co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0051513: regulation of monopolar cell growth	3.65E-06
5	GO:0010206: photosystem II repair	7.10E-05
6	GO:0015995: chlorophyll biosynthetic process	7.23E-05
7	GO:0043007: maintenance of rDNA	8.61E-05
8	GO:0009734: auxin-activated signaling pathway	1.29E-04
9	GO:0009926: auxin polar transport	1.72E-04
10	GO:0009733: response to auxin	1.83E-04
11	GO:0001736: establishment of planar polarity	2.04E-04
12	GO:0006898: receptor-mediated endocytosis	2.04E-04
13	GO:0009664: plant-type cell wall organization	2.36E-04
14	GO:0016045: detection of bacterium	3.42E-04
15	GO:0010359: regulation of anion channel activity	3.42E-04
16	GO:0080055: low-affinity nitrate transport	3.42E-04
17	GO:0045493: xylan catabolic process	3.42E-04
18	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.83E-04
19	GO:0034220: ion transmembrane transport	4.86E-04
20	GO:0042335: cuticle development	4.86E-04
21	GO:1901332: negative regulation of lateral root development	4.92E-04
22	GO:0080170: hydrogen peroxide transmembrane transport	4.92E-04
23	GO:0030104: water homeostasis	6.55E-04
24	GO:0009828: plant-type cell wall loosening	7.72E-04
25	GO:0010438: cellular response to sulfur starvation	8.29E-04
26	GO:0009739: response to gibberellin	9.41E-04
27	GO:0009913: epidermal cell differentiation	1.01E-03
28	GO:0009759: indole glucosinolate biosynthetic process	1.01E-03
29	GO:0009942: longitudinal axis specification	1.20E-03
30	GO:0010311: lateral root formation	1.23E-03
31	GO:1900056: negative regulation of leaf senescence	1.41E-03
32	GO:0046620: regulation of organ growth	1.63E-03
33	GO:0080167: response to karrikin	1.84E-03
34	GO:0007389: pattern specification process	1.86E-03
35	GO:0006783: heme biosynthetic process	2.10E-03
36	GO:0048589: developmental growth	2.10E-03
37	GO:0009245: lipid A biosynthetic process	2.10E-03
38	GO:0009638: phototropism	2.35E-03
39	GO:0048829: root cap development	2.61E-03
40	GO:0006949: syncytium formation	2.61E-03
41	GO:0006782: protoporphyrinogen IX biosynthetic process	2.61E-03
42	GO:1903507: negative regulation of nucleic acid-templated transcription	2.87E-03
43	GO:0009750: response to fructose	2.87E-03
44	GO:0048765: root hair cell differentiation	2.87E-03
45	GO:0010015: root morphogenesis	2.87E-03
46	GO:0052544: defense response by callose deposition in cell wall	2.87E-03
47	GO:0010152: pollen maturation	3.15E-03
48	GO:0002213: defense response to insect	3.15E-03
49	GO:0009740: gibberellic acid mediated signaling pathway	3.38E-03
50	GO:0030048: actin filament-based movement	3.43E-03
51	GO:0010102: lateral root morphogenesis	3.43E-03
52	GO:0009785: blue light signaling pathway	3.43E-03
53	GO:0009624: response to nematode	3.59E-03
54	GO:0010030: positive regulation of seed germination	4.03E-03
55	GO:0006833: water transport	4.34E-03
56	GO:0000162: tryptophan biosynthetic process	4.34E-03
57	GO:0051017: actin filament bundle assembly	4.65E-03
58	GO:2000377: regulation of reactive oxygen species metabolic process	4.65E-03
59	GO:0007017: microtubule-based process	4.98E-03
60	GO:0003333: amino acid transmembrane transport	5.32E-03
61	GO:2000022: regulation of jasmonic acid mediated signaling pathway	5.66E-03
62	GO:0045490: pectin catabolic process	6.18E-03
63	GO:0048443: stamen development	6.36E-03
64	GO:0006284: base-excision repair	6.36E-03
65	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.73E-03
66	GO:0042631: cellular response to water deprivation	7.10E-03
67	GO:0009958: positive gravitropism	7.48E-03
68	GO:0048825: cotyledon development	8.26E-03
69	GO:0009749: response to glucose	8.26E-03
70	GO:0010583: response to cyclopentenone	9.07E-03
71	GO:0016032: viral process	9.07E-03
72	GO:0009826: unidimensional cell growth	9.21E-03
73	GO:0030163: protein catabolic process	9.48E-03
74	GO:0010252: auxin homeostasis	9.91E-03
75	GO:0009627: systemic acquired resistance	1.21E-02
76	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.23E-02
77	GO:0010411: xyloglucan metabolic process	1.26E-02
78	GO:0015979: photosynthesis	1.36E-02
79	GO:0045892: negative regulation of transcription, DNA-templated	1.45E-02
80	GO:0071555: cell wall organization	1.52E-02
81	GO:0006865: amino acid transport	1.55E-02
82	GO:0016051: carbohydrate biosynthetic process	1.60E-02
83	GO:0006281: DNA repair	1.76E-02
84	GO:0010114: response to red light	1.92E-02
85	GO:0009744: response to sucrose	1.92E-02
86	GO:0006855: drug transmembrane transport	2.14E-02
87	GO:0031347: regulation of defense response	2.19E-02
88	GO:0006857: oligopeptide transport	2.49E-02
89	GO:0006468: protein phosphorylation	2.60E-02
90	GO:0042545: cell wall modification	2.98E-02
