GO Enrichment Analysis of Co-expressed Genes with
AT1G55490
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 2 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 3 | GO:0015742: alpha-ketoglutarate transport | 0.00E+00 |
| 4 | GO:0042407: cristae formation | 0.00E+00 |
| 5 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 6 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 7 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 8 | GO:0006223: uracil salvage | 0.00E+00 |
| 9 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 10 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 11 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 12 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 13 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 14 | GO:0015995: chlorophyll biosynthetic process | 4.89E-15 |
| 15 | GO:0009658: chloroplast organization | 1.22E-08 |
| 16 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.99E-07 |
| 17 | GO:0009735: response to cytokinin | 1.35E-06 |
| 18 | GO:1901259: chloroplast rRNA processing | 1.55E-06 |
| 19 | GO:0009657: plastid organization | 5.59E-06 |
| 20 | GO:0032544: plastid translation | 5.59E-06 |
| 21 | GO:0006783: heme biosynthetic process | 7.84E-06 |
| 22 | GO:0090391: granum assembly | 8.63E-06 |
| 23 | GO:0010027: thylakoid membrane organization | 2.57E-05 |
| 24 | GO:0006412: translation | 3.88E-05 |
| 25 | GO:0006418: tRNA aminoacylation for protein translation | 6.87E-05 |
| 26 | GO:0009790: embryo development | 8.14E-05 |
| 27 | GO:0042255: ribosome assembly | 1.97E-04 |
| 28 | GO:0006353: DNA-templated transcription, termination | 1.97E-04 |
| 29 | GO:0006438: valyl-tRNA aminoacylation | 2.25E-04 |
| 30 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.25E-04 |
| 31 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.25E-04 |
| 32 | GO:1904964: positive regulation of phytol biosynthetic process | 2.25E-04 |
| 33 | GO:0042371: vitamin K biosynthetic process | 2.25E-04 |
| 34 | GO:0006436: tryptophanyl-tRNA aminoacylation | 2.25E-04 |
| 35 | GO:0010028: xanthophyll cycle | 2.25E-04 |
| 36 | GO:0034337: RNA folding | 2.25E-04 |
| 37 | GO:0032502: developmental process | 2.45E-04 |
| 38 | GO:0031425: chloroplast RNA processing | 3.51E-04 |
| 39 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.51E-04 |
| 40 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.00E-04 |
| 41 | GO:0006423: cysteinyl-tRNA aminoacylation | 5.00E-04 |
| 42 | GO:2000071: regulation of defense response by callose deposition | 5.00E-04 |
| 43 | GO:0080183: response to photooxidative stress | 5.00E-04 |
| 44 | GO:0008616: queuosine biosynthetic process | 5.00E-04 |
| 45 | GO:0006729: tetrahydrobiopterin biosynthetic process | 5.00E-04 |
| 46 | GO:0006568: tryptophan metabolic process | 5.00E-04 |
| 47 | GO:0015979: photosynthesis | 5.29E-04 |
| 48 | GO:0042742: defense response to bacterium | 6.32E-04 |
| 49 | GO:0006760: folic acid-containing compound metabolic process | 8.13E-04 |
| 50 | GO:0061077: chaperone-mediated protein folding | 1.15E-03 |
| 51 | GO:0006241: CTP biosynthetic process | 1.16E-03 |
| 52 | GO:0006165: nucleoside diphosphate phosphorylation | 1.16E-03 |
| 53 | GO:0006228: UTP biosynthetic process | 1.16E-03 |
| 54 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.16E-03 |
| 55 | GO:0006986: response to unfolded protein | 1.16E-03 |
| 56 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.16E-03 |
