Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G28860

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0009715: chalcone biosynthetic process0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0090279: regulation of calcium ion import0.00E+00
5GO:0015882: L-ascorbic acid transport0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0008298: intracellular mRNA localization0.00E+00
8GO:0071474: cellular hyperosmotic response0.00E+00
9GO:0009854: oxidative photosynthetic carbon pathway8.05E-05
10GO:0071482: cellular response to light stimulus1.72E-04
11GO:0000476: maturation of 4.5S rRNA1.77E-04
12GO:0009443: pyridoxal 5'-phosphate salvage1.77E-04
13GO:0000967: rRNA 5'-end processing1.77E-04
14GO:0046467: membrane lipid biosynthetic process1.77E-04
15GO:0031426: polycistronic mRNA processing1.77E-04
16GO:0051775: response to redox state1.77E-04
17GO:0015671: oxygen transport1.77E-04
18GO:1904966: positive regulation of vitamin E biosynthetic process1.77E-04
19GO:0000481: maturation of 5S rRNA1.77E-04
20GO:1904964: positive regulation of phytol biosynthetic process1.77E-04
21GO:0042371: vitamin K biosynthetic process1.77E-04
22GO:0071461: cellular response to redox state1.77E-04
23GO:0010028: xanthophyll cycle1.77E-04
24GO:0034337: RNA folding1.77E-04
25GO:0015979: photosynthesis2.85E-04
26GO:0015995: chlorophyll biosynthetic process2.94E-04
27GO:1902326: positive regulation of chlorophyll biosynthetic process4.01E-04
28GO:0009629: response to gravity4.01E-04
29GO:0080005: photosystem stoichiometry adjustment4.01E-04
30GO:0071457: cellular response to ozone4.01E-04
31GO:0000256: allantoin catabolic process4.01E-04
32GO:0051262: protein tetramerization4.01E-04
33GO:0034470: ncRNA processing4.01E-04
34GO:0009767: photosynthetic electron transport chain4.47E-04
35GO:0010207: photosystem II assembly5.04E-04
36GO:0090391: granum assembly6.55E-04
37GO:0010136: ureide catabolic process6.55E-04
38GO:0015940: pantothenate biosynthetic process6.55E-04
39GO:0005977: glycogen metabolic process6.55E-04
40GO:0005975: carbohydrate metabolic process7.50E-04
41GO:0007017: microtubule-based process7.64E-04
42GO:0006145: purine nucleobase catabolic process9.34E-04
43GO:0010731: protein glutathionylation9.34E-04
44GO:2001141: regulation of RNA biosynthetic process9.34E-04
45GO:0071484: cellular response to light intensity9.34E-04
46GO:0009152: purine ribonucleotide biosynthetic process9.34E-04
47GO:0046653: tetrahydrofolate metabolic process9.34E-04
48GO:0006107: oxaloacetate metabolic process9.34E-04
49GO:0010239: chloroplast mRNA processing9.34E-04
50GO:2000122: negative regulation of stomatal complex development1.24E-03
51GO:0006546: glycine catabolic process1.24E-03
52GO:0006021: inositol biosynthetic process1.24E-03
53GO:0006734: NADH metabolic process1.24E-03
54GO:0010021: amylopectin biosynthetic process1.24E-03
55GO:0010037: response to carbon dioxide1.24E-03
56GO:0015976: carbon utilization1.24E-03
57GO:0071486: cellular response to high light intensity1.24E-03
58GO:0015689: molybdate ion transport1.24E-03
59GO:0009765: photosynthesis, light harvesting1.24E-03
60GO:0055114: oxidation-reduction process1.28E-03
61GO:0019252: starch biosynthetic process1.55E-03
62GO:0071493: cellular response to UV-B1.57E-03
63GO:0043097: pyrimidine nucleoside salvage1.57E-03
64GO:0006564: L-serine biosynthetic process1.57E-03
65GO:0006465: signal peptide processing1.57E-03
66GO:0006206: pyrimidine nucleobase metabolic process1.94E-03
67GO:0010190: cytochrome b6f complex assembly1.94E-03
68GO:0046855: inositol phosphate dephosphorylation1.94E-03
69GO:0050665: hydrogen peroxide biosynthetic process1.94E-03
70GO:0042549: photosystem II stabilization1.94E-03
71GO:0009409: response to cold2.09E-03
72GO:0010019: chloroplast-nucleus signaling pathway2.32E-03
73GO:0009769: photosynthesis, light harvesting in photosystem II2.74E-03
