| 38 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 1.17E-03 |
| 39 | GO:0009882: blue light photoreceptor activity | 1.17E-03 |
| 40 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.17E-03 |
| 41 | GO:0003727: single-stranded RNA binding | 1.50E-03 |
| 42 | GO:0016987: sigma factor activity | 1.56E-03 |
| 43 | GO:0001053: plastid sigma factor activity | 1.56E-03 |
| 44 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.82E-03 |
| 45 | GO:0035673: oligopeptide transmembrane transporter activity | 2.45E-03 |
| 46 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.45E-03 |
| 47 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.45E-03 |
| 48 | GO:0080046: quercetin 4'-O-glucosyltransferase activity | 2.45E-03 |
| 49 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.94E-03 |
| 50 | GO:0102391: decanoate--CoA ligase activity | 2.94E-03 |
| 51 | GO:0051753: mannan synthase activity | 2.94E-03 |
| 52 | GO:0003886: DNA (cytosine-5-)-methyltransferase activity | 2.94E-03 |
| 53 | GO:0009927: histidine phosphotransfer kinase activity | 2.94E-03 |
| 54 | GO:0016597: amino acid binding | 3.17E-03 |
| 55 | GO:0019899: enzyme binding | 3.47E-03 |
| 56 | GO:0004467: long-chain fatty acid-CoA ligase activity | 3.47E-03 |
| 57 | GO:0016491: oxidoreductase activity | 3.99E-03 |
| 58 | GO:0019825: oxygen binding | 4.33E-03 |
| 59 | GO:0020037: heme binding | 5.70E-03 |
| 60 | GO:0016844: strictosidine synthase activity | 5.85E-03 |
| 61 | GO:0042802: identical protein binding | 6.00E-03 |
| 62 | GO:0015386: potassium:proton antiporter activity | 7.20E-03 |
| 63 | GO:0005506: iron ion binding | 7.79E-03 |
| 64 | GO:0015198: oligopeptide transporter activity | 7.92E-03 |
| 65 | GO:0008081: phosphoric diester hydrolase activity | 8.66E-03 |
| 66 | GO:0005315: inorganic phosphate transmembrane transporter activity | 8.66E-03 |
| 67 | GO:0031072: heat shock protein binding | 8.66E-03 |
| 68 | GO:0000155: phosphorelay sensor kinase activity | 8.66E-03 |
| 69 | GO:0051287: NAD binding | 8.66E-03 |
| 70 | GO:0003774: motor activity | 9.42E-03 |
| 71 | GO:0031624: ubiquitin conjugating enzyme binding | 9.42E-03 |
| 72 | GO:0008146: sulfotransferase activity | 1.02E-02 |
| 73 | GO:0003777: microtubule motor activity | 1.07E-02 |
| 74 | GO:0015079: potassium ion transmembrane transporter activity | 1.27E-02 |
| 75 | GO:0042803: protein homodimerization activity | 1.35E-02 |
| 76 | GO:0030570: pectate lyase activity | 1.54E-02 |
| 77 | GO:0016760: cellulose synthase (UDP-forming) activity | 1.54E-02 |
| 78 | GO:0015299: solute:proton antiporter activity | 2.03E-02 |
| 79 | GO:0010181: FMN binding | 2.03E-02 |
| 80 | GO:0004872: receptor activity | 2.14E-02 |
| 81 | GO:0016757: transferase activity, transferring glycosyl groups | 2.49E-02 |
| 82 | GO:0016791: phosphatase activity | 2.57E-02 |
| 83 | GO:0016759: cellulose synthase activity | 2.57E-02 |
| 84 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.68E-02 |
| 85 | GO:0016887: ATPase activity | 2.88E-02 |
| 86 | GO:0005096: GTPase activator activity | 3.65E-02 |
| 87 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.90E-02 |
| 88 | GO:0003993: acid phosphatase activity | 4.30E-02 |
| 89 | GO:0016740: transferase activity | 4.36E-02 |
| 90 | GO:0000149: SNARE binding | 4.43E-02 |
| 91 | GO:0004672: protein kinase activity | 4.60E-02 |
| 92 | GO:0003729: mRNA binding | 4.69E-02 |
| 93 | GO:0004364: glutathione transferase activity | 4.85E-02 |
| 94 | GO:0005484: SNAP receptor activity | 4.98E-02 |
| 95 | GO:0004185: serine-type carboxypeptidase activity | 4.98E-02 |