| 57 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.16E-03 |
| 58 | GO:0015729: oxaloacetate transport | 1.16E-03 |
| 59 | GO:0009793: embryo development ending in seed dormancy | 1.29E-03 |
| 60 | GO:0006183: GTP biosynthetic process | 1.54E-03 |
| 61 | GO:0006221: pyrimidine nucleotide biosynthetic process | 1.54E-03 |
| 62 | GO:0044206: UMP salvage | 1.54E-03 |
| 63 | GO:0046656: folic acid biosynthetic process | 1.54E-03 |
| 64 | GO:0006021: inositol biosynthetic process | 1.54E-03 |
| 65 | GO:0044205: 'de novo' UMP biosynthetic process | 1.54E-03 |
| 66 | GO:0019676: ammonia assimilation cycle | 1.54E-03 |
| 67 | GO:0015743: malate transport | 1.54E-03 |
| 68 | GO:0042254: ribosome biogenesis | 1.54E-03 |
| 69 | GO:0008033: tRNA processing | 1.73E-03 |
| 70 | GO:0006662: glycerol ether metabolic process | 1.87E-03 |
| 71 | GO:0071423: malate transmembrane transport | 1.97E-03 |
| 72 | GO:0016120: carotene biosynthetic process | 1.97E-03 |
| 73 | GO:0043097: pyrimidine nucleoside salvage | 1.97E-03 |
| 74 | GO:0010236: plastoquinone biosynthetic process | 1.97E-03 |
| 75 | GO:0016123: xanthophyll biosynthetic process | 1.97E-03 |
| 76 | GO:0006206: pyrimidine nucleobase metabolic process | 2.43E-03 |
| 77 | GO:0006796: phosphate-containing compound metabolic process | 2.43E-03 |
| 78 | GO:0042793: transcription from plastid promoter | 2.43E-03 |
| 79 | GO:0046855: inositol phosphate dephosphorylation | 2.43E-03 |
| 80 | GO:0010190: cytochrome b6f complex assembly | 2.43E-03 |
| 81 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 2.43E-03 |
| 82 | GO:0045454: cell redox homeostasis | 2.73E-03 |
| 83 | GO:0042026: protein refolding | 2.91E-03 |
| 84 | GO:0042372: phylloquinone biosynthetic process | 2.91E-03 |
| 85 | GO:0006458: 'de novo' protein folding | 2.91E-03 |
| 86 | GO:0017148: negative regulation of translation | 2.91E-03 |
| 87 | GO:0046654: tetrahydrofolate biosynthetic process | 2.91E-03 |
| 88 | GO:0010019: chloroplast-nucleus signaling pathway | 2.91E-03 |
| 89 | GO:0009955: adaxial/abaxial pattern specification | 2.91E-03 |
| 90 | GO:0010196: nonphotochemical quenching | 3.43E-03 |
| 91 | GO:0006826: iron ion transport | 3.43E-03 |
| 92 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 3.43E-03 |
| 93 | GO:0006401: RNA catabolic process | 3.43E-03 |
| 94 | GO:0009772: photosynthetic electron transport in photosystem II | 3.43E-03 |
| 95 | GO:0006633: fatty acid biosynthetic process | 3.85E-03 |
| 96 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 3.98E-03 |
| 97 | GO:0006402: mRNA catabolic process | 3.98E-03 |
| 98 | GO:0006605: protein targeting | 3.98E-03 |
| 99 | GO:0052543: callose deposition in cell wall | 3.98E-03 |
| 100 | GO:0048564: photosystem I assembly | 3.98E-03 |
| 101 | GO:0009245: lipid A biosynthetic process | 5.16E-03 |
| 102 | GO:0098656: anion transmembrane transport | 5.16E-03 |
| 103 | GO:0034599: cellular response to oxidative stress | 5.71E-03 |
| 104 | GO:1900865: chloroplast RNA modification | 5.79E-03 |
| 105 | GO:0043067: regulation of programmed cell death | 5.79E-03 |
| 106 | GO:0045036: protein targeting to chloroplast | 6.45E-03 |
| 107 | GO:0009682: induced systemic resistance | 7.13E-03 |
| 108 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.13E-03 |
| 109 | GO:0043085: positive regulation of catalytic activity | 7.13E-03 |
| 110 | GO:0045037: protein import into chloroplast stroma | 7.84E-03 |