74GO:0009645: response to low light intensity stimulus2.74E-03
75GO:0006400: tRNA modification2.74E-03
76GO:0009772: photosynthetic electron transport in photosystem II2.74E-03
77GO:0018298: protein-chromophore linkage3.09E-03
78GO:0032508: DNA duplex unwinding3.17E-03
79GO:0031540: regulation of anthocyanin biosynthetic process3.17E-03
80GO:0052543: callose deposition in cell wall3.17E-03
81GO:0016559: peroxisome fission3.17E-03
82GO:0019430: removal of superoxide radicals3.63E-03
83GO:0009657: plastid organization3.63E-03
84GO:0010204: defense response signaling pathway, resistance gene-independent3.63E-03
85GO:0017004: cytochrome complex assembly3.63E-03
86GO:0009853: photorespiration3.91E-03
87GO:0019432: triglyceride biosynthetic process4.10E-03
88GO:0048507: meristem development4.10E-03
89GO:0006754: ATP biosynthetic process4.10E-03
90GO:0098656: anion transmembrane transport4.10E-03
91GO:0005982: starch metabolic process4.60E-03
92GO:0009735: response to cytokinin4.69E-03
93GO:0009773: photosynthetic electron transport in photosystem I5.65E-03
94GO:0019684: photosynthesis, light reaction5.65E-03
95GO:0009089: lysine biosynthetic process via diaminopimelate5.65E-03
96GO:0043085: positive regulation of catalytic activity5.65E-03
97GO:0006352: DNA-templated transcription, initiation5.65E-03
98GO:0018119: peptidyl-cysteine S-nitrosylation5.65E-03
99GO:0006790: sulfur compound metabolic process6.20E-03
100GO:0006108: malate metabolic process6.78E-03
101GO:0010020: chloroplast fission7.37E-03
102GO:0019253: reductive pentose-phosphate cycle7.37E-03
103GO:0010143: cutin biosynthetic process7.37E-03
104GO:0019853: L-ascorbic acid biosynthetic process7.98E-03
105GO:0046854: phosphatidylinositol phosphorylation7.98E-03
106GO:0006636: unsaturated fatty acid biosynthetic process8.61E-03
107GO:0009833: plant-type primary cell wall biogenesis8.61E-03
108GO:0009768: photosynthesis, light harvesting in photosystem I9.92E-03
109GO:0019915: lipid storage1.06E-02
110GO:0009269: response to desiccation1.06E-02
111GO:0019748: secondary metabolic process1.13E-02
112GO:0030245: cellulose catabolic process1.13E-02
113GO:0009686: gibberellin biosynthetic process1.20E-02
114GO:0009058: biosynthetic process1.28E-02
115GO:0010118: stomatal movement1.43E-02
116GO:0042631: cellular response to water deprivation1.43E-02
117GO:0071472: cellular response to salt stress1.50E-02
118GO:0006520: cellular amino acid metabolic process1.50E-02
119GO:0010268: brassinosteroid homeostasis1.50E-02
120GO:0006413: translational initiation1.56E-02
121GO:0015986: ATP synthesis coupled proton transport1.58E-02
122GO:0007059: chromosome segregation1.58E-02
123GO:0009791: post-embryonic development1.66E-02
124GO:0016132: brassinosteroid biosynthetic process1.75E-02
125GO:0007264: small GTPase mediated signal transduction1.83E-02
126GO:1901657: glycosyl compound metabolic process1.91E-02
127GO:0016125: sterol metabolic process2.00E-02
128GO:0009416: response to light stimulus2.20E-02
129GO:0009627: systemic acquired resistance2.45E-02
130GO:0042128: nitrate assimilation2.45E-02
131GO:0009658: chloroplast organization2.60E-02
132GO:0016311: dephosphorylation2.64E-02
133GO:0030244: cellulose biosynthetic process2.74E-02
134GO:0009813: flavonoid biosynthetic process2.84E-02
135GO:0006811: ion transport2.94E-02
136GO:0010218: response to far red light2.94E-02
137GO:0010119: regulation of stomatal movement3.04E-02
138GO:0009631: cold acclimation3.04E-02
139GO:0080167: response to karrikin3.22E-02
140GO:0009637: response to blue light3.24E-02
141GO:0034599: cellular response to oxidative stress3.35E-02
142GO:0006099: tricarboxylic acid cycle3.35E-02
143GO:0006631: fatty acid metabolic process3.67E-02
144GO:0010114: response to red light3.88E-02
145GO:0009926: auxin polar transport3.88E-02
146GO:0009644: response to high light intensity4.11E-02
147GO:0006869: lipid transport4.21E-02
148GO:0009636: response to toxic substance4.22E-02
