gene detail

Gene description

TAIR ID: AT1G55490

Short description: chaperonin 60 beta

Pathogen responsiveness: 0.52

General responsiveness: 1.11

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat:

TA.9305.1.S1_AT

GO biological process

response to cold, protein refolding, cell death, protein folding, mitochondrion organization, systemic acquired resistance, chaperone mediated protein folding requiring cofactor

GO cellular component

cytosolic ribosome, mitochondrion, chloroplast envelope, apoplast, chloroplast, chloroplast stroma, membrane, plasma membrane

GO molecular function

protein binding involved in protein folding, ATP binding, unfolded protein binding

Protein domain

Pfam	PF00118, TCP-1/cpn60 chaperonin family

Metabolic pathway

PWY-2724: alkane oxidation
PWY-2501: fatty acid α-oxidation I
PWY66-21: ethanol degradation II

KEGG pathway

PATH:ath03018: RNA degradation

Transcriptional regulation

Regulator:
AT5G13790

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 10 (Top20%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

29 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 2 h	-1.57	4.06E-02
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-2.76	3.28E-04
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-3.16	6.42E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-3.18	9.03E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-6.76	1.65E-10
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.87	3.22E-04
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-2.98	1.67E-04
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-2.56	6.09E-04
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-2.42	1.11E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.34	6.13E-15
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.79	3.09E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.97	5.83E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.59	9.70E-13
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.61	2.73E-08
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.36	1.19E-03
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.35	1.62E-04
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.05	6.21E-07
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	-1.70	9.84E-05
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-2.31	4.32E-08
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.89	1.21E-05
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-2.28	5.81E-08
GSE56094	Col, WT, control 12 h	Col, WT, hrpA- 12 h	-1.75	1.25E-04
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.98	1.44E-06
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	-1.87	1.70E-05
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-1.58	1.75E-04
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	-1.70	1.12E-04
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 HrpA- 12 h	-1.64	2.82E-02
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-2.03	3.29E-03
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-1.61	5.48E-03