| 111 | GO:0006790: sulfur compound metabolic process | 7.84E-03 |
| 112 | GO:0010020: chloroplast fission | 9.33E-03 |
| 113 | GO:0019253: reductive pentose-phosphate cycle | 9.33E-03 |
| 114 | GO:0006364: rRNA processing | 9.50E-03 |
| 115 | GO:0080167: response to karrikin | 9.96E-03 |
| 116 | GO:0019853: L-ascorbic acid biosynthetic process | 1.01E-02 |
| 117 | GO:0010039: response to iron ion | 1.01E-02 |
| 118 | GO:0046854: phosphatidylinositol phosphorylation | 1.01E-02 |
| 119 | GO:0009116: nucleoside metabolic process | 1.17E-02 |
| 120 | GO:0006457: protein folding | 1.32E-02 |
| 121 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.43E-02 |
| 122 | GO:0007005: mitochondrion organization | 1.43E-02 |
| 123 | GO:0009411: response to UV | 1.53E-02 |
| 124 | GO:0009306: protein secretion | 1.62E-02 |
| 125 | GO:0016117: carotenoid biosynthetic process | 1.71E-02 |
| 126 | GO:0042335: cuticle development | 1.81E-02 |
| 127 | GO:0010118: stomatal movement | 1.81E-02 |
| 128 | GO:0010197: polar nucleus fusion | 1.91E-02 |
| 129 | GO:0009741: response to brassinosteroid | 1.91E-02 |
| 130 | GO:0006814: sodium ion transport | 2.01E-02 |
| 131 | GO:0006413: translational initiation | 2.19E-02 |
| 132 | GO:0016036: cellular response to phosphate starvation | 2.19E-02 |
| 133 | GO:0002229: defense response to oomycetes | 2.22E-02 |
| 134 | GO:0009451: RNA modification | 2.40E-02 |
| 135 | GO:1901657: glycosyl compound metabolic process | 2.43E-02 |
| 136 | GO:0010286: heat acclimation | 2.65E-02 |
| 137 | GO:0008380: RNA splicing | 2.80E-02 |
| 138 | GO:0009627: systemic acquired resistance | 3.12E-02 |
| 139 | GO:0009416: response to light stimulus | 3.35E-02 |
| 140 | GO:0048481: plant ovule development | 3.48E-02 |
| 141 | GO:0018298: protein-chromophore linkage | 3.48E-02 |
| 142 | GO:0006499: N-terminal protein myristoylation | 3.73E-02 |
| 143 | GO:0045893: positive regulation of transcription, DNA-templated | 3.97E-02 |
| 144 | GO:0009409: response to cold | 4.01E-02 |
| 145 | GO:0009867: jasmonic acid mediated signaling pathway | 4.12E-02 |
| 146 | GO:0006839: mitochondrial transport | 4.52E-02 |
| 147 | GO:0030001: metal ion transport | 4.52E-02 |
| 148 | GO:0042542: response to hydrogen peroxide | 4.79E-02 |
| 149 | GO:0046686: response to cadmium ion | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 2 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 3 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 4 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 5 | GO:0004853: uroporphyrinogen decarboxylase activity | 0.00E+00 |
| 6 | GO:0004151: dihydroorotase activity | 0.00E+00 |
| 7 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 8 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 9 | GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity | 0.00E+00 |
| 10 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 11 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 12 | GO:0015139: alpha-ketoglutarate transmembrane transporter activity | 0.00E+00 |
| 13 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 14 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 15 | GO:0019843: rRNA binding | 1.02E-08 |
| 16 | GO:0003735: structural constituent of ribosome | 1.99E-06 |
| 17 | GO:0070402: NADPH binding | 8.63E-06 |
| 18 | GO:0003723: RNA binding | 1.63E-05 |
| 19 | GO:0016851: magnesium chelatase activity | 1.97E-05 |
| 20 | GO:0051087: chaperone binding | 6.87E-05 |