149GO:0032259: methylation4.53E-02
150GO:0016042: lipid catabolic process4.60E-02
151GO:0051603: proteolysis involved in cellular protein catabolic process4.92E-02
152GO:0010224: response to UV-B4.92E-02
RankGO TermAdjusted P value
1GO:0016210: naringenin-chalcone synthase activity0.00E+00
2GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
3GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
4GO:0008974: phosphoribulokinase activity0.00E+00
5GO:0015229: L-ascorbic acid transporter activity0.00E+00
6GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
7GO:0008465: glycerate dehydrogenase activity0.00E+00
8GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
9GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
10GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
11GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
12GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
13GO:0019899: enzyme binding1.07E-04
14GO:0016491: oxidoreductase activity1.29E-04
15GO:0051777: ent-kaurenoate oxidase activity1.77E-04
16GO:0008746: NAD(P)+ transhydrogenase activity1.77E-04
17GO:0004328: formamidase activity1.77E-04
18GO:0010347: L-galactose-1-phosphate phosphatase activity1.77E-04
19GO:0005344: oxygen transporter activity1.77E-04
20GO:0046906: tetrapyrrole binding1.77E-04
21GO:0005227: calcium activated cation channel activity1.77E-04
22GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity1.77E-04
23GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity4.01E-04
24GO:0008934: inositol monophosphate 1-phosphatase activity4.01E-04
25GO:0052833: inositol monophosphate 4-phosphatase activity4.01E-04
26GO:0019156: isoamylase activity4.01E-04
27GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase4.01E-04
28GO:0004617: phosphoglycerate dehydrogenase activity4.01E-04
29GO:0004047: aminomethyltransferase activity4.01E-04
30GO:0052832: inositol monophosphate 3-phosphatase activity4.01E-04
31GO:0004312: fatty acid synthase activity4.01E-04
32GO:0004565: beta-galactosidase activity4.47E-04
33GO:0003993: acid phosphatase activity4.86E-04
34GO:0050734: hydroxycinnamoyltransferase activity6.55E-04
35GO:0004848: ureidoglycolate hydrolase activity6.55E-04
36GO:0016742: hydroxymethyl-, formyl- and related transferase activity6.55E-04
37GO:0070402: NADPH binding6.55E-04
38GO:0008864: formyltetrahydrofolate deformylase activity6.55E-04
39GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity6.55E-04
40GO:0016851: magnesium chelatase activity9.34E-04
41GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides9.34E-04
42GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity9.34E-04
43GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity9.34E-04
44GO:0001872: (1->3)-beta-D-glucan binding9.34E-04
45GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity9.34E-04
46GO:0048027: mRNA 5'-UTR binding9.34E-04
47GO:0015098: molybdate ion transmembrane transporter activity1.24E-03
48GO:0009011: starch synthase activity1.24E-03
49GO:0043495: protein anchor1.24E-03
50GO:0008891: glycolate oxidase activity1.24E-03
51GO:0001053: plastid sigma factor activity1.24E-03
52GO:0004045: aminoacyl-tRNA hydrolase activity1.24E-03
53GO:0016987: sigma factor activity1.24E-03
54GO:0000293: ferric-chelate reductase activity1.94E-03
55GO:0004784: superoxide dismutase activity1.94E-03
56GO:0004556: alpha-amylase activity1.94E-03
57GO:0016615: malate dehydrogenase activity1.94E-03
58GO:2001070: starch binding1.94E-03
59GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.04E-03
60GO:0005200: structural constituent of cytoskeleton2.12E-03
61GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.32E-03
62GO:0004849: uridine kinase activity2.32E-03
63GO:0030060: L-malate dehydrogenase activity2.32E-03
64GO:0005261: cation channel activity2.32E-03
65GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.32E-03
66GO:0016168: chlorophyll binding2.51E-03
