co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G55490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
2	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0042407: cristae formation	0.00E+00
5	GO:0015995: chlorophyll biosynthetic process	7.96E-08
6	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.35E-05
7	GO:1901259: chloroplast rRNA processing	3.34E-05
8	GO:0032544: plastid translation	7.46E-05
9	GO:0000476: maturation of 4.5S rRNA	1.02E-04
10	GO:0000967: rRNA 5'-end processing	1.02E-04
11	GO:0034337: RNA folding	1.02E-04
12	GO:0010270: photosystem II oxygen evolving complex assembly	2.40E-04
13	GO:0034470: ncRNA processing	2.40E-04
14	GO:0006423: cysteinyl-tRNA aminoacylation	2.40E-04
15	GO:0006418: tRNA aminoacylation for protein translation	3.67E-04
16	GO:0061077: chaperone-mediated protein folding	4.03E-04
17	GO:0015979: photosynthesis	4.82E-04
18	GO:0010731: protein glutathionylation	5.73E-04
19	GO:0046739: transport of virus in multicellular host	5.73E-04
20	GO:0006020: inositol metabolic process	5.73E-04
21	GO:0006021: inositol biosynthetic process	7.62E-04
22	GO:0010190: cytochrome b6f complex assembly	1.17E-03
23	GO:0000470: maturation of LSU-rRNA	1.17E-03
24	GO:0006828: manganese ion transport	1.17E-03
25	GO:0046855: inositol phosphate dephosphorylation	1.17E-03
26	GO:0006458: 'de novo' protein folding	1.40E-03
27	GO:0009955: adaxial/abaxial pattern specification	1.40E-03
28	GO:0042026: protein refolding	1.40E-03
29	GO:0009735: response to cytokinin	1.47E-03
30	GO:0009658: chloroplast organization	1.88E-03
31	GO:0006353: DNA-templated transcription, termination	1.90E-03
32	GO:0010497: plasmodesmata-mediated intercellular transport	2.17E-03
33	GO:0006783: heme biosynthetic process	2.45E-03
34	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	2.74E-03
35	GO:0043067: regulation of programmed cell death	2.74E-03
36	GO:0006782: protoporphyrinogen IX biosynthetic process	3.05E-03
37	GO:0006816: calcium ion transport	3.36E-03
38	GO:0006415: translational termination	3.36E-03
39	GO:0006790: sulfur compound metabolic process	3.69E-03
40	GO:0005983: starch catabolic process	3.69E-03
41	GO:0010207: photosystem II assembly	4.37E-03
42	GO:0071732: cellular response to nitric oxide	4.72E-03
43	GO:0046854: phosphatidylinositol phosphorylation	4.72E-03
44	GO:0051017: actin filament bundle assembly	5.46E-03
45	GO:0009768: photosynthesis, light harvesting in photosystem I	5.85E-03
46	GO:0016114: terpenoid biosynthetic process	6.24E-03
47	GO:0016226: iron-sulfur cluster assembly	6.64E-03
48	GO:0007005: mitochondrion organization	6.64E-03
49	GO:0006730: one-carbon metabolic process	6.64E-03
50	GO:0071369: cellular response to ethylene stimulus	7.06E-03
51	GO:0006012: galactose metabolic process	7.06E-03
52	GO:0006633: fatty acid biosynthetic process	7.10E-03
53	GO:0016117: carotenoid biosynthetic process	7.91E-03
54	GO:0010197: polar nucleus fusion	8.80E-03
55	GO:0019252: starch biosynthetic process	9.73E-03
56	GO:0071281: cellular response to iron ion	1.12E-02
57	GO:0006457: protein folding	1.16E-02
58	GO:0042254: ribosome biogenesis	1.23E-02
59	GO:0010027: thylakoid membrane organization	1.32E-02
60	GO:0048481: plant ovule development	1.60E-02
61	GO:0000160: phosphorelay signal transduction system	1.65E-02
62	GO:0007568: aging	1.77E-02
63	GO:0006412: translation	1.99E-02
64	GO:0006839: mitochondrial transport	2.07E-02
65	GO:0032259: methylation	2.13E-02
66	GO:0006629: lipid metabolic process	2.22E-02
67	GO:0008152: metabolic process	2.45E-02
68	GO:0042538: hyperosmotic salinity response	2.66E-02
69	GO:0009736: cytokinin-activated signaling pathway	2.80E-02
70	GO:0006364: rRNA processing	2.80E-02
71	GO:0009409: response to cold	2.99E-02
72	GO:0046686: response to cadmium ion	3.56E-02
73	GO:0006396: RNA processing	3.67E-02
74	GO:0009790: embryo development	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
5	GO:0090711: FMN hydrolase activity	0.00E+00
6	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
7	GO:0010303: limit dextrinase activity	0.00E+00
8	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
9	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
10	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
11	GO:0051060: pullulanase activity	0.00E+00
12	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
13	GO:0019843: rRNA binding	4.19E-06
14	GO:0005528: FK506 binding	1.02E-05