| 21 | GO:0004812: aminoacyl-tRNA ligase activity | 1.33E-04 |
| 22 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.25E-04 |
| 23 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 2.25E-04 |
| 24 | GO:0004832: valine-tRNA ligase activity | 2.25E-04 |
| 25 | GO:0004830: tryptophan-tRNA ligase activity | 2.25E-04 |
| 26 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 2.25E-04 |
| 27 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.25E-04 |
| 28 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.25E-04 |
| 29 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 2.25E-04 |
| 30 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.25E-04 |
| 31 | GO:0051082: unfolded protein binding | 3.32E-04 |
| 32 | GO:0000774: adenyl-nucleotide exchange factor activity | 5.00E-04 |
| 33 | GO:0008934: inositol monophosphate 1-phosphatase activity | 5.00E-04 |
| 34 | GO:0052833: inositol monophosphate 4-phosphatase activity | 5.00E-04 |
| 35 | GO:0015367: oxoglutarate:malate antiporter activity | 5.00E-04 |
| 36 | GO:0016630: protochlorophyllide reductase activity | 5.00E-04 |
| 37 | GO:0004150: dihydroneopterin aldolase activity | 5.00E-04 |
| 38 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 5.00E-04 |
| 39 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 5.00E-04 |
| 40 | GO:0052832: inositol monophosphate 3-phosphatase activity | 5.00E-04 |
| 41 | GO:0004312: fatty acid synthase activity | 5.00E-04 |
| 42 | GO:0004817: cysteine-tRNA ligase activity | 5.00E-04 |
| 43 | GO:0008479: queuine tRNA-ribosyltransferase activity | 5.00E-04 |
| 44 | GO:0004751: ribose-5-phosphate isomerase activity | 8.13E-04 |
| 45 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 8.13E-04 |
| 46 | GO:0015131: oxaloacetate transmembrane transporter activity | 1.16E-03 |
| 47 | GO:0004550: nucleoside diphosphate kinase activity | 1.16E-03 |
| 48 | GO:0043023: ribosomal large subunit binding | 1.16E-03 |
| 49 | GO:0008097: 5S rRNA binding | 1.16E-03 |
| 50 | GO:0001872: (1->3)-beta-D-glucan binding | 1.16E-03 |
| 51 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 1.16E-03 |
| 52 | GO:0003727: single-stranded RNA binding | 1.48E-03 |
| 53 | GO:0003729: mRNA binding | 1.50E-03 |
| 54 | GO:0043495: protein anchor | 1.54E-03 |
| 55 | GO:0004659: prenyltransferase activity | 1.54E-03 |
| 56 | GO:0004845: uracil phosphoribosyltransferase activity | 1.54E-03 |
| 57 | GO:0047134: protein-disulfide reductase activity | 1.60E-03 |
| 58 | GO:0003959: NADPH dehydrogenase activity | 1.97E-03 |
| 59 | GO:0004040: amidase activity | 1.97E-03 |
| 60 | GO:0004791: thioredoxin-disulfide reductase activity | 2.00E-03 |
| 61 | GO:0015035: protein disulfide oxidoreductase activity | 2.25E-03 |
| 62 | GO:0031177: phosphopantetheine binding | 2.43E-03 |
| 63 | GO:0016462: pyrophosphatase activity | 2.43E-03 |
| 64 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.61E-03 |
| 65 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.91E-03 |
| 66 | GO:0004849: uridine kinase activity | 2.91E-03 |
| 67 | GO:0000035: acyl binding | 2.91E-03 |
| 68 | GO:0004427: inorganic diphosphatase activity | 3.43E-03 |
| 69 | GO:0015140: malate transmembrane transporter activity | 3.43E-03 |
| 70 | GO:0019899: enzyme binding | 3.43E-03 |
| 71 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 3.98E-03 |
| 72 | GO:0004033: aldo-keto reductase (NADP) activity | 3.98E-03 |
| 73 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.31E-03 |