67GO:0004033: aldo-keto reductase (NADP) activity3.17E-03
68GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism4.10E-03
69GO:0004185: serine-type carboxypeptidase activity5.03E-03
70GO:0047372: acylglycerol lipase activity5.65E-03
71GO:0051287: NAD binding6.09E-03
72GO:0005315: inorganic phosphate transmembrane transporter activity6.78E-03
73GO:0004089: carbonate dehydratase activity6.78E-03
74GO:0008266: poly(U) RNA binding7.37E-03
75GO:0042973: glucan endo-1,3-beta-D-glucosidase activity7.37E-03
76GO:0031409: pigment binding8.61E-03
77GO:0005528: FK506 binding9.26E-03
78GO:0003924: GTPase activity1.06E-02
79GO:0005525: GTP binding1.14E-02
80GO:0008810: cellulase activity1.20E-02
81GO:0016760: cellulose synthase (UDP-forming) activity1.20E-02
82GO:0022891: substrate-specific transmembrane transporter activity1.20E-02
83GO:0008514: organic anion transmembrane transporter activity1.27E-02
84GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.50E-02
85GO:0010181: FMN binding1.58E-02
86GO:0008289: lipid binding1.62E-02
87GO:0048038: quinone binding1.75E-02
88GO:0016887: ATPase activity1.86E-02
89GO:0016759: cellulose synthase activity2.00E-02
90GO:0008483: transaminase activity2.09E-02
91GO:0016722: oxidoreductase activity, oxidizing metal ions2.09E-02
92GO:0008237: metallopeptidase activity2.09E-02
93GO:0042802: identical protein binding2.13E-02
94GO:0016597: amino acid binding2.18E-02
95GO:0030247: polysaccharide binding2.55E-02
96GO:0102483: scopolin beta-glucosidase activity2.55E-02
97GO:0016788: hydrolase activity, acting on ester bonds2.65E-02
98GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.04E-02
99GO:0008422: beta-glucosidase activity3.45E-02
100GO:0052689: carboxylic ester hydrolase activity3.56E-02
101GO:0004364: glutathione transferase activity3.78E-02
102GO:0051537: 2 iron, 2 sulfur cluster binding4.11E-02
103GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.33E-02
104GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.80E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.43E-20
2GO:0009570: chloroplast stroma2.54E-09
3GO:0009535: chloroplast thylakoid membrane8.04E-09
4GO:0009941: chloroplast envelope4.35E-06
5GO:0009534: chloroplast thylakoid7.68E-05
6GO:0009523: photosystem II1.27E-04
7GO:0005773: vacuole1.55E-04
8GO:0005787: signal peptidase complex1.77E-04
9GO:0009344: nitrite reductase complex [NAD(P)H]1.77E-04
10GO:0009543: chloroplast thylakoid lumen2.78E-04
11GO:0043036: starch grain4.01E-04
12GO:0009579: thylakoid4.02E-04
13GO:0048046: apoplast5.51E-04
14GO:0010007: magnesium chelatase complex6.55E-04
15GO:0015630: microtubule cytoskeleton9.34E-04
16GO:0009517: PSII associated light-harvesting complex II1.24E-03
17GO:0009522: photosystem I1.44E-03
18GO:0005777: peroxisome1.59E-03
19GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)1.94E-03
20GO:0005618: cell wall2.07E-03
21GO:0010319: stromule2.12E-03
22GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.10E-03
23GO:0042644: chloroplast nucleoid4.10E-03
24GO:0045298: tubulin complex4.10E-03
25GO:0031977: thylakoid lumen4.64E-03
26GO:0005765: lysosomal membrane5.65E-03
27GO:0032040: small-subunit processome6.20E-03
28GO:0030095: chloroplast photosystem II7.37E-03
29GO:0030076: light-harvesting complex7.98E-03
30GO:0042651: thylakoid membrane9.92E-03
31GO:0009654: photosystem II oxygen evolving complex9.92E-03
32GO:0010287: plastoglobule1.15E-02
33GO:0019898: extrinsic component of membrane1.66E-02
34GO:0009505: plant-type cell wall2.19E-02
35GO:0046658: anchored component of plasma membrane2.22E-02
36GO:0030529: intracellular ribonucleoprotein complex2.27E-02
37GO:0009707: chloroplast outer membrane2.74E-02
38GO:0005874: microtubule3.11E-02
39GO:0031969: chloroplast membrane3.22E-02
40GO:0005819: spindle3.45E-02
41GO:0031902: late endosome membrane3.67E-02
42GO:0005886: plasma membrane4.37E-02
<
Gene type



Gene DE type