91	GO:0009416: response to light stimulus	3.12E-02
92	GO:0007275: multicellular organism development	3.55E-02
93	GO:0009845: seed germination	3.78E-02
94	GO:0055085: transmembrane transport	3.95E-02
95	GO:0006633: fatty acid biosynthetic process	4.20E-02
96	GO:0040008: regulation of growth	4.34E-02
97	GO:0006952: defense response	4.44E-02
98	GO:0007623: circadian rhythm	4.49E-02
99	GO:0006470: protein dephosphorylation	4.94E-02
100	GO:0007166: cell surface receptor signaling pathway	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0010011: auxin binding	6.94E-06
6	GO:0004853: uroporphyrinogen decarboxylase activity	8.61E-05
7	GO:0090729: toxin activity	3.42E-04
8	GO:0080054: low-affinity nitrate transmembrane transporter activity	3.42E-04
9	GO:0016851: magnesium chelatase activity	4.92E-04
10	GO:0009044: xylan 1,4-beta-xylosidase activity	6.55E-04
11	GO:0046556: alpha-L-arabinofuranosidase activity	6.55E-04
12	GO:0010328: auxin influx transmembrane transporter activity	6.55E-04
13	GO:0008725: DNA-3-methyladenine glycosylase activity	8.29E-04
14	GO:0015250: water channel activity	9.13E-04
15	GO:0031177: phosphopantetheine binding	1.01E-03
16	GO:0000035: acyl binding	1.20E-03
17	GO:0016832: aldehyde-lyase activity	1.20E-03
18	GO:0005096: GTPase activator activity	1.23E-03
19	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.61E-03
20	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.63E-03
21	GO:0009672: auxin:proton symporter activity	2.35E-03
22	GO:0015020: glucuronosyltransferase activity	2.61E-03
23	GO:0008794: arsenate reductase (glutaredoxin) activity	2.87E-03
24	GO:0004650: polygalacturonase activity	3.28E-03
25	GO:0031072: heat shock protein binding	3.43E-03
26	GO:0010329: auxin efflux transmembrane transporter activity	3.43E-03
27	GO:0003774: motor activity	3.73E-03
28	GO:0008289: lipid binding	4.57E-03
29	GO:0003714: transcription corepressor activity	4.65E-03
30	GO:0016829: lyase activity	4.85E-03
31	GO:0016301: kinase activity	5.66E-03
32	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.76E-03
33	GO:0030570: pectate lyase activity	6.01E-03
34	GO:0003756: protein disulfide isomerase activity	6.36E-03
35	GO:0004518: nuclease activity	9.07E-03
36	GO:0051015: actin filament binding	9.48E-03
37	GO:0016791: phosphatase activity	9.91E-03
38	GO:0005200: structural constituent of cytoskeleton	1.03E-02
39	GO:0008375: acetylglucosaminyltransferase activity	1.21E-02
40	GO:0008236: serine-type peptidase activity	1.31E-02
41	GO:0005515: protein binding	1.36E-02
42	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.50E-02
43	GO:0004722: protein serine/threonine phosphatase activity	1.56E-02
44	GO:0003993: acid phosphatase activity	1.65E-02
45	GO:0005215: transporter activity	1.73E-02
46	GO:0051537: 2 iron, 2 sulfur cluster binding	2.02E-02
47	GO:0015293: symporter activity	2.08E-02
48	GO:0003777: microtubule motor activity	2.55E-02
49	GO:0015171: amino acid transmembrane transporter activity	2.55E-02
50	GO:0045330: aspartyl esterase activity	2.55E-02
51	GO:0030599: pectinesterase activity	2.92E-02
52	GO:0051082: unfolded protein binding	3.04E-02
53	GO:0015035: protein disulfide oxidoreductase activity	3.11E-02
54	GO:0046872: metal ion binding	3.32E-02
55	GO:0004252: serine-type endopeptidase activity	3.85E-02
56	GO:0046910: pectinesterase inhibitor activity	4.27E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0043674: columella	8.61E-05
3	GO:0009534: chloroplast thylakoid	2.95E-04
4	GO:0010007: magnesium chelatase complex	3.42E-04
5	GO:0009531: secondary cell wall	4.92E-04
6	GO:0005886: plasma membrane	6.64E-04
7	GO:0005618: cell wall	6.66E-04
8	GO:0009505: plant-type cell wall	1.11E-03
9	GO:0016020: membrane	1.28E-03
10	GO:0042807: central vacuole	1.41E-03
11	GO:0009986: cell surface	1.41E-03
12	GO:0009533: chloroplast stromal thylakoid	1.41E-03
13	GO:0005576: extracellular region	1.82E-03
14	GO:0045298: tubulin complex	2.10E-03
15	GO:0016459: myosin complex	2.61E-03
16	GO:0009535: chloroplast thylakoid membrane	3.05E-03
17	GO:0015629: actin cytoskeleton	6.01E-03
18	GO:0009570: chloroplast stroma	6.41E-03
19	GO:0009522: photosystem I	7.87E-03
20	GO:0009941: chloroplast envelope	1.11E-02
21	GO:0005768: endosome	1.33E-02
22	GO:0031977: thylakoid lumen	1.81E-02
23	GO:0005856: cytoskeleton	2.08E-02
24	GO:0009507: chloroplast	2.23E-02
25	GO:0005887: integral component of plasma membrane	2.39E-02
26	GO:0009506: plasmodesma	2.46E-02
27	GO:0010008: endosome membrane	2.73E-02
28	GO:0009543: chloroplast thylakoid lumen	3.57E-02
29	GO:0009705: plant-type vacuole membrane	4.49E-02
30	GO:0031225: anchored component of membrane	4.84E-02