| 74 | GO:0005525: GTP binding | 5.43E-03 |
| 75 | GO:0003746: translation elongation factor activity | 5.46E-03 |
| 76 | GO:0008047: enzyme activator activity | 6.45E-03 |
| 77 | GO:0044183: protein binding involved in protein folding | 7.13E-03 |
| 78 | GO:0000049: tRNA binding | 7.84E-03 |
| 79 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.22E-03 |
| 80 | GO:0000175: 3'-5'-exoribonuclease activity | 8.57E-03 |
| 81 | GO:0005315: inorganic phosphate transmembrane transporter activity | 8.57E-03 |
| 82 | GO:0031072: heat shock protein binding | 8.57E-03 |
| 83 | GO:0003690: double-stranded DNA binding | 9.83E-03 |
| 84 | GO:0005528: FK506 binding | 1.17E-02 |
| 85 | GO:0042803: protein homodimerization activity | 1.33E-02 |
| 86 | GO:0004176: ATP-dependent peptidase activity | 1.34E-02 |
| 87 | GO:0005507: copper ion binding | 1.53E-02 |
| 88 | GO:0022891: substrate-specific transmembrane transporter activity | 1.53E-02 |
| 89 | GO:0008514: organic anion transmembrane transporter activity | 1.62E-02 |
| 90 | GO:0010181: FMN binding | 2.01E-02 |
| 91 | GO:0008483: transaminase activity | 2.65E-02 |
| 92 | GO:0008237: metallopeptidase activity | 2.65E-02 |
| 93 | GO:0003743: translation initiation factor activity | 2.75E-02 |
| 94 | GO:0016887: ATPase activity | 2.83E-02 |
| 95 | GO:0042802: identical protein binding | 2.99E-02 |
| 96 | GO:0016168: chlorophyll binding | 3.00E-02 |
| 97 | GO:0102483: scopolin beta-glucosidase activity | 3.24E-02 |
| 98 | GO:0030247: polysaccharide binding | 3.24E-02 |
| 99 | GO:0000287: magnesium ion binding | 3.56E-02 |
| 100 | GO:0016491: oxidoreductase activity | 3.85E-02 |
| 101 | GO:0008422: beta-glucosidase activity | 4.39E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 5.11E-87 |
| 2 | GO:0009570: chloroplast stroma | 4.06E-54 |
| 3 | GO:0009941: chloroplast envelope | 4.66E-39 |
| 4 | GO:0009579: thylakoid | 1.49E-23 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.97E-18 |
| 6 | GO:0005840: ribosome | 6.66E-09 |
| 7 | GO:0009536: plastid | 1.61E-07 |
| 8 | GO:0009706: chloroplast inner membrane | 2.24E-06 |
| 9 | GO:0009534: chloroplast thylakoid | 4.17E-06 |
| 10 | GO:0009295: nucleoid | 2.02E-05 |
| 11 | GO:0009508: plastid chromosome | 2.84E-05 |
| 12 | GO:0009543: chloroplast thylakoid lumen | 5.79E-05 |
| 13 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.25E-04 |
| 14 | GO:0009515: granal stacked thylakoid | 2.25E-04 |
| 15 | GO:0015934: large ribosomal subunit | 6.23E-04 |
| 16 | GO:0005759: mitochondrial matrix | 6.72E-04 |
| 17 | GO:0010007: magnesium chelatase complex | 8.13E-04 |
| 18 | GO:0031977: thylakoid lumen | 8.67E-04 |
| 19 | GO:0042651: thylakoid membrane | 1.05E-03 |
| 20 | GO:0009654: photosystem II oxygen evolving complex | 1.05E-03 |
| 21 | GO:0031969: chloroplast membrane | 2.07E-03 |
| 22 | GO:0009707: chloroplast outer membrane | 4.31E-03 |
| 23 | GO:0009539: photosystem II reaction center | 4.56E-03 |
| 24 | GO:0005763: mitochondrial small ribosomal subunit | 5.16E-03 |
| 25 | GO:0000311: plastid large ribosomal subunit | 7.84E-03 |
| 26 | GO:0032040: small-subunit processome | 7.84E-03 |
| 27 | GO:0015935: small ribosomal subunit | 1.34E-02 |
| 28 | GO:0005623: cell | 1.75E-02 |
| 29 | GO:0009523: photosystem II | 2.11E-02 |
| 30 | GO:0019898: extrinsic component of membrane | 2.11E-02 |
| 31 | GO:0030529: intracellular ribonucleoprotein complex | 2.88E-02 |
| 32 | GO:0022626: cytosolic ribosome | 3.17E-02 |