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.83E-05
16	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.02E-04
17	GO:0004853: uroporphyrinogen decarboxylase activity	1.02E-04
18	GO:0016630: protochlorophyllide reductase activity	2.40E-04
19	GO:0052832: inositol monophosphate 3-phosphatase activity	2.40E-04
20	GO:0004817: cysteine-tRNA ligase activity	2.40E-04
21	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	2.40E-04
22	GO:0008934: inositol monophosphate 1-phosphatase activity	2.40E-04
23	GO:0052833: inositol monophosphate 4-phosphatase activity	2.40E-04
24	GO:0008967: phosphoglycolate phosphatase activity	2.40E-04
25	GO:0045174: glutathione dehydrogenase (ascorbate) activity	3.99E-04
26	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	3.99E-04
27	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	3.99E-04
28	GO:0002161: aminoacyl-tRNA editing activity	3.99E-04
29	GO:0004812: aminoacyl-tRNA ligase activity	5.65E-04
30	GO:0016149: translation release factor activity, codon specific	5.73E-04
31	GO:0019201: nucleotide kinase activity	5.73E-04
32	GO:0016851: magnesium chelatase activity	5.73E-04
33	GO:0003959: NADPH dehydrogenase activity	9.62E-04
34	GO:0004556: alpha-amylase activity	1.17E-03
35	GO:0004017: adenylate kinase activity	1.40E-03
36	GO:0051920: peroxiredoxin activity	1.40E-03
37	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.40E-03
38	GO:0004525: ribonuclease III activity	1.90E-03
39	GO:0016209: antioxidant activity	1.90E-03
40	GO:0004034: aldose 1-epimerase activity	1.90E-03
41	GO:0004033: aldo-keto reductase (NADP) activity	1.90E-03
42	GO:0003747: translation release factor activity	2.45E-03
43	GO:0047617: acyl-CoA hydrolase activity	2.74E-03
44	GO:0005384: manganese ion transmembrane transporter activity	2.74E-03
45	GO:0044183: protein binding involved in protein folding	3.36E-03
46	GO:0047372: acylglycerol lipase activity	3.36E-03
47	GO:0000049: tRNA binding	3.69E-03
48	GO:0003735: structural constituent of ribosome	3.76E-03
49	GO:0004089: carbonate dehydratase activity	4.02E-03
50	GO:0015095: magnesium ion transmembrane transporter activity	4.02E-03
51	GO:0031072: heat shock protein binding	4.02E-03
52	GO:0004535: poly(A)-specific ribonuclease activity	4.37E-03
53	GO:0051082: unfolded protein binding	4.52E-03
54	GO:0003887: DNA-directed DNA polymerase activity	5.09E-03
55	GO:0031409: pigment binding	5.09E-03
56	GO:0051536: iron-sulfur cluster binding	5.46E-03
57	GO:0005102: receptor binding	7.91E-03
58	GO:0016853: isomerase activity	9.26E-03
59	GO:0000156: phosphorelay response regulator activity	1.12E-02
60	GO:0051015: actin filament binding	1.12E-02
61	GO:0008168: methyltransferase activity	1.16E-02
62	GO:0003684: damaged DNA binding	1.17E-02
63	GO:0008237: metallopeptidase activity	1.22E-02
64	GO:0016168: chlorophyll binding	1.38E-02
65	GO:0003723: RNA binding	1.43E-02
66	GO:0004222: metalloendopeptidase activity	1.71E-02
67	GO:0003993: acid phosphatase activity	1.95E-02
68	GO:0004364: glutathione transferase activity	2.20E-02
69	GO:0043621: protein self-association	2.39E-02
70	GO:0016491: oxidoreductase activity	2.89E-02
71	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.30E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0005835: fatty acid synthase complex	0.00E+00
3	GO:0009507: chloroplast	4.50E-35
4	GO:0009570: chloroplast stroma	1.63E-21
5	GO:0009535: chloroplast thylakoid membrane	6.01E-16
6	GO:0009941: chloroplast envelope	3.81E-12
7	GO:0009579: thylakoid	4.57E-12
8	GO:0009534: chloroplast thylakoid	2.15E-09
9	GO:0031977: thylakoid lumen	7.08E-09
10	GO:0009543: chloroplast thylakoid lumen	1.54E-07
11	GO:0031969: chloroplast membrane	3.08E-06
12	GO:0010007: magnesium chelatase complex	3.99E-04
13	GO:0005840: ribosome	1.22E-03
14	GO:0005763: mitochondrial small ribosomal subunit	2.45E-03
15	GO:0032040: small-subunit processome	3.69E-03
16	GO:0030076: light-harvesting complex	4.72E-03
17	GO:0009654: photosystem II oxygen evolving complex	5.85E-03
18	GO:0015935: small ribosomal subunit	6.24E-03
19	GO:0015629: actin cytoskeleton	7.06E-03
20	GO:0019898: extrinsic component of membrane	9.73E-03
21	GO:0010319: stromule	1.22E-02
22	GO:0009707: chloroplast outer membrane	1.60E-02
23	GO:0005856: cytoskeleton	2.46E-02
24	GO:0009536: plastid	2.65E-02
25	GO:0048046: apoplast	3.40E-02
26	GO:0010287: plastoglobule	4.06E-02